NO01G01930, NO01G01930 (gene) Nannochloropsis oceanica

Overview
NameNO01G01930
Unique NameNO01G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length471
Alignment locationchr1:483911..484381 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:483911..484381 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G01930 vs. NCBI_GenBank
Match: EWM29145.1 (hypothetical protein Naga_100007g13 [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 1.200e-32
Identity = 89/155 (57.42%), Postives = 102/155 (65.81%), Query Frame = 0 
Query:    1 MAKSARSKTRKHWASERRRTLGVPAETKQLKEQAERLAASLSTQTDQPSIMKLRGILRRLPGSEAQAMSVQRRMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMEVVPGKRATGKARVMSRFKKSGQAYSAKKQKRVK 156
            MAKSARSK+RKHWASERRRTLGVP ETKQL EQ++RLAA+LS QT QPSIMKL+ + +R PGS + AMSVQRR+A                                           +GMEVVPGKR TGKAR++SRFKKSGQA+SAKKQKRVK
Sbjct:    1 MAKSARSKSRKHWASERRRTLGVPVETKQLMEQSQRLAANLSKQTSQPSIMKLKSVFKR-PGSNSYAMSVQRRLAISRKRKSGTEGKHKASAVERESEGEMETVESAGAVSEDPVEEVDGMEVVPGKRPTGKARIVSRFKKSGQAFSAKKQKRVK 154
The following BLAST results are available for this feature:
BLAST of NO01G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29145.11.200e-3257.42hypothetical protein Naga_100007g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008154NSK008154Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01930.1NO01G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100007g13gene1501Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01930.1NO01G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01930 ID=NO01G01930|Name=NO01G01930|organism=Nannochloropsis oceanica|type=gene|length=471bp
ATGGCCAAATCCGCGCGCTCCAAGACCCGCAAACACTGGGCCTCCGAGCG
GCGGCGGACACTGGGAGTGCCGGCAGAGACTAAGCAGCTAAAGGAGCAAG
CCGAGCGGCTTGCGGCGAGCCTCTCCACTCAGACAGACCAGCCCTCCATT
ATGAAGCTACGAGGGATTTTAAGGAGGTTACCGGGAAGTGAAGCACAAGC
CATGTCCGTACAACGTCGCATGGCCATCAACAACAAGACCAAGAAGAGCA
GCAGCAACAAGAAGGAGGCGGTGGCGAAGAAAGCGTCCGAGGAGGATGTC
GAGATGCCCCCGGCAGCGGAGGAATCGGAGGAGGAGGAGGAGGAGGAGGA
GGCGGAGGGGATGGAGGTAGTGCCTGGTAAGAGGGCCACGGGCAAGGCGC
GCGTCATGTCACGGTTCAAGAAGTCTGGACAGGCGTACAGTGCCAAAAAG
CAGAAGCGTGTCAAGCTTTAG
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protein sequence of NO01G01930.1

>NO01G01930.1-protein ID=NO01G01930.1-protein|Name=NO01G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MAKSARSKTRKHWASERRRTLGVPAETKQLKEQAERLAASLSTQTDQPSI
MKLRGILRRLPGSEAQAMSVQRRMAINNKTKKSSSNKKEAVAKKASEEDV
EMPPAAEESEEEEEEEEAEGMEVVPGKRATGKARVMSRFKKSGQAYSAKK
QKRVKL*
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Synonyms
Publications