NO01G02000, NO01G02000 (gene) Nannochloropsis oceanica

Overview
NameNO01G02000
Unique NameNO01G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length768
Alignment locationchr1:505995..506762 -

Link to JBrowse

Properties
Property NameValue
DescriptionConserved protein with diacylglycerol kinase catalytic domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:505995..506762 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016310phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO01G02000 vs. NCBI_GenBank
Match: EWM29140.1 (conserved protein with diacylglycerol kinase catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 5.400e-19
Identity = 80/188 (42.55%), Postives = 99/188 (52.66%), Query Frame = 0 
Query:   73 RSLSPYDVT----GGTSSSLLGFLKGAV----SSVEPAVATAADGEAAATIDEEISPEMKSVATSTSCSPFRP--LVSPSSPTPLQQQLEH-------------HQMRSNSVDSESSIXXXXXXXXAGLRGWWARASSSRRGPRPLMVGDRVSAGKWGEAVVLRVREKDAIVEVAFTRWRGRAFLHNS 238
            RSLSP   +    G  SSSLLGF KG+     ++VEPAV T+++   A T D     + K    + S  P  P  L  P +    QQ+ E              +  RS    S+S+          GLRGWW R S+   G + L VGDRVSAG+WGEAVVLRV+E D+ VEVAFTRWRGR FL  S
Sbjct: 1772 RSLSPVSGSNRGNGVASSSLLGFWKGSAATEKTAVEPAVNTSSE---AMTRD----GKGKDTPLTPSSEPRAPAYLSLPVAGDQEQQETEQDRRPPSPTCASGPYLARSEKAGSQSTNIKSSSSVSTGLRGWWGRGSADTIGKKTLAVGDRVSAGEWGEAVVLRVQEADSRVEVAFTRWRGRGFLRTS 1952
[Close]
BLAST of NO01G02000 vs. NCBI_GenBank
Match: EWM29141.1 (conserved protein with diacylglycerol kinase catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 5.400e-19
Identity = 80/188 (42.55%), Postives = 99/188 (52.66%), Query Frame = 0 
Query:   73 RSLSPYDVT----GGTSSSLLGFLKGAV----SSVEPAVATAADGEAAATIDEEISPEMKSVATSTSCSPFRP--LVSPSSPTPLQQQLEH-------------HQMRSNSVDSESSIXXXXXXXXAGLRGWWARASSSRRGPRPLMVGDRVSAGKWGEAVVLRVREKDAIVEVAFTRWRGRAFLHNS 238
            RSLSP   +    G  SSSLLGF KG+     ++VEPAV T+++   A T D     + K    + S  P  P  L  P +    QQ+ E              +  RS    S+S+          GLRGWW R S+   G + L VGDRVSAG+WGEAVVLRV+E D+ VEVAFTRWRGR FL  S
Sbjct: 1673 RSLSPVSGSNRGNGVASSSLLGFWKGSAATEKTAVEPAVNTSSE---AMTRD----GKGKDTPLTPSSEPRAPAYLSLPVAGDQEQQETEQDRRPPSPTCASGPYLARSEKAGSQSTNIKSSSSVSTGLRGWWGRGSADTIGKKTLAVGDRVSAGEWGEAVVLRVQEADSRVEVAFTRWRGRGFLRTS 1853
The following BLAST results are available for this feature:
BLAST of NO01G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29140.15.400e-1942.55conserved protein with diacylglycerol kinase catal... [more]
EWM29141.15.400e-1942.55conserved protein with diacylglycerol kinase catal... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008144NSK008144Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02000.1NO01G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100007g24gene1491Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02000.1NO01G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02000 ID=NO01G02000|Name=NO01G02000|organism=Nannochloropsis oceanica|type=gene|length=768bp
ATGACGGCGTATGTGCCTGCGGTAAGTTTGGCCGAGTTTGTATTGCCGAG
GAGGAATAGTAGCAATTACAGTAACAGTGGGAACGGAAGGAGACCACGGA
GTTTGTCAGCTTTGTCAGGGGGAAATGTGAGTGTTGGGTTGCCTTTGTCT
TCGGGAGGAGGGGGGAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAAGGGAATGGGAGGAGGAGTCTGTCGCCTTATGATGTCACAGGAGGAA
CATCATCTTCTTTGCTGGGGTTTCTGAAGGGAGCGGTTTCGAGTGTGGAG
CCAGCTGTTGCCACTGCAGCTGACGGTGAAGCGGCTGCAACAATAGACGA
GGAAATCAGTCCCGAGATGAAGAGTGTGGCAACGTCCACCTCGTGTTCTC
CGTTCCGCCCGCTGGTGTCACCTTCTTCTCCTACTCCTCTTCAGCAGCAG
CTCGAGCATCATCAGATGCGTTCCAATAGCGTAGATTCCGAGTCAAGCAT
TACTAGTACGACCAGCACGGCGAGTGCGGGCTTGCGGGGATGGTGGGCAA
GAGCAAGCAGCAGTCGAAGGGGCCCAAGGCCTTTGATGGTTGGCGATCGA
GTCTCCGCGGGTAAATGGGGGGAGGCGGTGGTCTTGCGGGTGAGGGAAAA
GGACGCGATAGTGGAGGTGGCATTTACTCGCTGGCGGGGTCGGGCTTTCT
TGCACAATAGTGGTGACGGGTTCTTGAGGGAGGGAGAGGTGGGGCGAGGG
AATAAGGGAGGGAGATGA
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protein sequence of NO01G02000.1

>NO01G02000.1-protein ID=NO01G02000.1-protein|Name=NO01G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MTAYVPAVSLAEFVLPRRNSSNYSNSGNGRRPRSLSALSGGNVSVGLPLS
SGGGGRGRGGGGGGGGGEGNGRRSLSPYDVTGGTSSSLLGFLKGAVSSVE
PAVATAADGEAAATIDEEISPEMKSVATSTSCSPFRPLVSPSSPTPLQQQ
LEHHQMRSNSVDSESSITSTTSTASAGLRGWWARASSSRRGPRPLMVGDR
VSAGKWGEAVVLRVREKDAIVEVAFTRWRGRAFLHNSGDGFLREGEVGRG
NKGGR*
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Synonyms
Publications