NO01G01930.1, NO01G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01930.1
Unique NameNO01G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length471
Alignment locationchr1:483911..484381 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:483911..484381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01930.1 vs.
Match: EWM29145.1 (hypothetical protein Naga_100007g13 [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 5.100e-36
Identity = 102/156 (65.38%), Postives = 125/156 (80.13%), Query Frame = 0
Query:    1 MAKSARSKTRKHWASERRRTLGVPAETKQLKEQAERLAASLSTQTDQPSIMKLRGILRRLPGSEAQAMSVQRRMAINNKTKKSSSNKKEAVA-KKASEEDVEMPPAAEESEEEEEEEEAEGMEVVPGKRATGKARVMSRFKKSGQAYSAKKQKRVK 156
            MAKSARSK+RKHWASERRRTLGVP ETKQL EQ++RLAA+LS QT QPSIMKL+ + +R PGS + AMSVQRR+AI+ K K  +  K +A A ++ SE ++E   +A  +  E+  EE +GMEVVPGKR TGKAR++SRFKKSGQA+SAKKQKRVK
Sbjct:    1 MAKSARSKSRKHWASERRRTLGVPVETKQLMEQSQRLAANLSKQTSQPSIMKLKSVFKR-PGSNSYAMSVQRRLAISRKRKSGTEGKHKASAVERESEGEMETVESA-GAVSEDPVEEVDGMEVVPGKRPTGKARIVSRFKKSGQAFSAKKQKRVK 154          
The following BLAST results are available for this feature:
BLAST of NO01G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29145.15.100e-3665.38hypothetical protein Naga_100007g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01930NO01G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01930.1NO01G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01930.1.cds1NO01G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01930.1 ID=NO01G01930.1|Name=NO01G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
ATGGCCAAATCCGCGCGCTCCAAGACCCGCAAACACTGGGCCTCCGAGCG
GCGGCGGACACTGGGAGTGCCGGCAGAGACTAAGCAGCTAAAGGAGCAAG
CCGAGCGGCTTGCGGCGAGCCTCTCCACTCAGACAGACCAGCCCTCCATT
ATGAAGCTACGAGGGATTTTAAGGAGGTTACCGGGAAGTGAAGCACAAGC
CATGTCCGTACAACGTCGCATGGCCATCAACAACAAGACCAAGAAGAGCA
GCAGCAACAAGAAGGAGGCGGTGGCGAAGAAAGCGTCCGAGGAGGATGTC
GAGATGCCCCCGGCAGCGGAGGAATCGGAGGAGGAGGAGGAGGAGGAGGA
GGCGGAGGGGATGGAGGTAGTGCCTGGTAAGAGGGCCACGGGCAAGGCGC
GCGTCATGTCACGGTTCAAGAAGTCTGGACAGGCGTACAGTGCCAAAAAG
CAGAAGCGTGTCAAGCTTTAG
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protein sequence of NO01G01930.1

>NO01G01930.1-protein ID=NO01G01930.1-protein|Name=NO01G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MAKSARSKTRKHWASERRRTLGVPAETKQLKEQAERLAASLSTQTDQPSI
MKLRGILRRLPGSEAQAMSVQRRMAINNKTKKSSSNKKEAVAKKASEEDV
EMPPAAEESEEEEEEEEAEGMEVVPGKRATGKARVMSRFKKSGQAYSAKK
QKRVKL*
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mRNA from alignment at chr1:483911..484381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01930.1 ID=NO01G01930.1|Name=NO01G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=471bp|location=Sequence derived from alignment at chr1:483911..484381+ (Nannochloropsis oceanica)
ATGGCCAAATCCGCGCGCTCCAAGACCCGCAAACACTGGGCCTCCGAGCG GCGGCGGACACTGGGAGTGCCGGCAGAGACTAAGCAGCTAAAGGAGCAAG CCGAGCGGCTTGCGGCGAGCCTCTCCACTCAGACAGACCAGCCCTCCATT ATGAAGCTACGAGGGATTTTAAGGAGGTTACCGGGAAGTGAAGCACAAGC CATGTCCGTACAACGTCGCATGGCCATCAACAACAAGACCAAGAAGAGCA GCAGCAACAAGAAGGAGGCGGTGGCGAAGAAAGCGTCCGAGGAGGATGTC GAGATGCCCCCGGCAGCGGAGGAATCGGAGGAGGAGGAGGAGGAGGAGGA GGCGGAGGGGATGGAGGTAGTGCCTGGTAAGAGGGCCACGGGCAAGGCGC GCGTCATGTCACGGTTCAAGAAGTCTGGACAGGCGTACAGTGCCAAAAAG CAGAAGCGTGTCAAGCTTTAG
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Coding sequence (CDS) from alignment at chr1:483911..484381+

>NO01G01930.1 ID=NO01G01930.1|Name=NO01G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr1:483911..484381+ (Nannochloropsis oceanica)
ATGGCCAAATCCGCGCGCTCCAAGACCCGCAAACACTGGGCCTCCGAGCG
GCGGCGGACACTGGGAGTGCCGGCAGAGACTAAGCAGCTAAAGGAGCAAG
CCGAGCGGCTTGCGGCGAGCCTCTCCACTCAGACAGACCAGCCCTCCATT
ATGAAGCTACGAGGGATTTTAAGGAGGTTACCGGGAAGTGAAGCACAAGC
CATGTCCGTACAACGTCGCATGGCCATCAACAACAAGACCAAGAAGAGCA
GCAGCAACAAGAAGGAGGCGGTGGCGAAGAAAGCGTCCGAGGAGGATGTC
GAGATGCCCCCGGCAGCGGAGGAATCGGAGGAGGAGGAGGAGGAGGAGGA
GGCGGAGGGGATGGAGGTAGTGCCTGGTAAGAGGGCCACGGGCAAGGCGC
GCGTCATGTCACGGTTCAAGAAGTCTGGACAGGCGTACAGTGCCAAAAAG
CAGAAGCGTGTCAAGCTTTAG
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Synonyms
Publications