NO01G01870, NO01G01870 (gene) Nannochloropsis oceanica

Overview
NameNO01G01870
Unique NameNO01G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1754
Alignment locationchr1:470677..472430 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:470677..472430 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G01870 vs. NCBI_GenBank
Match: XP_005855806.1 (hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526] >EKU20553.1 hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526] >EWM29184.1 hypothetical protein Naga_100007g7 [Nannochloropsis gaditana])

HSP 1 Score: 181.4 bits (459), Expect = 3.100e-42
Identity = 83/132 (62.88%), Postives = 101/132 (76.52%), Query Frame = 0 
Query:    4 QALNPPIPPTLSPPQVIFDYFYIPDHWADQRWGSGTFITKTVPFLRDYAKVKEFWLPNCRVMRDLLQEHEQFLRAKGLTWYFVGESWKNVLYVATEQVNGVMEASENEVKTNANQVKAYLDPLHPFIRICDV 136
            +A     P  L   QVIFDYFYIP+HWA QRWGSG  +T T+PFLR  A+V+EFWLPNC+VMR+LL+EHE+ L ++GL W  V E WKNVLYVATEQV+G+M+ S  EVKTNANQV AYLD  +PFI+I  +
Sbjct:   96 EAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPI 227
The following BLAST results are available for this feature:
BLAST of NO01G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855806.13.100e-4262.88hypothetical protein NGA_0587700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008163NSK008163Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01870.2NO01G01870.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G01870.1NO01G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668256gene_166Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g7gene1506Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01870.2NO01G01870.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G01870.1NO01G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01870 ID=NO01G01870|Name=NO01G01870|organism=Nannochloropsis oceanica|type=gene|length=1754bp
ACAACAGGTAGTCATGGCAGCACGGACAACGCGAGCGACCAGAAATTCCA
GCGCCGCACCCTTTTTTCAGCTGGAACGGGAGCGAGCCTGCAAAGGCAAC
ATCATGGCCCTCTCCATGGTCTACAGCCGACAGgtaagcgacccatccgc
accacgcccacgcggcatatttttgttaatatggaggatgtacatatgtg
aatgaaataagaaatgcgctgggtatggcatttgaagagtgccgcatcgt
cattcacctccgctcaccgtcatccaccccacgcgtaactcagGACGCCG
TCCCGGGGAAGGATTTTGGTCAAGTTTGGCGGGACCGTCTCCGCCTTGTG
CAGCTAGAGAATAATGGATGGAAGGTTTATAGCTGTGACTTGGGCCATGA
GGAGTCATTGGGCGAGATAGGCCGGCATTTGCAGAGTAATTTTGATCACC
ACCGGTTTCCTGAGGCATTCAAGAAACGGTGGCCCGATGGGCTGAAGCTT
CGCCTGgcaagtataatagaccaaaggacgcatgcttccatacacattta
ttggggcctttgacatgataatccccttctaatacccttcgttccccatc
ctcatatgctctcccaggctctcaatcctcccatccctcccaccctttct
cccccacagGTGATTTTTGATTACTTTTACATTCCGGATCACTGGGCCGA
TCAACGCTGGGGTTCTGGCACATTCATTACAAAAACTGTCCCTTTCCTCC
GCGATTACGCCAAAGTAAAGGAGTTCTGGCTACCCAACTGTAGGGTCATG
CGGGACCTGCTGCAGGAGCATGAGCAGTTTCTGAGGGCGAAGGGCTTGAC
CTGGTATTTTGTGGGGGAGAGTTGGAAGAATGTGTTATACGTGGCGACGG
AGCAGGTGAATGGTGTGATGGAGGCAAGTGAAAATGAGGTCAAGACGAAC
GCCAATCAGgtaggtagtcagggatggagggtgggggggtggaatgaggc
gaggaaggcacaaattattagcaatctgatacactcacacaagcatctac
ccccttttccctatcgatcaagGTGAAGGCCTATCTAGACCCCCTGCACC
CTTTCATCCGCATCTGTGACGTGCGTAAGCGCCGCCTCCGACGCCACCTG
CAAGAGGAGGCGAACCAGCGGGAGCAGCAGCCGCTGGAGCAGCAGCAGCA
GCAGGCAAGGAAGGAGGAGGAAGGTACAATAAAAAAGAAGCTCAAGGGTC
GCCCCTCGCAGCAGCCAGAGCAGCAACTGCTGTTGCTGCTGCAACAGAAG
GACAAGAATGTGCAAGAGGAAAAAGACGGACACGCGGAGGAGAAGGGGGA
GGGGAAGGAGGAGGGGGTGGAGGATGGCAGTAAGAGATGAAAATGGCGGG
AGTGGAGAGATAGCATGGTCGACCAACGCTAGAGATATAAGGGAGGGATG
ACAGTGGAATTTGGAGTGAAGTGTAGGCATAGCGGGTAAGAATAGAGGAG
AGAAGTTAAGGCACATACTTGATGACAAAGAGGCATGATGGATTAGGGAT
GATGCGCATGGGTCAGGAACCAAATAGAGGTGAGGTTTACTACAGCGACA
ACAGACAATGGGGGTGAAGAAGGCGACGAGGGAGGCGATGGCATTGTAAA
TCAGGTGAAAAGACAGAGAGGAGGCTGAATGAAGGAAGGAGGGAAGCATA
TTCCCTAGGCGAACAGAGAGGGAGACAGAAGCGATACACTTCCTTAGATT
TCGT
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protein sequence of NO01G01870.2

>NO01G01870.2-protein ID=NO01G01870.2-protein|Name=NO01G01870.2|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAARTTRATRNSSAAPFFQLERERACKGNIMALSMVYSRQDAVPGKDFGQ
VWRDRLRLVQLENNGWKVYSCDLGHEESLGEIGRHLQSNFDHHRFPEAFK
KRWPDGLKLRLVIFDYFYIPDHWADQRWGSGTFITKTVPFLRDYAKVKEF
WLPNCRVMRDLLQEHEQFLRAKGLTWYFVGESWKNVLYVATEQVNGVMEA
SENEVKTNANQVKAYLDPLHPFIRICDVRKRRLRRHLQEEANQREQQPLE
QQQQQARKEEEGTIKKKLKGRPSQQPEQQLLLLLQQKDKNVQEEKDGHAE
EKGEGKEEGVEDGSKR*
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protein sequence of NO01G01870.1

>NO01G01870.1-protein ID=NO01G01870.1-protein|Name=NO01G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MLSQALNPPIPPTLSPPQVIFDYFYIPDHWADQRWGSGTFITKTVPFLRD
YAKVKEFWLPNCRVMRDLLQEHEQFLRAKGLTWYFVGESWKNVLYVATEQ
VNGVMEASENEVKTNANQVKAYLDPLHPFIRICDVRKRRLRRHLQEEANQ
REQQPLEQQQQQARKEEEGTIKKKLKGRPSQQPEQQLLLLLQQKDKNVQE
EKDGHAEEKGEGKEEGVEDGSKR*
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Synonyms
Publications