NO01G01790, NO01G01790 (gene) Nannochloropsis oceanica

Overview
NameNO01G01790
Unique NameNO01G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1906
Alignment locationchr1:453729..455634 -

Link to JBrowse

Properties
Property NameValue
Descriptionribonuclease P family protein / Rpp14 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:453729..455634 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
GO:0004540ribonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0090501RNA phosphodiester bond hydrolysis
GO:0008033tRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR038085Rnp2-like_sf
IPR002759RNase_P/MRP_subunit
Homology
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BLAST of NO01G01790 vs. NCBI_GenBank
Match: EWM29082.1 (putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana] >EWM29083.1 putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 2.100e-17
Identity = 60/141 (42.55%), Postives = 69/141 (48.94%), Query Frame = 0 
Query:   36 QESIQINFGDFGIAALLNSLQIRYYDEATHIFILRCSREGYRSAWAAMTL-XXXXXXXXXXXXXXXXXXXXXXXXXVLRVSGSVRTCRTDAVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXWVKTKRIYYQTQIEGAIQGV 176
            +ES+Q NFG+FG A LL S+Q+RYYDEAT IFILRC R+ +RS WAAMTL                          VLRVSGSVRTCR DAV I                            +     +YQ QI  AIQGV
Sbjct:   36 KESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAANELEGNNRRPDQESL--------MAASTAFYQAQISSAIQGV 168
The following BLAST results are available for this feature:
BLAST of NO01G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29082.12.100e-1742.55putative ribonuclease p mrp protein subunit pop5 [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008172NSK008172Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01790.3NO01G01790.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G01790.2NO01G01790.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G01790.1NO01G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576403gene_159Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g64gene1512Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01790.3NO01G01790.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G01790.2NO01G01790.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G01790.1NO01G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01790 ID=NO01G01790|Name=NO01G01790|organism=Nannochloropsis oceanica|type=gene|length=1906bp
TGGGGTAAAACGAGGACTATGTTAGTAAATAATGTGTGCTTGAAAAGTTG
CCGCCGTGTGCCTTACGAGCGATAGGAGGATAACAGCGAACGGCTGTGGC
TCTTGTGCGTGAGCGGCAGAGAAAAGAGCAGAAATAGAATTATTTGTCTC
ACGGTCACACGCGCAATGCTACCACACGCACAGGATAAGGACGGTGGATA
GGGAGGAGGGGGGGCAGCCATGCGGGTCCGCCTCCGCTACTTGACTTGCA
AACTCGATCTCCCCCTGCAGGCCGATACCGCTCGGAAGAAGACGACTGCG
TTTGAAATCCTCAAGACCATCAAGGTGAGGGCACTGCACACGGAAGGCAT
AGAGTGGAGAGGGACAAGGGGGGGGGCACAGATATTTTCATGAGACCCGT
CATCATCTCTCTCGACCTCCCGGCTGTCGGGCTTTCGGTCCCCCTCACTC
TCCACCACCCTGCCTCACGCTTCGCGATGGTGGGTTGCGAACGACTCGCA
TATCCGAGACATTCAGTATAAGCTTGGACTGTTGACATGCCTGCAATGAC
TGTGCCAGTTGTTCATGCTTGTGCTTGTGGTCTTGTGAGCAGTTTTGTGA
GGCCCCTCGAGGAGAGATTTGAATTGCGCATGCCGAAGCAGGCTGAAACT
GTACCGTCCAGAGCACTACACACACCCTATATATCATGTGCACTTGAACC
ACCTCAAGGCTTGTGCGGCTCTGACACCTGTATGCTCGTTCTTGACCGTA
ATGAATCATTGGAAAATCTTCTCCACTCTCTCGCTTGACCTCCGCACTCA
TCTTCCCCTCCCTCCCCACGCAACTATTCTCACCTCTCCTCCACCGTACC
ACCCACAGGAATCAATCCAAATTAATTTTGGTGACTTTGGAATAGCTGCC
CTGCTCAATTCTTTGCAGATCCGGTACTATGATGAAGCCACGCACATCTT
TATTTTGCGCTGCTCACGCGAAGGCTACCGCTCCGCCTGGGCAGCCATGA
CCCTACTTACTTCCCTCGGTGGCGGTAACAGCAGTAACAGCAGCAGTACT
AGTAGCACTCGTACTAAAGCAAGTATAAGCGTGTTACGTGTTTCGGGCTC
CGTGCGCACGTGTCGGACAGACGCGGTAGAGATCCTGGTAATGGCTGCGA
AAGCAGCAGCAGCGGCGTGTGTTTTGCAACAGCAGATGGAGGAAGTCCAC
GAAGAGGACGAGGAGTGGGTAAAAACCAAGCGCATTTACTACCAGACGCA
AATTGAAGGGGCCATCCAAGGCGTGTAAAAAGAGACGACACAGgtaggtt
gtacaatgagggggaagagaagggtagcacacacgtgtggatgaagctgg
gtgaggagaggaaaggagcacatagtaaaagcgggtgtggcgccaaggaa
tctccccgcgcccatgcgtacattaatgatgccagaagaaaccacatcgc
ttaaaacaactgcaatgctcacgtttgtccatgacttgctgttgtgccgc
ggtgtgacatgcactttatgtaaagttgaaaaaaacgcttgttcttcgac
acttgttcaagtatcccttccgtgtttctgagaaatagaagagaagagaa
atatgtaggtatggaaagatgtatactcttcgaattttcgtgacttctct
ttcgctctcccctctgcacaccaaagcagAGGTTGGAAACAAAGGCCAAG
CATCATCCTGGAGTTTTATCACATGCACCACTCTTACCGGAGACCAAGAC
ACTCAGGCCCTACAGCTGTTAACATCAATATCAAGGAGACAAGGCATTGA
ATAAATGAAAACACTCACACAAGAGACCGAGTGGATAGATGCTGAATAGC
CCAGCCTAAAGAAAAGTAATGGACATAAGTAAATATGACATGACGACAAG
GGTGGA
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protein sequence of NO01G01790.3

>NO01G01790.3-protein ID=NO01G01790.3-protein|Name=NO01G01790.3|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MNHWKIFSTLSLDLRTHLPLPPHATILTSPPPYHPQESIQINFGDFGIAA
LLNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGGNSSNSSST
SSTRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVH
EEDEEWVKTKRIYYQTQIEGAIQGV*
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protein sequence of NO01G01790.2

>NO01G01790.2-protein ID=NO01G01790.2-protein|Name=NO01G01790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MRVRLRYLTCKLDLPLQADTARKKTTAFEILKTIKESIQINFGDFGIAAL
LNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGGNSSNSSSTS
STRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVHE
EDEEWVKTKRIYYQTQIEGAIQGV*
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protein sequence of NO01G01790.1

>NO01G01790.1-protein ID=NO01G01790.1-protein|Name=NO01G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MRVRLRYLTCKLDLPLQADTARKKTTAFEILKTIKESIQINFGDFGIAAL
LNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGGNSSNSSSTS
STRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVHE
EDEEWVKTKRIYYQTQIEGAIQGV*
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Synonyms
Publications