NO01G01750, NO01G01750 (gene) Nannochloropsis oceanica

Overview
NameNO01G01750
Unique NameNO01G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2071
Alignment locationchr1:443790..445860 +

Link to JBrowse

Properties
Property NameValue
DescriptionTHUMP domain-containing protein 3
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:443790..445860 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR000241RNA_methylase_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
BLAST of NO01G01750 vs. NCBI_GenBank
Match: CBJ26567.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 173.7 bits (439), Expect = 1.500e-39
Identity = 122/322 (37.89%), Postives = 169/322 (52.48%), Query Frame = 0
Query:  133 EAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPL-GLTWTE------------KLKSTTEPL------NVKFRASVLRDGAHAYRGMDMLPVVGDGA-SIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPPILFREGV-TACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKRHKHKGGRMVHLYERAFREMARVIRPGGRLLLLASR 434
            EA LA L ++  D+  W AAIN+W R +    R T        G++ TE            +++    P+       +KFRASV+RDG H +  ++  P +G    S+  G     VDLKGYD+EVVA +L++ V +GL LD DR    S+    +        G   + LRPSTA L++ M +P VGD++VD M GVGTIPF+ A     FP V  +GG+  + A  ++R N + LR    GRA   G AG      G   WDA+ LPLR G VD  +VD+PFG +      +   LY     EMARV+RP GR +LL ++
Sbjct:   50 EAALARLESLVTDSPLWPAAINVWKRFKVSQARSTQAAAAGAGGVSGTEPRDCPALGRPGQEMEDAPRPVGDIDVAGLKFRASVVRDGQHPFSSVEASPRLGGAVWSVNRG---WTVDLKGYDVEVVAFILERGVAVGLALDGDRTKRCSHGRVPKEDKGFIETGKRMSSLRPSTAYLMLRMAEPVVGDVIVDCMCGVGTIPFLGAGW---FPGVCLVGGEIDDSAIDHLRRNAQSLRRSPAGRA---GAAG------GACAWDAQSLPLRDGSVDAMVVDMPFG-QSCGTPRQNARLYPLVMAEMARVLRPSGRAVLLVTQ 355          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: XP_008878786.1 (hypothetical protein H310_13168 [Aphanomyces invadans] >ETV92479.1 hypothetical protein H310_13168 [Aphanomyces invadans])

HSP 1 Score: 149.1 bits (375), Expect = 4.000e-32
Identity = 131/410 (31.95%), Postives = 183/410 (44.63%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPP---ILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKRHKHKGGRMVHLYERAFREMARVIRPGGRLLLLASRASYVEEALQSRMSEGCWSQQEQQDEKEEKLKGDTPLFNSKRVNIGGLRAVLYLVIRTT--APLP 496
            G A  GK++L T  P   V +L  +   LAYV     +  +  AGLA + A+   A  W  ++ +W   R+    D +R                       FRAS +RDG HAY    +   V  GA++   +    V L  +++EVVA+VL  HV LGL L  +  T   NF   R+ P    L      + LRPSTA +++ + +   GD+V+D M GVGT+P  A       P V  +GGD S EA      NFK                  RAA+    +W A  LPLR   VD  LVD+PFG R  +   +   LY +A  +MARV+RPGG  +LLA     V  ++  R+      ++E Q                  VNIGGL   L+++ +    AP P
Sbjct:   49 GEAAVGKILLHTTSPQVDVKSLCSIQACLAYVAHASDIDTDTPAGLAQIGALVEHAPVWKDSVAVWRSGRENAATDGLR-----------------------FRASCVRDGKHAYSSETIAGEV--GAAVLKRQTGWTVSLVDFNVEVVALVLHHHVVLGLSLAENSKTV--NFRGGRLAPEPCRLASLDYISTLRPSTAYMMLQLAKCDAGDVVLDCMCGVGTLPACAVLWG---PSVFGIGGDVSSEAIAQAHVNFKC----------------HRAAI---CQWSAEKLPLRPNSVDRILVDMPFGMRCGNP-VKNARLYPKAIGDMARVLRPGGVAVLLAMSKKLVVHSV--RLVPSLTIKEELQ------------------VNIGGLGVGLFVIQKNALMAPAP 388          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: OQR82876.1 (replication factor C subunit 2 [Achlya hypogyna])

HSP 1 Score: 142.1 bits (357), Expect = 4.900e-30
Identity = 129/427 (30.21%), Postives = 188/427 (44.03%), Query Frame = 0
Query:   30 YLLLCVGGLEEDAVAAARAYFHARQGSEEWVEKRDGRVGDAASSPWTAHFRVFEIDDEDRVGNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLGLVL-DNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR-HKHKGGRMVHLYERAFREMARVIRPGGRLLLLASRASYVEEALQSRMSEGCWSQQE 455
            YLLL + GLE+ AVA      HA+      +E    +V      P       F   D +R G A  GK++L+T      V +L  +   LAY+ E   +  +   G+  +  +   A  W A + LWA               P  +       +TT+P   +FRAS +RDG HAY       + G+     L     KV L  +D+EVV +VL   +  GL L D  +V F S    E   P +      + LRPSTA +L+ + +   GD+V+D M GVGTIP  A  +    P + ALGGD   +A      N  + R                     + RWD++ LPLR   VD  ++D+PFG R   H+  +   LY R   E+ RV+R  GR++LL      ++  L ++ + G    QE
Sbjct:  321 YLLLVIRGLEDLAVAE----IHAK------LEVVSVKVITPQPDP------QFPQRDYER-GEAAVGKIVLETTSLPATVKSLCSVQAFLAYIVEADNVITDDAKGIDQIGKIVEGAD-WTAPLALWA------------AHAPTAM-------ATTDPA-FRFRASCVRDGKHAYNSE---KIAGEVGGTLLDHFGWKVSLTEFDMEVVCVVLHNFLVCGLSLADPRKVFFKSRLANEERHPSMMSIQYISTLRPSTAYMLLQLARIEAGDIVLDAMCGVGTIPASATYLK---PSIFALGGDVEADAVEKAALNMTHRR-------------------ASVCRWDSQRLPLRSASVDKIVIDMPFGVRCGSHQ--KNSKLYPRCMAELNRVLRVNGRVVLLVMSKKLIKSCLNNKNTAGLVILQE 682          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: OQS02102.1 (replication factor C subunit 2 [Thraustotheca clavata])

HSP 1 Score: 141.0 bits (354), Expect = 1.100e-29
Identity = 112/355 (31.55%), Postives = 164/355 (46.20%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLGLVL-DNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR---HKHKGGRMVHLYERAFREMARVIRPGGRLLLLASRASYVEEAL 442
            G A  GKL+L+T      V AL  +   LA++ E + ++ E  +G+  +  +   A  W AA+ LWA          + + +P           T++P + +FRAS +RDG HAY    +   VG     + G    KV L  + +EVV  VL  H+  GL L D  ++ F S    E   P +      + LRPSTA +L+ +     GD+V+D M GVGTIP  A  +P P   + A+GGD   +A              M G               G+ RWD++ LPLR   VD  ++D+PFG R   H+  G     LY R   E+ RV+R  GR++LL      ++  L
Sbjct:  365 GEAAVGKLVLETTSSTAQVKALCSIQAFLAFLTEANDINVEDASGMDQISQIVASAD-WKAALELWAA--------HMASSVP-----------TSDP-SFRFRASCVRDGKHAYNSEKIAGEVGGTIFEQFG---WKVSLTEFHMEVVCFVLHNHLVCGLSLADPRKIFFKSRLANEERHPSMKSIQYISTLRPSTAYMLLQLANIEAGDIVLDAMCGVGTIPASATYLPSP---LFAIGGDVDTDA------------VTMAG-------INVTNRFAGVCRWDSQRLPLRDQSVDKIVIDMPFGVRCGSHQKNG----KLYPRCMAELNRVLRVNGRIVLLVMSKKLIKSCL 669          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: XP_008607884.1 (hypothetical protein SDRG_04013 [Saprolegnia diclina VS20] >EQC38292.1 hypothetical protein SDRG_04013 [Saprolegnia diclina VS20])

HSP 1 Score: 137.9 bits (346), Expect = 9.200e-29
Identity = 110/356 (30.90%), Postives = 163/356 (45.79%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLGLVL-DNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR-HKHKGGRMVHLYERAFREMARVIRPGGRLLLLASRASYVEEALQSR 445
            G A  GK++L+T      V +L  +   LA+V E + +  +  AG+  +  +   A  W A ++LW            +   P           T+E  + +FRAS +RDG HAY    +   VG       G    KV L  + +EVV  VL  HV  G+ L D  ++ F S    E   P +      + LRPSTA +L+ + +   GD+V+D M GVGTIP  A  +  P   V ALGGD  E+A                   E+ G     A    + +WD++ LPLR G VD  ++D+PFG R   H+  +   LY R   E+ RV+R  GR++LL      ++  L ++
Sbjct:   47 GEAAVGKIVLETTSSPGEVKSLCSIQAFLAFVVEANDVVTDDVAGMVQIGKLVETAD-WSAPLSLW------------QAHAPTA--------PTSENESFRFRASCVRDGKHAYNSEKIAGEVGGALLEHFG---WKVSLTEFHMEVVCFVLHNHVVCGVSLADPRKIFFKSRLANEERHPSMTSIQYISTLRPSTAYMLLQLARIEAGDIVLDAMCGVGTIPASATYLAAP---VFALGGDVEEDA------------------VEKAGR-NVAARPATICQWDSQRLPLRDGSVDKIVIDMPFGVRCGSHQ--KNSKLYPRCMAELCRVLRDHGRIVLLVMSKKLIKGCLGNK 354          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: POM63353.1 (Hypothetical protein PHPALM_21263, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 134.4 bits (337), Expect = 1.000e-27
Identity = 99/342 (28.95%), Postives = 152/342 (44.44%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR--HKHKGGRMVHLYERAFREMARVIRPGGRLLLL 431
            G A  G++IL T      V  L  +   LA++ +   +  E +AG+  +  +  +A  WDAA+ L                      W E      +   +KFR S +RDG H Y    +   VG     + G     V+L  +DLEVV ++  + +  G+ L + R     N         L      + LRPSTA L++ + Q + GD+V+D M G+GT+P  +A       +V ALGG+  E   G   +N                    R   V + RWD+  LPLR   VD  ++D+PFG R  ++ +  +M   Y + F+E+ RV+RP GR +LL
Sbjct:   51 GQAAVGRIILQTKSSAAEVQELRSVQATLAFLAKSDEIDTESDAGVKQIGQLVMEAD-WDAAVKL----------------------WKEHAVHPVDDNEIKFRGSCVRDGKHKYNSQVVAGEVGARVVDKFG---WNVNLTEFDLEVVVVIFYKFMVAGIALADPRKIQFRNRLANETRSALADSQYVSTLRPSTAYLMLQLAQHKYGDVVLDSMCGIGTLPICSADFTN--DEVYALGGELDELPSGKAGQNVL-----------------TRPRPVDIARWDSTRLPLRSHSVDRVMIDMPFGVRCGNQRQNNKM---YPKVFKELLRVLRPDGRAVLL 344          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: ETI35743.1 (hypothetical protein F443_17963 [Phytophthora parasitica P1569])

HSP 1 Score: 131.3 bits (329), Expect = 8.600e-27
Identity = 102/343 (29.74%), Postives = 155/343 (45.19%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKH-VKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR--HKHKGGRMVHLYERAFREMARVIRPGGRLLLL 431
            G A  G++IL T      V  L  +   LA + +   +  E +AG+  +  +  +A  WD+A+ LW        + ++R                 E   +KFR S +RDG H Y       V+      R+ EK    V+L  +DLEVV I+  + +  G+ L + R     N         L      + LRPSTA L++ + Q + GD+V+D M G+GT+P  +A        V ALGG+  E   G   +N                 A  R   V + RWD+  LPLR   VD  ++D+PFG R  ++ +  +M   Y + F+E+ RV+RP GR +LL
Sbjct:   51 GQAAVGRIILQTKSSAAEVQELRSVQATLALLAKSGEIDTESDAGVKQIGQLVQNAD-WDSAVKLW-------KQHSVR---------------PVEDSEIKFRGSCVRDGKHKYNSQ----VIAGEVGARVVEKFGWAVNLTEFDLEVVVIIFYKFMVAGIALADPRKIQFRNRLANESRSALADSDYISTLRPSTAYLMLQLAQHKYGDVVLDSMCGIGTLPICSADFTN--DGVYALGGELDELPSGKAGQN-----------------AVTRPRPVDIARWDSTRLPLRSHSVDRVMIDMPFGVRCGNQRQNNKM---YPKVFKELLRVLRPDGRAVLL 344          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: ETK76015.1 (hypothetical protein L915_17481 [Phytophthora parasitica] >ETL29453.1 hypothetical protein L916_17374 [Phytophthora parasitica])

HSP 1 Score: 131.3 bits (329), Expect = 8.600e-27
Identity = 102/343 (29.74%), Postives = 155/343 (45.19%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKH-VKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR--HKHKGGRMVHLYERAFREMARVIRPGGRLLLL 431
            G A  G++IL T      V  L  +   LA + +   +  E +AG+  +  +  +A  WD+A+ LW        + ++R                 E   +KFR S +RDG H Y       V+      R+ EK    V+L  +DLEVV I+  + +  G+ L + R     N         L      + LRPSTA L++ + Q + GD+V+D M G+GT+P  +A        V ALGG+  E   G   +N                 A  R   V + RWD+  LPLR   VD  ++D+PFG R  ++ +  +M   Y + F+E+ RV+RP GR +LL
Sbjct:   51 GQAAVGRIILQTKSSAAEVQELRSVQATLALLAKSGEIDTESDAGVKQIGQLVQNAD-WDSAVKLW-------KQHSVR---------------PVEDSEIKFRGSCVRDGKHKYNSQ----VIAGEVGARVVEKFGWAVNLTEFDLEVVVIIFYKFMVAGIALADPRKIQFRNRLANESRSALADSDYISTLRPSTAYLMLQLAQHKYGDVVLDSMCGIGTLPICSADFTN--DGVYALGGELDELPSGKAGQN-----------------AVTRPRPVDIARWDSTRLPLRSHSVDRVMIDMPFGVRCGNQRQNNKM---YPKVFKELLRVLRPDGRAVLL 344          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: ETL82668.1 (hypothetical protein L917_17209 [Phytophthora parasitica])

HSP 1 Score: 131.3 bits (329), Expect = 8.600e-27
Identity = 102/343 (29.74%), Postives = 155/343 (45.19%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKH-VKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR--HKHKGGRMVHLYERAFREMARVIRPGGRLLLL 431
            G A  G++IL T      V  L  +   LA + +   +  E +AG+  +  +  +A  WD+A+ LW        + ++R                 E   +KFR S +RDG H Y       V+      R+ EK    V+L  +DLEVV I+  + +  G+ L + R     N         L      + LRPSTA L++ + Q + GD+V+D M G+GT+P  +A        V ALGG+  E   G   +N                 A  R   V + RWD+  LPLR   VD  ++D+PFG R  ++ +  +M   Y + F+E+ RV+RP GR +LL
Sbjct:   51 GQAAVGRIILQTKSSAAEVQELRSVQATLALLAKSGEIDTESDAGVKQIGQLVQNAD-WDSAVKLW-------KQHSVR---------------PVEDSEIKFRGSCVRDGKHKYNSQ----VIAGEVGARVVEKFGWAVNLTEFDLEVVVIIFYKFMVAGIALADPRKIQFRNRLANESRSALADSDYISTLRPSTAYLMLQLAQHKYGDVVLDSMCGIGTLPICSADFTN--DGVYALGGELDELPSGKAGQN-----------------AVTRPRPVDIARWDSTRLPLRSHSVDRVMIDMPFGVRCGNQRQNNKM---YPKVFKELLRVLRPDGRAVLL 344          
BLAST of NO01G01750 vs. NCBI_GenBank
Match: ETM35915.1 (hypothetical protein L914_17273 [Phytophthora parasitica])

HSP 1 Score: 131.3 bits (329), Expect = 8.600e-27
Identity = 102/343 (29.74%), Postives = 155/343 (45.19%), Query Frame = 0
Query:   91 GNAGCGKLILDTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRDGAHAYRGMDMLPVVGDGASIRLGEKH-VKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKR--HKHKGGRMVHLYERAFREMARVIRPGGRLLLL 431
            G A  G++IL T      V  L  +   LA + +   +  E +AG+  +  +  +A  WD+A+ LW        + ++R                 E   +KFR S +RDG H Y       V+      R+ EK    V+L  +DLEVV I+  + +  G+ L + R     N         L      + LRPSTA L++ + Q + GD+V+D M G+GT+P  +A        V ALGG+  E   G   +N                 A  R   V + RWD+  LPLR   VD  ++D+PFG R  ++ +  +M   Y + F+E+ RV+RP GR +LL
Sbjct:   51 GQAAVGRIILQTKSSAAEVQELRSVQATLALLAKSGEIDTESDAGVKQIGQLVQNAD-WDSAVKLW-------KQHSVR---------------PVEDSEIKFRGSCVRDGKHKYNSQ----VIAGEVGARVVEKFGWAVNLTEFDLEVVVIIFYKFMVAGIALADPRKIQFRNRLANESRSALADSDYISTLRPSTAYLMLQLAQHKYGDVVLDSMCGIGTLPICSADFTN--DGVYALGGELDELPSGKAGQN-----------------AVTRPRPVDIARWDSTRLPLRSHSVDRVMIDMPFGVRCGNQRQNNKM---YPKVFKELLRVLRPDGRAVLL 344          
The following BLAST results are available for this feature:
BLAST of NO01G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ26567.11.500e-3937.89conserved unknown protein [Ectocarpus siliculosus][more]
XP_008878786.14.000e-3231.95hypothetical protein H310_13168 [Aphanomyces invad... [more]
OQR82876.14.900e-3030.21replication factor C subunit 2 [Achlya hypogyna][more]
OQS02102.11.100e-2931.55replication factor C subunit 2 [Thraustotheca clav... [more]
XP_008607884.19.200e-2930.90hypothetical protein SDRG_04013 [Saprolegnia dicli... [more]
POM63353.11.000e-2728.95Hypothetical protein PHPALM_21263, partial [Phytop... [more]
ETI35743.18.600e-2729.74hypothetical protein F443_17963 [Phytophthora para... [more]
ETK76015.18.600e-2729.74hypothetical protein L915_17481 [Phytophthora para... [more]
ETL82668.18.600e-2729.74hypothetical protein L917_17209 [Phytophthora para... [more]
ETM35915.18.600e-2729.74hypothetical protein L914_17273 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008179NSK008179Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01750.1NO01G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627664gene_153Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01750.1NO01G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01750 ID=NO01G01750|Name=NO01G01750|organism=Nannochloropsis oceanica|type=gene|length=2071bp
CTTTATGAGACTTTGGATTGCGCTTTGTCGAACCGGCATCACTTACACTT
CACATGCCCACTCCCCTGTGATGCGATCTCTGCGTACGTTCCCAACCTCG
GGCCTCCCGACCTCATTCGTCCTTGCTGACAAAAGCTAAAACTACTCGAT
ACACACACAAGAATCTAACACAAACAAGCTTTTTTCGTCGTGGGCGTGAA
GATGCAGGAGGAAGTGTTGGCGGTGAAATTCAATCCATTTCCCCTGCAGC
AGCGAGAGGCCCACACAGCCTCTCCTCCCCTCGACACCTATCTGCTCTTG
TGCGTCGGCGGTCTGGAGGAGGATGCTGTGGCGGCAGCTCGGGCCTATTT
TCATGCCAGACAGGGCAGCGAGGAATGGGTAGAGAAGAGGGATGGGAGGG
TCGGAGACGCAGCGTCTTCTCCATGGACAGCACACTTCCGCGTCTTTGAA
ATAGACGACGAGGACCGCGTTGGCAACGCAGGGTGTGGGAAGCTTATCCT
GGACACAAATGTGCCCATGAAAGTTGTCTTGGCATTACCGTTCCTCCTAG
GTGTTCTGGCATACGTGGGGGAAGATCACTTCCTGTCACCAGAGCGGGAG
GCGGGCTTAGCCCATTTGCGTGCCGTGACCCACGATGCCAGCCATTGGGA
TGCAGCCATAAACCTGTGGGCCCGTGCACGCGACTTTTATACTAGGGATA
CCATCCGTACTGACATCCCATTAGGCCTGACCTGGACCGAAAAGCTCAAG
TCTACGACCGAGCCTCTAAACGTGAAATTTCGCGCGTCCGTCTTGAGGGA
TGGCGCGCACGCATACAGAGGAATGGATATGTTGCCTGTCGTAGGCGATG
GTGCATCGATTCGCCTAGGCGAGAAACACGTCAAAGTAGATTTGAAGGGC
TACGACTTGGAAGTTGTTGCCATCGTCCTCCAGCAGCACGTGCATTTAGG
TCTTGTCTTGGACAATGATAGAGTAACTTTCAGTTCCAATTTTCCCCCCG
AACGCGTTCCTCCTATCCTCTTCCGAGAGGGTGTAACTGCCTGCCTACGC
CCAAGCACTGCCCGTCTCTTGATAGCCATGTGCCAACCACGCGTAGGAGA
CATGGTGGTTGATTTCATGGCGGGCGTCGGAACTATCCCATTTGTTGCTG
CAGCGATACCACCACCCTTCCCTCAGGTCCTTGCCTTGGGTGGGGACGAG
AGCGAGGAGGCGGGGGGATATATGCGGGAGAATTTTAAATATTTACGGGA
ACAGATGGGTGGACGCGCCGAGAGGACAGGGGAAGCTGGGCAACGTGCGG
CTGTCGTCGGACTTGTACGTTGGGATGCCCGGTGTCTGCCTTTGAGACAT
GGGGTGGTAGACGTCGCGCTTGTGGATTTGCCGTTTGGAAAGCGCCACAA
GCATAAAGGAGGAAGGATGGTGCATTTATACGAACGGGCTTTTCGTGAGA
TGGCTCGAGTGATCCGCCCGGGGGGGCGGTTGTTGTTGTTGGCGTCGCGC
GCATCATATGTGGAGGAGGCGTTGCAGAGCCGTATGTCTGAGGGGTGCTG
GTCCCAACAGGAGCAGCAGGATGAGAAAGAAGAGAAACTGAAAGGAGATA
CCCCATTGTTTAACTCGAAGCGGGTAAATATTGGGGGTCTGAGGGCTGTG
TTGTATTTGGTAATACGTACTACGGCTCCCCTCCCAGTAATGCTGGAGAG
ACCGGAGAAGGAGGAGCGGAAAGCCGTGCGACGACGTGCTTGGGATAACA
GATCGACGAAGCAAGATGAGATCAGAGAACGAACGGGGATATAAATGTAG
CATAATGATAAAGGGAAGCACAAGAAATCTCAACGTGATAATTTAGTACT
CATTTGTTTTTTGCGGGACATGTTCTTTGTGATGCTTTGTCTTGCATGGG
CTTTACTTACCATTTCTCTTCAACCTGATGTTTTTGCTTACTTACTTTCA
GGACTAGCCAGCGAATCAATTGTAAATGAAAAGTACCCTGATTCCTGAAA
AAAATCTTGAGTGAAAGCTCATGTCATAATCCTACATGCATCTTAATCTC
CCTTACTCCACCCCTCCCTCC
back to top

protein sequence of NO01G01750.1

>NO01G01750.1-protein ID=NO01G01750.1-protein|Name=NO01G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MQEEVLAVKFNPFPLQQREAHTASPPLDTYLLLCVGGLEEDAVAAARAYF
HARQGSEEWVEKRDGRVGDAASSPWTAHFRVFEIDDEDRVGNAGCGKLIL
DTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWD
AAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRD
GAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLG
LVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGD
MVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLRE
QMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKRHK
HKGGRMVHLYERAFREMARVIRPGGRLLLLASRASYVEEALQSRMSEGCW
SQQEQQDEKEEKLKGDTPLFNSKRVNIGGLRAVLYLVIRTTAPLPVMLER
PEKEERKAVRRRAWDNRSTKQDEIRERTGI*
back to top
Synonyms
Publications