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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:453729..455634 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01790.2 vs.
Match: EWM29082.1 (putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana]; EWM29083.1 putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana]) HSP 1 Score: 169.5 bits (428), Expect = 9.400e-39 Identity = 102/176 (57.95%), Postives = 119/176 (67.61%), Query Frame = 0
Query: 1 MRVRLRYLTCKLDL-PLQADTARKKTTAFEILKTIKESIQINFGDFGIAALLNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGG-NSSNSSSTSSTRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVHEEDEEWVKTKRIYYQTQIEGAIQGV 175
MRVRLRYLTCKL L P Q +KK TAF+IL+ IKES+Q NFG+FG A LL S+Q+RYYDEAT IFILRC R+ +RS WAAMTL+TSLGG S NS S+ KA+ISVLRVSGSVRTCR DAV ILV AA + + + E + +YQ QI AIQGV
Sbjct: 1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAAN--------ELEGNNRRPDQESLMAASTAFYQAQISSAIQGV 168
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01790.2 ID=NO01G01790.2|Name=NO01G01790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1372bp TGGGGTAAAACGAGGACTATGTTAGTAAATAATGTGTGCTTGAAAAGTTG CCGCCGTGTGCCTTACGAGCGATAGGAGGATAACAGCGAACGGCTGTGGC TCTTGTGCGTGAGCGGCAGAGAAAAGAGCAGAAATAGAATTATTTGTCTC ACGGTCACACGCGCAATGCTACCACACGCACAGGATAAGGACGGTGGATA GGGAGGAGGGGGGGCAGCCATGCGGGTCCGCCTCCGCTACTTGACTTGCA AACTCGATCTCCCCCTGCAGGCCGATACCGCTCGGAAGAAGACGACTGCG TTTGAAATCCTCAAGACCATCAAGGAATCAATCCAAATTAATTTTGGTGA CTTTGGAATAGCTGCCCTGCTCAATTCTTTGCAGATCCGGTACTATGATG AAGCCACGCACATCTTTATTTTGCGCTGCTCACGCGAAGGCTACCGCTCC GCCTGGGCAGCCATGACCCTACTTACTTCCCTCGGTGGCGGTAACAGCAG TAACAGCAGCAGTACTAGTAGCACTCGTACTAAAGCAAGTATAAGCGTGT TACGTGTTTCGGGCTCCGTGCGCACGTGTCGGACAGACGCGGTAGAGATC CTGGTAATGGCTGCGAAAGCAGCAGCAGCGGCGTGTGTTTTGCAACAGCA GATGGAGGAAGTCCACGAAGAGGACGAGGAGTGGGTAAAAACCAAGCGCA TTTACTACCAGACGCAAATTGAAGGGGCCATCCAAGGCGTGTAAAAAGAG ACGACACAGGTAGGTTGTACAATGAGGGGGAAGAGAAGGGTAGCACACAC GTGTGGATGAAGCTGGGTGAGGAGAGGAAAGGAGCACATAGTAAAAGCGG GTGTGGCGCCAAGGAATCTCCCCGCGCCCATGCGTACATTAATGATGCCA GAAGAAACCACATCGCTTAAAACAACTGCAATGCTCACGTTTGTCCATGA CTTGCTGTTGTGCCGCGGTGTGACATGCACTTTATGTAAAGTTGAAAAAA ACGCTTGTTCTTCGACACTTGTTCAAGTATCCCTTCCGTGTTTCTGAGAA ATAGAAGAGAAGAGAAATATGTAGGTATGGAAAGATGTATACTCTTCGAA TTTTCGTGACTTCTCTTTCGCTCTCCCCTCTGCACACCAAAGCAGAGGTT GGAAACAAAGGCCAAGCATCATCCTGGAGTTTTATCACATGCACCACTCT TACCGGAGACCAAGACACTCAGGCCCTACAGCTGTTAACATCAATATCAA GGAGACAAGGCATTGAATAAATGAAAACACTCACACAAGAGACCGAGTGG ATAGATGCTGAATAGCCCAGCCTAAAGAAAAGTAATGGACATAAGTAAAT ATGACATGACGACAAGGGTGGA back to topprotein sequence of NO01G01790.2 >NO01G01790.2-protein ID=NO01G01790.2-protein|Name=NO01G01790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp MRVRLRYLTCKLDLPLQADTARKKTTAFEILKTIKESIQINFGDFGIAAL LNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGGNSSNSSSTS STRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVHE EDEEWVKTKRIYYQTQIEGAIQGV* back to topmRNA from alignment at chr1:453729..455634- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01790.2 ID=NO01G01790.2|Name=NO01G01790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp|location=Sequence derived from alignment at chr1:453729..455634- (Nannochloropsis oceanica) TGGGGTAAAACGAGGACTATGTTAGTAAATAATGTGTGCTTGAAAAGTTG
CCGCCGTGTGCCTTACGAGCGATAGGAGGATAACAGCGAACGGCTGTGGC
TCTTGTGCGTGAGCGGCAGAGAAAAGAGCAGAAATAGAATTATTTGTCTC
ACGGTCACACGCGCAATGCTACCACACGCACAGGATAAGGACGGTGGATA
GGGAGGAGGGGGGGCAGCCATGCGGGTCCGCCTCCGCTACTTGACTTGCA
AACTCGATCTCCCCCTGCAGGCCGATACCGCTCGGAAGAAGACGACTGCG
TTTGAAATCCTCAAGACCATCAAGGTGAGGGCACTGCACACGGAAGGCAT
AGAGTGGAGAGGGACAAGGGGGGGGGCACAGATATTTTCATGAGACCCGT
CATCATCTCTCTCGACCTCCCGGCTGTCGGGCTTTCGGTCCCCCTCACTC
TCCACCACCCTGCCTCACGCTTCGCGATGGTGGGTTGCGAACGACTCGCA
TATCCGAGACATTCAGTATAAGCTTGGACTGTTGACATGCCTGCAATGAC
TGTGCCAGTTGTTCATGCTTGTGCTTGTGGTCTTGTGAGCAGTTTTGTGA
GGCCCCTCGAGGAGAGATTTGAATTGCGCATGCCGAAGCAGGCTGAAACT
GTACCGTCCAGAGCACTACACACACCCTATATATCATGTGCACTTGAACC
ACCTCAAGGCTTGTGCGGCTCTGACACCTGTATGCTCGTTCTTGACCGTA
ATGAATCATTGGAAAATCTTCTCCACTCTCTCGCTTGACCTCCGCACTCA
TCTTCCCCTCCCTCCCCACGCAACTATTCTCACCTCTCCTCCACCGTACC
ACCCACAGGAATCAATCCAAATTAATTTTGGTGACTTTGGAATAGCTGCC
CTGCTCAATTCTTTGCAGATCCGGTACTATGATGAAGCCACGCACATCTT
TATTTTGCGCTGCTCACGCGAAGGCTACCGCTCCGCCTGGGCAGCCATGA
CCCTACTTACTTCCCTCGGTGGCGGTAACAGCAGTAACAGCAGCAGTACT
AGTAGCACTCGTACTAAAGCAAGTATAAGCGTGTTACGTGTTTCGGGCTC
CGTGCGCACGTGTCGGACAGACGCGGTAGAGATCCTGGTAATGGCTGCGA
AAGCAGCAGCAGCGGCGTGTGTTTTGCAACAGCAGATGGAGGAAGTCCAC
GAAGAGGACGAGGAGTGGGTAAAAACCAAGCGCATTTACTACCAGACGCA
AATTGAAGGGGCCATCCAAGGCGTGTAAAAAGAGACGACACAGGTAGGTT
GTACAATGAGGGGGAAGAGAAGGGTAGCACACACGTGTGGATGAAGCTGG
GTGAGGAGAGGAAAGGAGCACATAGTAAAAGCGGGTGTGGCGCCAAGGAA
TCTCCCCGCGCCCATGCGTACATTAATGATGCCAGAAGAAACCACATCGC
TTAAAACAACTGCAATGCTCACGTTTGTCCATGACTTGCTGTTGTGCCGC
GGTGTGACATGCACTTTATGTAAAGTTGAAAAAAACGCTTGTTCTTCGAC
ACTTGTTCAAGTATCCCTTCCGTGTTTCTGAGAAATAGAAGAGAAGAGAA
ATATGTAGGTATGGAAAGATGTATACTCTTCGAATTTTCGTGACTTCTCT
TTCGCTCTCCCCTCTGCACACCAAAGCAGAGGTTGGAAACAAAGGCCAAG
CATCATCCTGGAGTTTTATCACATGCACCACTCTTACCGGAGACCAAGAC
ACTCAGGCCCTACAGCTGTTAACATCAATATCAAGGAGACAAGGCATTGA
ATAAATGAAAACACTCACACAAGAGACCGAGTGGATAGATGCTGAATAGC
CCAGCCTAAAGAAAAGTAATGGACATAAGTAAATATGACATGACGACAAG
GGTGGA back to topCoding sequence (CDS) from alignment at chr1:453729..455634- >NO01G01790.2 ID=NO01G01790.2|Name=NO01G01790.2|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr1:453729..455634- (Nannochloropsis oceanica) ATGCGGGTCCGCCTCCGCTACTTGACTTGCAAACTCGATCTCCCCCTGCA GGCCGATACCGCTCGGAAGAAGACGACTGCGTTTGAAATCCTCAAGACCA TCAAGGAATCAATCCAAATTAATTTTGGTGACTTTGGAATAGCTGCCCTG CTCAATTCTTTGCAGATCCGGTACTATGATGAAGCCACGCACATCTTTAT TTTGCGCTGCTCACGCGAAGGCTACCGCTCCGCCTGGGCAGCCATGACCC TACTTACTTCCCTCGGTGGCGGTAACAGCAGTAACAGCAGCAGTACTAGT AGCACTCGTACTAAAGCAAGTATAAGCGTGTTACGTGTTTCGGGCTCCGT GCGCACGTGTCGGACAGACGCGGTAGAGATCCTGGTAATGGCTGCGAAAG CAGCAGCAGCGGCGTGTGTTTTGCAACAGCAGATGGAGGAAGTCCACGAA GAGGACGAGGAGTGGGTAAAAACCAAGCGCATTTACTACCAGACGCAAAT TGAAGGGGCCATCCAAGGCGTGTAA back to top
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