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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:517053..518446 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02040.1 vs.
Match: EWM29127.1 (hypothetical protein Naga_100007g27 [Nannochloropsis gaditana]) HSP 1 Score: 201.8 bits (512), Expect = 2.500e-48 Identity = 107/187 (57.22%), Postives = 137/187 (73.26%), Query Frame = 0
Query: 72 LEAALYDGILAAFQSAGANLLQPPKVETQEGNLSYMVRARHGLDLYELKLSSQRHFVLVRAARSLGAFGQGGVAATGQTHALMDVSMPLIGQVYTLMLDLNRYVVRLADDSVALVNETVLLGNLNDNIFGKYGLEAHTTMPRPMDARGRGGGKRKVIQHWLGNPTTILFASVVMIVAALAIVRRPRK 259
+EA LYDG + A QSAGA +L+PP VET +GNLSY +RARHG+DLYE+ LSSQR+FVLVRA + AF +GG AA + +D+++PLIGQVYTLMLD+NRYVV LAD S ALVNET+LL NLN+NIFGK+GLEA TT + +++ G+R + L PTTIL+ V + V A+ +R RK
Sbjct: 1 MEAKLYDGTVVALQSAGARVLRPPAVETHDGNLSYTIRARHGIDLYEIHLSSQRNFVLVRATQCPSAFDKGGSAANERLCTALDLTVPLIGQVYTLMLDINRYVVHLADGSTALVNETLLLANLNENIFGKFGLEALTTDLKLLESHAL--GRRGLWGTGLSLPTTILYGGVAITVLAIVYLRFRRK 185
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02040.1 ID=NO01G02040.1|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp TTATGGGCTTGGGCAGGCGGGATGTAGAAGTGTGCTGCTCCGACACGTCG GTTTTTGGCGAGTGGGAGCAGCAGTAGATCCCTTGGATCACCCACTGAGC GGCCCAACACCCATCACCAACCCTGCAGCCTCACACTTCCCTGGTCGACA TCATTACCAATGACTCTTCGTCGAATGAATGGGAATGAGGGGAACCTGCA GGTACATTATTTGAACCGAGAATTTATTCTCTCAACCAATGGTGTTTGTC CGCCCGAAAGGCGCATCAACATCAAATCATCATATTATACAAAAACTACG GCCCTCCTCGACGACGGTGGCTTCCCTTAAACAAGCTCCAGGGGAGGGTG CAATCTATTGCTGACAATTTTTCACCCTCGCCAGTCGCTGCATTCAGATT AGATAATAACTCCATCAGATCTTCCTGGGAGTCCGCACAAAACTCACAGA CATAACCAGGGGAAGATCATGGCCACCGCCAGCGCAAACGACAAACCTCC ACCCTTTGACTTTGCGGCCGCGAATGCCTTCAAACTCCAGCAGGCCAAGG AGCTTTTAGAGCAGGAAGAAGCCAGGAATCCACCTCTCGCTGACGAAGGG GCAGCAGCTATCGCCTCTGGAAAAGGATACAGTCTGAAGCCGGTGGTGGG CAACGCGCCGGGGGCAAGTCAAGGCCTGGTGCTGGAAGCGGCGCTCTACG ACGGAATTTTGGCCGCATTTCAATCCGCGGGCGCAAATTTGCTCCAGCCA CCCAAGGTCGAGACGCAAGAAGGCAACCTCTCTTACATGGTTCGTGCCCG TCATGGCCTGGACTTATACGAGCTCAAGCTCTCATCACAGCGGCATTTTG TACTCGTCCGCGCGGCGCGAAGCTTGGGCGCATTTGGCCAAGGTGGAGTC GCCGCTACAGGACAGACACACGCGCTTATGGATGTCTCGATGCCTTTGAT TGGGCAAGTATACACCCTCATGCTCGACTTAAATCGCTACGTCGTGCGTT TGGCCGACGATTCGGTTGCCTTAGTAAATGAGACTGTGCTGTTGGGTAAT TTGAATGACAATATTTTCGGTAAGTACGGTTTGGAGGCTCACACGACGAT GCCAAGGCCGATGGATGCAAGGGGAAGAGGAGGAGGGAAAAGAAAAGTCA TTCAACACTGGTTAGGCAACCCCACCACTATCCTCTTTGCCTCTGTGGTC ATGATCGTGGCCGCTCTCGCCATTGTCCGAAGGCCAAGAAAGTAGAAAGG GAAAGTAGTATCGTGACGCGAGTTAAAGAACAACTATTTAATGTCGGAAG TGCTGTAATACTCATTCTCTGTGATTTCTCCCTCCCGGCTTAACACTCAC ATACGCTCTCACGCTTTTGTTGATCGCTATCTATCAAGCTGAAT back to topprotein sequence of NO01G02040.1 >NO01G02040.1-protein ID=NO01G02040.1-protein|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp MATASANDKPPPFDFAAANAFKLQQAKELLEQEEARNPPLADEGAAAIAS GKGYSLKPVVGNAPGASQGLVLEAALYDGILAAFQSAGANLLQPPKVETQ EGNLSYMVRARHGLDLYELKLSSQRHFVLVRAARSLGAFGQGGVAATGQT HALMDVSMPLIGQVYTLMLDLNRYVVRLADDSVALVNETVLLGNLNDNIF GKYGLEAHTTMPRPMDARGRGGGKRKVIQHWLGNPTTILFASVVMIVAAL AIVRRPRK* back to topmRNA from alignment at chr1:517053..518446- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02040.1 ID=NO01G02040.1|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp|location=Sequence derived from alignment at chr1:517053..518446- (Nannochloropsis oceanica) TTATGGGCTTGGGCAGGCGGGATGTAGAAGTGTGCTGCTCCGACACGTCG
GTTTTTGGCGAGTGGGAGCAGCAGTAGATCCCTTGGATCACCCACTGAGC
GGCCCAACACCCATCACCAACCCTGCAGCCTCACACTTCCCTGGTCGACA
TCATTACCAATGACTCTTCGTCGAATGAATGGGAATGAGGGGAACCTGCA
GGTACATTATTTGAACCGAGAATTTATTCTCTCAACCAATGGTGTTTGTC
CGCCCGAAAGGCGCATCAACATCAAATCATCATATTATACAAAAACTACG
GCCCTCCTCGACGACGGTGGCTTCCCTTAAACAAGCTCCAGGGGAGGGTG
CAATCTATTGCTGACAATTTTTCACCCTCGCCAGTCGCTGCATTCAGATT
AGATAATAACTCCATCAGATCTTCCTGGGAGTCCGCACAAAACTCACAGA
CATAACCAGGGGAAGATCATGGCCACCGCCAGCGCAAACGACAAACCTCC
ACCCTTTGACTTTGCGGCCGCGAATGCCTTCAAACTCCAGCAGGCCAAGG
AGCTTTTAGAGCAGGAAGAAGCCAGGAATCCACCTCTCGCTGACGAAGGG
GCAGCAGCTATCGCCTCTGGAAAAGGATACAGTCTGAAGCCGGTGGTGGG
CAACGCGCCGGGGGCAAGTCAAGGCCTGGTGCTGGAAGCGGCGCTCTACG
ACGGAATTTTGGCCGCATTTCAATCCGCGGGCGCAAATTTGCTCCAGCCA
CCCAAGGTCGAGACGCAAGAAGGCAACCTCTCTTACATGGTTCGTGCCCG
TCATGGCCTGGACTTATACGAGCTCAAGCTCTCATCACAGCGGCATTTTG
TACTCGTCCGCGCGGCGCGAAGCTTGGGCGCATTTGGCCAAGGTGGAGTC
GCCGCTACAGGACAGACACACGCGCTTATGGATGTCTCGATGCCTTTGAT
TGGGCAAGTATACACCCTCATGCTCGACTTAAATCGCTACGTCGTGCGTT
TGGCCGACGATTCGGTTGCCTTAGTAAATGAGACTGTGCTGTTGGGTAAT
TTGAATGACAATATTTTCGGTAAGTACGGTTTGGAGGCTCACACGACGAT
GCCAAGGCCGATGGATGCAAGGGGAAGAGGAGGAGGGAAAAGAAAAGTCA
TTCAACACTGGTTAGGCAACCCCACCACTATCCTCTTTGCCTCTGTGGTC
ATGATCGTGGCCGCTCTCGCCATTGTCCGAAGGCCAAGAAAGTAGAAAGG
GAAAGTAGTATCGTGACGCGAGTTAAAGAACAACTATTTAATGTCGGAAG
TGCTGTAATACTCATTCTCTGTGATTTCTCCCTCCCGGCTTAACACTCAC
ATACGCTCTCACGCTTTTGTTGATCGCTATCTATCAAGCTGAAT back to topCoding sequence (CDS) from alignment at chr1:517053..518446- >NO01G02040.1 ID=NO01G02040.1|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr1:517053..518446- (Nannochloropsis oceanica) ATGGCCACCGCCAGCGCAAACGACAAACCTCCACCCTTTGACTTTGCGGC CGCGAATGCCTTCAAACTCCAGCAGGCCAAGGAGCTTTTAGAGCAGGAAG AAGCCAGGAATCCACCTCTCGCTGACGAAGGGGCAGCAGCTATCGCCTCT GGAAAAGGATACAGTCTGAAGCCGGTGGTGGGCAACGCGCCGGGGGCAAG TCAAGGCCTGGTGCTGGAAGCGGCGCTCTACGACGGAATTTTGGCCGCAT TTCAATCCGCGGGCGCAAATTTGCTCCAGCCACCCAAGGTCGAGACGCAA GAAGGCAACCTCTCTTACATGGTTCGTGCCCGTCATGGCCTGGACTTATA CGAGCTCAAGCTCTCATCACAGCGGCATTTTGTACTCGTCCGCGCGGCGC GAAGCTTGGGCGCATTTGGCCAAGGTGGAGTCGCCGCTACAGGACAGACA CACGCGCTTATGGATGTCTCGATGCCTTTGATTGGGCAAGTATACACCCT CATGCTCGACTTAAATCGCTACGTCGTGCGTTTGGCCGACGATTCGGTTG CCTTAGTAAATGAGACTGTGCTGTTGGGTAATTTGAATGACAATATTTTC GGTAAGTACGGTTTGGAGGCTCACACGACGATGCCAAGGCCGATGGATGC AAGGGGAAGAGGAGGAGGGAAAAGAAAAGTCATTCAACACTGGTTAGGCA ACCCCACCACTATCCTCTTTGCCTCTGTGGTCATGATCGTGGCCGCTCTC GCCATTGTCCGAAGGCCAAGAAAGTAG back to top
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