NO01G01750.1, NO01G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01750.1
Unique NameNO01G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2071
Alignment locationchr1:443790..445860 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:443790..445860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01750.1 vs.
Match: CBJ26567.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 174.1 bits (440), Expect = 1.200e-39
Identity = 122/322 (37.89%), Postives = 169/322 (52.48%), Query Frame = 0 
Query:  133 EAGLAHLRAVTHDASHWDAAINLWARARDFYTRDTIRTDIPLG-LTWTE------------KLKSTTEPLN------VKFRASVLRDGAHAYRGMDMLPVVGDGA-SIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLGLVLDNDRVTFSSNFPPERVPPILFREGVT-ACLRPSTARLLIAMCQPRVGDMVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLREQMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKRHKHKGGRMVHLYERAFREMARVIRPGGRLLLLASR 434
            EA LA L ++  D+  W AAIN+W R +    R T       G ++ TE            +++    P+       +KFRASV+RDG H +  ++  P +G    S+  G     VDLKGYD+EVVA +L++ V +GL LD DR    S+    +        G   + LRPSTA L++ M +P VGD++VD M GVGTIPF+ A     FP V  +GG+  + A  ++R N + LR    GRA   G AG      G   WDA+ LPLR G VD  +VD+PFG +      +   LY     EMARV+RP GR +LL ++
Sbjct:   50 EAALARLESLVTDSPLWPAAINVWKRFKVSQARSTQAAAAGAGGVSGTEPRDCPALGRPGQEMEDAPRPVGDIDVAGLKFRASVVRDGQHPFSSVEASPRLGGAVWSVNRGWT---VDLKGYDVEVVAFILERGVAVGLALDGDRTKRCSHGRVPKEDKGFIETGKRMSSLRPSTAYLMLRMAEPVVGDVIVDCMCGVGTIPFLGAGW---FPGVCLVGGEIDDSAIDHLRRNAQSLRRSPAGRA---GAAG------GACAWDAQSLPLRDGSVDAMVVDMPFG-QSCGTPRQNARLYPLVMAEMARVLRPSGRAVLLVTQ 355
The following BLAST results are available for this feature:
BLAST of NO01G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26567.11.200e-3937.89conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01750NO01G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01750.1NO01G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01750.1.cds1NO01G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01750.1 ID=NO01G01750.1|Name=NO01G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp
CTTTATGAGACTTTGGATTGCGCTTTGTCGAACCGGCATCACTTACACTT
CACATGCCCACTCCCCTGTGATGCGATCTCTGCGTACGTTCCCAACCTCG
GGCCTCCCGACCTCATTCGTCCTTGCTGACAAAAGCTAAAACTACTCGAT
ACACACACAAGAATCTAACACAAACAAGCTTTTTTCGTCGTGGGCGTGAA
GATGCAGGAGGAAGTGTTGGCGGTGAAATTCAATCCATTTCCCCTGCAGC
AGCGAGAGGCCCACACAGCCTCTCCTCCCCTCGACACCTATCTGCTCTTG
TGCGTCGGCGGTCTGGAGGAGGATGCTGTGGCGGCAGCTCGGGCCTATTT
TCATGCCAGACAGGGCAGCGAGGAATGGGTAGAGAAGAGGGATGGGAGGG
TCGGAGACGCAGCGTCTTCTCCATGGACAGCACACTTCCGCGTCTTTGAA
ATAGACGACGAGGACCGCGTTGGCAACGCAGGGTGTGGGAAGCTTATCCT
GGACACAAATGTGCCCATGAAAGTTGTCTTGGCATTACCGTTCCTCCTAG
GTGTTCTGGCATACGTGGGGGAAGATCACTTCCTGTCACCAGAGCGGGAG
GCGGGCTTAGCCCATTTGCGTGCCGTGACCCACGATGCCAGCCATTGGGA
TGCAGCCATAAACCTGTGGGCCCGTGCACGCGACTTTTATACTAGGGATA
CCATCCGTACTGACATCCCATTAGGCCTGACCTGGACCGAAAAGCTCAAG
TCTACGACCGAGCCTCTAAACGTGAAATTTCGCGCGTCCGTCTTGAGGGA
TGGCGCGCACGCATACAGAGGAATGGATATGTTGCCTGTCGTAGGCGATG
GTGCATCGATTCGCCTAGGCGAGAAACACGTCAAAGTAGATTTGAAGGGC
TACGACTTGGAAGTTGTTGCCATCGTCCTCCAGCAGCACGTGCATTTAGG
TCTTGTCTTGGACAATGATAGAGTAACTTTCAGTTCCAATTTTCCCCCCG
AACGCGTTCCTCCTATCCTCTTCCGAGAGGGTGTAACTGCCTGCCTACGC
CCAAGCACTGCCCGTCTCTTGATAGCCATGTGCCAACCACGCGTAGGAGA
CATGGTGGTTGATTTCATGGCGGGCGTCGGAACTATCCCATTTGTTGCTG
CAGCGATACCACCACCCTTCCCTCAGGTCCTTGCCTTGGGTGGGGACGAG
AGCGAGGAGGCGGGGGGATATATGCGGGAGAATTTTAAATATTTACGGGA
ACAGATGGGTGGACGCGCCGAGAGGACAGGGGAAGCTGGGCAACGTGCGG
CTGTCGTCGGACTTGTACGTTGGGATGCCCGGTGTCTGCCTTTGAGACAT
GGGGTGGTAGACGTCGCGCTTGTGGATTTGCCGTTTGGAAAGCGCCACAA
GCATAAAGGAGGAAGGATGGTGCATTTATACGAACGGGCTTTTCGTGAGA
TGGCTCGAGTGATCCGCCCGGGGGGGCGGTTGTTGTTGTTGGCGTCGCGC
GCATCATATGTGGAGGAGGCGTTGCAGAGCCGTATGTCTGAGGGGTGCTG
GTCCCAACAGGAGCAGCAGGATGAGAAAGAAGAGAAACTGAAAGGAGATA
CCCCATTGTTTAACTCGAAGCGGGTAAATATTGGGGGTCTGAGGGCTGTG
TTGTATTTGGTAATACGTACTACGGCTCCCCTCCCAGTAATGCTGGAGAG
ACCGGAGAAGGAGGAGCGGAAAGCCGTGCGACGACGTGCTTGGGATAACA
GATCGACGAAGCAAGATGAGATCAGAGAACGAACGGGGATATAAATGTAG
CATAATGATAAAGGGAAGCACAAGAAATCTCAACGTGATAATTTAGTACT
CATTTGTTTTTTGCGGGACATGTTCTTTGTGATGCTTTGTCTTGCATGGG
CTTTACTTACCATTTCTCTTCAACCTGATGTTTTTGCTTACTTACTTTCA
GGACTAGCCAGCGAATCAATTGTAAATGAAAAGTACCCTGATTCCTGAAA
AAAATCTTGAGTGAAAGCTCATGTCATAATCCTACATGCATCTTAATCTC
CCTTACTCCACCCCTCCCTCC
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protein sequence of NO01G01750.1

>NO01G01750.1-protein ID=NO01G01750.1-protein|Name=NO01G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MQEEVLAVKFNPFPLQQREAHTASPPLDTYLLLCVGGLEEDAVAAARAYF
HARQGSEEWVEKRDGRVGDAASSPWTAHFRVFEIDDEDRVGNAGCGKLIL
DTNVPMKVVLALPFLLGVLAYVGEDHFLSPEREAGLAHLRAVTHDASHWD
AAINLWARARDFYTRDTIRTDIPLGLTWTEKLKSTTEPLNVKFRASVLRD
GAHAYRGMDMLPVVGDGASIRLGEKHVKVDLKGYDLEVVAIVLQQHVHLG
LVLDNDRVTFSSNFPPERVPPILFREGVTACLRPSTARLLIAMCQPRVGD
MVVDFMAGVGTIPFVAAAIPPPFPQVLALGGDESEEAGGYMRENFKYLRE
QMGGRAERTGEAGQRAAVVGLVRWDARCLPLRHGVVDVALVDLPFGKRHK
HKGGRMVHLYERAFREMARVIRPGGRLLLLASRASYVEEALQSRMSEGCW
SQQEQQDEKEEKLKGDTPLFNSKRVNIGGLRAVLYLVIRTTAPLPVMLER
PEKEERKAVRRRAWDNRSTKQDEIRERTGI*
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mRNA from alignment at chr1:443790..445860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01750.1 ID=NO01G01750.1|Name=NO01G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp|location=Sequence derived from alignment at chr1:443790..445860+ (Nannochloropsis oceanica)
CTTTATGAGACTTTGGATTGCGCTTTGTCGAACCGGCATCACTTACACTT
CACATGCCCACTCCCCTGTGATGCGATCTCTGCGTACGTTCCCAACCTCG
GGCCTCCCGACCTCATTCGTCCTTGCTGACAAAAGCTAAAACTACTCGAT
ACACACACAAGAATCTAACACAAACAAGCTTTTTTCGTCGTGGGCGTGAA
GATGCAGGAGGAAGTGTTGGCGGTGAAATTCAATCCATTTCCCCTGCAGC
AGCGAGAGGCCCACACAGCCTCTCCTCCCCTCGACACCTATCTGCTCTTG
TGCGTCGGCGGTCTGGAGGAGGATGCTGTGGCGGCAGCTCGGGCCTATTT
TCATGCCAGACAGGGCAGCGAGGAATGGGTAGAGAAGAGGGATGGGAGGG
TCGGAGACGCAGCGTCTTCTCCATGGACAGCACACTTCCGCGTCTTTGAA
ATAGACGACGAGGACCGCGTTGGCAACGCAGGGTGTGGGAAGCTTATCCT
GGACACAAATGTGCCCATGAAAGTTGTCTTGGCATTACCGTTCCTCCTAG
GTGTTCTGGCATACGTGGGGGAAGATCACTTCCTGTCACCAGAGCGGGAG
GCGGGCTTAGCCCATTTGCGTGCCGTGACCCACGATGCCAGCCATTGGGA
TGCAGCCATAAACCTGTGGGCCCGTGCACGCGACTTTTATACTAGGGATA
CCATCCGTACTGACATCCCATTAGGCCTGACCTGGACCGAAAAGCTCAAG
TCTACGACCGAGCCTCTAAACGTGAAATTTCGCGCGTCCGTCTTGAGGGA
TGGCGCGCACGCATACAGAGGAATGGATATGTTGCCTGTCGTAGGCGATG
GTGCATCGATTCGCCTAGGCGAGAAACACGTCAAAGTAGATTTGAAGGGC
TACGACTTGGAAGTTGTTGCCATCGTCCTCCAGCAGCACGTGCATTTAGG
TCTTGTCTTGGACAATGATAGAGTAACTTTCAGTTCCAATTTTCCCCCCG
AACGCGTTCCTCCTATCCTCTTCCGAGAGGGTGTAACTGCCTGCCTACGC
CCAAGCACTGCCCGTCTCTTGATAGCCATGTGCCAACCACGCGTAGGAGA
CATGGTGGTTGATTTCATGGCGGGCGTCGGAACTATCCCATTTGTTGCTG
CAGCGATACCACCACCCTTCCCTCAGGTCCTTGCCTTGGGTGGGGACGAG
AGCGAGGAGGCGGGGGGATATATGCGGGAGAATTTTAAATATTTACGGGA
ACAGATGGGTGGACGCGCCGAGAGGACAGGGGAAGCTGGGCAACGTGCGG
CTGTCGTCGGACTTGTACGTTGGGATGCCCGGTGTCTGCCTTTGAGACAT
GGGGTGGTAGACGTCGCGCTTGTGGATTTGCCGTTTGGAAAGCGCCACAA
GCATAAAGGAGGAAGGATGGTGCATTTATACGAACGGGCTTTTCGTGAGA
TGGCTCGAGTGATCCGCCCGGGGGGGCGGTTGTTGTTGTTGGCGTCGCGC
GCATCATATGTGGAGGAGGCGTTGCAGAGCCGTATGTCTGAGGGGTGCTG
GTCCCAACAGGAGCAGCAGGATGAGAAAGAAGAGAAACTGAAAGGAGATA
CCCCATTGTTTAACTCGAAGCGGGTAAATATTGGGGGTCTGAGGGCTGTG
TTGTATTTGGTAATACGTACTACGGCTCCCCTCCCAGTAATGCTGGAGAG
ACCGGAGAAGGAGGAGCGGAAAGCCGTGCGACGACGTGCTTGGGATAACA
GATCGACGAAGCAAGATGAGATCAGAGAACGAACGGGGATATAAATGTAG
CATAATGATAAAGGGAAGCACAAGAAATCTCAACGTGATAATTTAGTACT
CATTTGTTTTTTGCGGGACATGTTCTTTGTGATGCTTTGTCTTGCATGGG
CTTTACTTACCATTTCTCTTCAACCTGATGTTTTTGCTTACTTACTTTCA
GGACTAGCCAGCGAATCAATTGTAAATGAAAAGTACCCTGATTCCTGAAA
AAAATCTTGAGTGAAAGCTCATGTCATAATCCTACATGCATCTTAATCTC
CCTTACTCCACCCCTCCCTCC
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Coding sequence (CDS) from alignment at chr1:443790..445860+

>NO01G01750.1 ID=NO01G01750.1|Name=NO01G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr1:443790..445860+ (Nannochloropsis oceanica)
ATGCAGGAGGAAGTGTTGGCGGTGAAATTCAATCCATTTCCCCTGCAGCA
GCGAGAGGCCCACACAGCCTCTCCTCCCCTCGACACCTATCTGCTCTTGT
GCGTCGGCGGTCTGGAGGAGGATGCTGTGGCGGCAGCTCGGGCCTATTTT
CATGCCAGACAGGGCAGCGAGGAATGGGTAGAGAAGAGGGATGGGAGGGT
CGGAGACGCAGCGTCTTCTCCATGGACAGCACACTTCCGCGTCTTTGAAA
TAGACGACGAGGACCGCGTTGGCAACGCAGGGTGTGGGAAGCTTATCCTG
GACACAAATGTGCCCATGAAAGTTGTCTTGGCATTACCGTTCCTCCTAGG
TGTTCTGGCATACGTGGGGGAAGATCACTTCCTGTCACCAGAGCGGGAGG
CGGGCTTAGCCCATTTGCGTGCCGTGACCCACGATGCCAGCCATTGGGAT
GCAGCCATAAACCTGTGGGCCCGTGCACGCGACTTTTATACTAGGGATAC
CATCCGTACTGACATCCCATTAGGCCTGACCTGGACCGAAAAGCTCAAGT
CTACGACCGAGCCTCTAAACGTGAAATTTCGCGCGTCCGTCTTGAGGGAT
GGCGCGCACGCATACAGAGGAATGGATATGTTGCCTGTCGTAGGCGATGG
TGCATCGATTCGCCTAGGCGAGAAACACGTCAAAGTAGATTTGAAGGGCT
ACGACTTGGAAGTTGTTGCCATCGTCCTCCAGCAGCACGTGCATTTAGGT
CTTGTCTTGGACAATGATAGAGTAACTTTCAGTTCCAATTTTCCCCCCGA
ACGCGTTCCTCCTATCCTCTTCCGAGAGGGTGTAACTGCCTGCCTACGCC
CAAGCACTGCCCGTCTCTTGATAGCCATGTGCCAACCACGCGTAGGAGAC
ATGGTGGTTGATTTCATGGCGGGCGTCGGAACTATCCCATTTGTTGCTGC
AGCGATACCACCACCCTTCCCTCAGGTCCTTGCCTTGGGTGGGGACGAGA
GCGAGGAGGCGGGGGGATATATGCGGGAGAATTTTAAATATTTACGGGAA
CAGATGGGTGGACGCGCCGAGAGGACAGGGGAAGCTGGGCAACGTGCGGC
TGTCGTCGGACTTGTACGTTGGGATGCCCGGTGTCTGCCTTTGAGACATG
GGGTGGTAGACGTCGCGCTTGTGGATTTGCCGTTTGGAAAGCGCCACAAG
CATAAAGGAGGAAGGATGGTGCATTTATACGAACGGGCTTTTCGTGAGAT
GGCTCGAGTGATCCGCCCGGGGGGGCGGTTGTTGTTGTTGGCGTCGCGCG
CATCATATGTGGAGGAGGCGTTGCAGAGCCGTATGTCTGAGGGGTGCTGG
TCCCAACAGGAGCAGCAGGATGAGAAAGAAGAGAAACTGAAAGGAGATAC
CCCATTGTTTAACTCGAAGCGGGTAAATATTGGGGGTCTGAGGGCTGTGT
TGTATTTGGTAATACGTACTACGGCTCCCCTCCCAGTAATGCTGGAGAGA
CCGGAGAAGGAGGAGCGGAAAGCCGTGCGACGACGTGCTTGGGATAACAG
ATCGACGAAGCAAGATGAGATCAGAGAACGAACGGGGATATAA
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Synonyms
Publications