NO01G01870.2, NO01G01870.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01870.2
Unique NameNO01G01870.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1328
Alignment locationchr1:470677..472430 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:470677..472430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01870.2 vs.
Match: XP_005855806.1 (hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526]; EKU20553.1 hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526]; EWM29184.1 hypothetical protein Naga_100007g7 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 1.200e-89
Identity = 164/267 (61.42%), Postives = 209/267 (78.28%), Query Frame = 0 
Query:    4 RTTRATRNSSAAPFFQLERERACKGNIMALSMVYSRQDAVPGKDFGQVWRDRLRLVQLENNGWKVYSCDLGHEESLGEIGRHLQSNFDHHRFPEAFKKRWPDGLKLRLVIFDYFYIPDHWADQRWGSGTFITKTVPFLRDYAKVKEFWLPNCRVMRDLLQEHEQFLRAKGLTWYFVGESWKNVLYVATEQVNGVMEASENEVKTNANQVKAYLDPLHPFIRICDVRKRRLRRHLQEEANQREQQPLEQQQQQARKEEEGTIKKKLKG 271
            RTTR+  +S+AAPF +L R+ A KGN++ LSM+Y+R+DAVP KDFGQVWRDRLRLVQLE+NGW+VYSCDL H+ESLG +GRHLQSNFDH RF EAF +R+P GL++R VIFDYFYIP+HWA QRWGSG  +T T+PFLR  A+V+EFWLPNC+VMR+LL+EHE+ L ++GL W  V E WKNVLYVATEQV+G+M+ S  EVKTNANQV AYLD  +PFI+I  +   + RR+ QE+      + L+  Q++++  E G   +  KG
Sbjct:    3 RTTRSRTSSNAAPFQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESNGWEVYSCDLSHDESLGVMGRHLQSNFDHRRFQEAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPIVLAKPRRYRQEKG-----RDLKDNQKRSKVVEGGLKVRYQKG 264
The following BLAST results are available for this feature:
BLAST of NO01G01870.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855806.11.200e-8961.42hypothetical protein NGA_0587700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01870NO01G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01870.2NO01G01870.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01870.2.cds1NO01G01870.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01870.2.cds2NO01G01870.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01870.2.cds3NO01G01870.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01870.2.cds4NO01G01870.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01870.2 ID=NO01G01870.2|Name=NO01G01870.2|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp
ACAACAGGTAGTCATGGCAGCACGGACAACGCGAGCGACCAGAAATTCCA
GCGCCGCACCCTTTTTTCAGCTGGAACGGGAGCGAGCCTGCAAAGGCAAC
ATCATGGCCCTCTCCATGGTCTACAGCCGACAGGACGCCGTCCCGGGGAA
GGATTTTGGTCAAGTTTGGCGGGACCGTCTCCGCCTTGTGCAGCTAGAGA
ATAATGGATGGAAGGTTTATAGCTGTGACTTGGGCCATGAGGAGTCATTG
GGCGAGATAGGCCGGCATTTGCAGAGTAATTTTGATCACCACCGGTTTCC
TGAGGCATTCAAGAAACGGTGGCCCGATGGGCTGAAGCTTCGCCTGGTGA
TTTTTGATTACTTTTACATTCCGGATCACTGGGCCGATCAACGCTGGGGT
TCTGGCACATTCATTACAAAAACTGTCCCTTTCCTCCGCGATTACGCCAA
AGTAAAGGAGTTCTGGCTACCCAACTGTAGGGTCATGCGGGACCTGCTGC
AGGAGCATGAGCAGTTTCTGAGGGCGAAGGGCTTGACCTGGTATTTTGTG
GGGGAGAGTTGGAAGAATGTGTTATACGTGGCGACGGAGCAGGTGAATGG
TGTGATGGAGGCAAGTGAAAATGAGGTCAAGACGAACGCCAATCAGGTGA
AGGCCTATCTAGACCCCCTGCACCCTTTCATCCGCATCTGTGACGTGCGT
AAGCGCCGCCTCCGACGCCACCTGCAAGAGGAGGCGAACCAGCGGGAGCA
GCAGCCGCTGGAGCAGCAGCAGCAGCAGGCAAGGAAGGAGGAGGAAGGTA
CAATAAAAAAGAAGCTCAAGGGTCGCCCCTCGCAGCAGCCAGAGCAGCAA
CTGCTGTTGCTGCTGCAACAGAAGGACAAGAATGTGCAAGAGGAAAAAGA
CGGACACGCGGAGGAGAAGGGGGAGGGGAAGGAGGAGGGGGTGGAGGATG
GCAGTAAGAGATGAAAATGGCGGGAGTGGAGAGATAGCATGGTCGACCAA
CGCTAGAGATATAAGGGAGGGATGACAGTGGAATTTGGAGTGAAGTGTAG
GCATAGCGGGTAAGAATAGAGGAGAGAAGTTAAGGCACATACTTGATGAC
AAAGAGGCATGATGGATTAGGGATGATGCGCATGGGTCAGGAACCAAATA
GAGGTGAGGTTTACTACAGCGACAACAGACAATGGGGGTGAAGAAGGCGA
CGAGGGAGGCGATGGCATTGTAAATCAGGTGAAAAGACAGAGAGGAGGCT
GAATGAAGGAAGGAGGGAAGCATATTCCCTAGGCGAACAGAGAGGGAGAC
AGAAGCGATACACTTCCTTAGATTTCGT
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protein sequence of NO01G01870.2

>NO01G01870.2-protein ID=NO01G01870.2-protein|Name=NO01G01870.2|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAARTTRATRNSSAAPFFQLERERACKGNIMALSMVYSRQDAVPGKDFGQ
VWRDRLRLVQLENNGWKVYSCDLGHEESLGEIGRHLQSNFDHHRFPEAFK
KRWPDGLKLRLVIFDYFYIPDHWADQRWGSGTFITKTVPFLRDYAKVKEF
WLPNCRVMRDLLQEHEQFLRAKGLTWYFVGESWKNVLYVATEQVNGVMEA
SENEVKTNANQVKAYLDPLHPFIRICDVRKRRLRRHLQEEANQREQQPLE
QQQQQARKEEEGTIKKKLKGRPSQQPEQQLLLLLQQKDKNVQEEKDGHAE
EKGEGKEEGVEDGSKR*
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mRNA from alignment at chr1:470677..472430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01870.2 ID=NO01G01870.2|Name=NO01G01870.2|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp|location=Sequence derived from alignment at chr1:470677..472430- (Nannochloropsis oceanica)
ACAACAGGTAGTCATGGCAGCACGGACAACGCGAGCGACCAGAAATTCCA
GCGCCGCACCCTTTTTTCAGCTGGAACGGGAGCGAGCCTGCAAAGGCAAC
ATCATGGCCCTCTCCATGGTCTACAGCCGACAGGTAAGCGACCCATCCGC
ACCACGCCCACGCGGCATATTTTTGTTAATATGGAGGATGTACATATGTG
AATGAAATAAGAAATGCGCTGGGTATGGCATTTGAAGAGTGCCGCATCGT
CATTCACCTCCGCTCACCGTCATCCACCCCACGCGTAACTCAGGACGCCG
TCCCGGGGAAGGATTTTGGTCAAGTTTGGCGGGACCGTCTCCGCCTTGTG
CAGCTAGAGAATAATGGATGGAAGGTTTATAGCTGTGACTTGGGCCATGA
GGAGTCATTGGGCGAGATAGGCCGGCATTTGCAGAGTAATTTTGATCACC
ACCGGTTTCCTGAGGCATTCAAGAAACGGTGGCCCGATGGGCTGAAGCTT
CGCCTGGCAAGTATAATAGACCAAAGGACGCATGCTTCCATACACATTTA
TTGGGGCCTTTGACATGATAATCCCCTTCTAATACCCTTCGTTCCCCATC
CTCATATGCTCTCCCAGGCTCTCAATCCTCCCATCCCTCCCACCCTTTCT
CCCCCACAGGTGATTTTTGATTACTTTTACATTCCGGATCACTGGGCCGA
TCAACGCTGGGGTTCTGGCACATTCATTACAAAAACTGTCCCTTTCCTCC
GCGATTACGCCAAAGTAAAGGAGTTCTGGCTACCCAACTGTAGGGTCATG
CGGGACCTGCTGCAGGAGCATGAGCAGTTTCTGAGGGCGAAGGGCTTGAC
CTGGTATTTTGTGGGGGAGAGTTGGAAGAATGTGTTATACGTGGCGACGG
AGCAGGTGAATGGTGTGATGGAGGCAAGTGAAAATGAGGTCAAGACGAAC
GCCAATCAGGTAGGTAGTCAGGGATGGAGGGTGGGGGGGTGGAATGAGGC
GAGGAAGGCACAAATTATTAGCAATCTGATACACTCACACAAGCATCTAC
CCCCTTTTCCCTATCGATCAAGGTGAAGGCCTATCTAGACCCCCTGCACC
CTTTCATCCGCATCTGTGACGTGCGTAAGCGCCGCCTCCGACGCCACCTG
CAAGAGGAGGCGAACCAGCGGGAGCAGCAGCCGCTGGAGCAGCAGCAGCA
GCAGGCAAGGAAGGAGGAGGAAGGTACAATAAAAAAGAAGCTCAAGGGTC
GCCCCTCGCAGCAGCCAGAGCAGCAACTGCTGTTGCTGCTGCAACAGAAG
GACAAGAATGTGCAAGAGGAAAAAGACGGACACGCGGAGGAGAAGGGGGA
GGGGAAGGAGGAGGGGGTGGAGGATGGCAGTAAGAGATGAAAATGGCGGG
AGTGGAGAGATAGCATGGTCGACCAACGCTAGAGATATAAGGGAGGGATG
ACAGTGGAATTTGGAGTGAAGTGTAGGCATAGCGGGTAAGAATAGAGGAG
AGAAGTTAAGGCACATACTTGATGACAAAGAGGCATGATGGATTAGGGAT
GATGCGCATGGGTCAGGAACCAAATAGAGGTGAGGTTTACTACAGCGACA
ACAGACAATGGGGGTGAAGAAGGCGACGAGGGAGGCGATGGCATTGTAAA
TCAGGTGAAAAGACAGAGAGGAGGCTGAATGAAGGAAGGAGGGAAGCATA
TTCCCTAGGCGAACAGAGAGGGAGACAGAAGCGATACACTTCCTTAGATT
TCGT
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Coding sequence (CDS) from alignment at chr1:470677..472430-

>NO01G01870.2 ID=NO01G01870.2|Name=NO01G01870.2|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr1:470677..472430- (Nannochloropsis oceanica)
ATGGCAGCACGGACAACGCGAGCGACCAGAAATTCCAGCGCCGCACCCTT
TTTTCAGCTGGAACGGGAGCGAGCCTGCAAAGGCAACATCATGGCCCTCT
CCATGGTCTACAGCCGACAGGACGCCGTCCCGGGGAAGGATTTTGGTCAA
GTTTGGCGGGACCGTCTCCGCCTTGTGCAGCTAGAGAATAATGGATGGAA
GGTTTATAGCTGTGACTTGGGCCATGAGGAGTCATTGGGCGAGATAGGCC
GGCATTTGCAGAGTAATTTTGATCACCACCGGTTTCCTGAGGCATTCAAG
AAACGGTGGCCCGATGGGCTGAAGCTTCGCCTGGTGATTTTTGATTACTT
TTACATTCCGGATCACTGGGCCGATCAACGCTGGGGTTCTGGCACATTCA
TTACAAAAACTGTCCCTTTCCTCCGCGATTACGCCAAAGTAAAGGAGTTC
TGGCTACCCAACTGTAGGGTCATGCGGGACCTGCTGCAGGAGCATGAGCA
GTTTCTGAGGGCGAAGGGCTTGACCTGGTATTTTGTGGGGGAGAGTTGGA
AGAATGTGTTATACGTGGCGACGGAGCAGGTGAATGGTGTGATGGAGGCA
AGTGAAAATGAGGTCAAGACGAACGCCAATCAGGTGAAGGCCTATCTAGA
CCCCCTGCACCCTTTCATCCGCATCTGTGACGTGCGTAAGCGCCGCCTCC
GACGCCACCTGCAAGAGGAGGCGAACCAGCGGGAGCAGCAGCCGCTGGAG
CAGCAGCAGCAGCAGGCAAGGAAGGAGGAGGAAGGTACAATAAAAAAGAA
GCTCAAGGGTCGCCCCTCGCAGCAGCCAGAGCAGCAACTGCTGTTGCTGC
TGCAACAGAAGGACAAGAATGTGCAAGAGGAAAAAGACGGACACGCGGAG
GAGAAGGGGGAGGGGAAGGAGGAGGGGGTGGAGGATGGCAGTAAGAGATG
A
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Synonyms
Publications