NO01G01680, NO01G01680 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01680 vs. NCBI_GenBank
Match: EWM29054.1 (rna binding motif protein 19 [Nannochloropsis gaditana]) HSP 1 Score: 205.7 bits (522), Expect = 2.100e-49 Identity = 160/328 (48.78%), Postives = 179/328 (54.57%), Query Frame = 0
Query: 1 MAPDPPAAAPDAGFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRF---------------------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNPAGEEELSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLTLPTPI--------------AGISDLDYLRSKVKKGLEQEMG 288
MAPDPPA+ +AGFTRLCVKNVPKHVDERRLK HFGQ G VTDAKLLRTK GESRKMAF+GF+TE+EAR AL +FN+TFLDTSRLVVEAAMPRGA+ LPRPWS+YS+GSS F VSKDEFLATMMPRSQTKFWGND++ + E QK + + S R P+G E XXXXXXXXXXXXXXXXXXXXXX G+SDL YLRSKVKKGL+ E+G
Sbjct: 1 MAPDPPAS--NAGFTRLCVKNVPKHVDERRLKEHFGQHGTVTDAKLLRTKTGESRKMAFLGFKTESEARTALAFFNKTFLDTSRLVVEAAMPRGASELPRPWSRYSKGSSHFEKKGAGGKSSSDSDQASKRKYSTVHGEDAGGTAKRLREQSEEAHLVADLGGQEKVGGTKEEDNAKTKKQRRVSKDEFLATMMPRSQTKFWGNDDVGLTSEG------QKLDRGERRXXXXXXXXXXXXXSEHRRPSGGERRGRGVATDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDVGLSDLGYLRSKVKKGLDGEIG 320
BLAST of NO01G01680 vs. NCBI_GenBank
Match: CBN74300.1 (RNA binding protein [Ectocarpus siliculosus]) HSP 1 Score: 141.4 bits (355), Expect = 4.900e-30 Identity = 108/172 (62.79%), Postives = 132/172 (76.74%), Query Frame = 0
Query: 11 DAGFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLV 183
+A TRL VKNVPKHVDE+RL HF ++G V+DAK++RTK G+SR+ AFVGF TE++A AL+Y+NQTFLDTSR+ VE A P+G + RPWSK+SEGSSR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K+EF+A + RS+ +FW ND+ L+
Sbjct: 11 EAPKTRLIVKNVPKHVDEKRLWQHFAERGEVSDAKIVRTKDGKSRQFAFVGFTTESDAEEALKYYNQTFLDTSRIQVERAQPKGNAGIARPWSKHSEGSSR-------AQKLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEEFMAALKKRSEARFWDNDDALL 175
BLAST of NO01G01680 vs. NCBI_GenBank
Match: PTQ42378.1 (hypothetical protein MARPO_0030s0107 [Marchantia polymorpha]) HSP 1 Score: 136.7 bits (343), Expect = 1.200e-28 Identity = 72/164 (43.90%), Postives = 91/164 (55.49%), Query Frame = 0
Query: 15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGND 179
TR+CVKN+P+HV+E RL+ HF + G VTDA+++RT G SR+ FVG+RTE EA A++YFN++F DTSRLV E A GA+ LPRPWS++SEGSS F V EFL M PRS+TK W ND
Sbjct: 3 TRICVKNIPRHVNEDRLREHFAENGEVTDARIIRTSDGRSRQFGFVGYRTEEEAVNAVKYFNRSFFDTSRLVCELAQAVGASNLPRPWSRHSEGSSAF-------DNSHRKKDVESFEVKDVAPRAKKTQTPKTGIQEEENDVQLQEFLQVMQPRSKTKIWAND 159
BLAST of NO01G01680 vs. NCBI_GenBank
Match: PTQ42379.1 (hypothetical protein MARPO_0030s0107 [Marchantia polymorpha]) HSP 1 Score: 136.7 bits (343), Expect = 1.200e-28 Identity = 72/164 (43.90%), Postives = 91/164 (55.49%), Query Frame = 0
Query: 15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGND 179
TR+CVKN+P+HV+E RL+ HF + G VTDA+++RT G SR+ FVG+RTE EA A++YFN++F DTSRLV E A GA+ LPRPWS++SEGSS F V EFL M PRS+TK W ND
Sbjct: 11 TRICVKNIPRHVNEDRLREHFAENGEVTDARIIRTSDGRSRQFGFVGYRTEEEAVNAVKYFNRSFFDTSRLVCELAQAVGASNLPRPWSRHSEGSSAF-------DNSHRKKDVESFEVKDVAPRAKKTQTPKTGIQEEENDVQLQEFLQVMQPRSKTKIWAND 167
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_008865717.1 (hypothetical protein H310_03574 [Aphanomyces invadans] >ETW05940.1 hypothetical protein H310_03574 [Aphanomyces invadans]) HSP 1 Score: 125.9 bits (315), Expect = 2.100e-25 Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 0
Query: 15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELL 182
TRL V+N+P +VD+ +L+ HFG G VTDA +++TK G+SR+ FVGF+TE + AA ++F+++F+DT+R+ V+ A PR + L RPWSKYS+GSSR+ DEF+ TM PRS+TKFW ND+++
Sbjct: 3 TRLFVQNLPLYVDDEKLRKHFGAHGEVTDACVVKTKEGKSRRFGFVGFKTEAQTTAAQKFFDKSFIDTTRINVKVAQPRESEELDRPWSKYSKGSSRYKEKDVVAVDEDTSKVDLNSAKVTKDKTPKETGGF-------------DEFVETMQPRSKTKFWANDDVV 156
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_010693240.1 (PREDICTED: multiple RNA-binding domain-containing protein 1 [Beta vulgaris subsp. vulgaris] >KMS99233.1 hypothetical protein BVRB_2g046710 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 125.9 bits (315), Expect = 2.100e-25 Identity = 77/211 (36.49%), Postives = 112/211 (53.08%), Query Frame = 0
Query: 15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNPAGEEE 226
+R+CVKNVPK+V+E RL+ F Q+G VTDAKL+RT+ G++R+ AF+G+RTE EA A++YFN +++DTSR+ E A GA +PRPWS+Y++ EFL M PRS++K W ND LVVP + + K + RQ +Q LK + NG+++S+R +E
Sbjct: 3 SRICVKNVPKYVNEDRLREFFSQKGEVTDAKLMRTREGKNRQFAFIGYRTEKEAGEAIKYFNNSYMDTSRITCEVAWKVGAVDIPRPWSQYTKEKQETSEKSDKVSSGKAKPDKRSSSMSNENDDP-----------------KLQEFLQVMQPRSKSKLWAND--LVVPTLG-QSGQDKEEHRQVKQALKKL---NGDKTSERKVEMHDE 190
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_024381120.1 (multiple RNA-binding domain-containing protein 1-like [Physcomitrella patens] >PNR50980.1 hypothetical protein PHYPA_010166 [Physcomitrella patens]) HSP 1 Score: 125.6 bits (314), Expect = 2.800e-25 Identity = 73/208 (35.10%), Postives = 105/208 (50.48%), Query Frame = 0
Query: 13 GFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNP 221
G +R+CVKN+P+HV E RL+ HF +G VTDAK++RT+ G +R+ FVG+RTE EA+ A +YF+++F DTSRL E A G LPRPWS++SEGSS+F EFL M PRS++K W ND + + K ++ +++ ++ K E S+R P
Sbjct: 5 GSSRICVKNLPRHVTEERLREHFAAKGEVTDAKIIRTRDGRTRQFGFVGYRTEEEAKDAAKYFHRSFFDTSRLTCELAQAVGDPNLPRPWSRHSEGSSKF-----KPKSDDVVENPTTSAKDTGKFKKNQDFRSKTADSELENDPQLQEFLEVMQPRSKSKLWANDTKIASNGSDSASKHGKQKQGSKKEKKASVEMKTVETFSRRVP 207
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_012195254.1 (hypothetical protein SPRG_19058 [Saprolegnia parasitica CBS 223.65] >KDO34220.1 hypothetical protein SPRG_19058 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 125.2 bits (313), Expect = 3.600e-25 Identity = 91/169 (53.85%), Postives = 118/169 (69.82%), Query Frame = 0
Query: 15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVV 184
TRL V+N+P +VD+ +L+ HF G VTDA +++TK G+SR+ FVG++TE + A +F++TF DT+R+ V+ A PR +N L RPWSKYS+GSSR XXXXXXXXXXXXXXXXXXXXXXXXX + DEF+ TM PRSQTKFW ND+++ V
Sbjct: 3 TRLFVQNLPIYVDDEKLRKHFAANGEVTDACVVKTKDGKSRRFGFVGYKTEAQTVKAQAFFDKTFFDTTRITVKIAQPRESNELDRPWSKYSKGSSRHAEVTKAXXXXXXXXXXXXXXXXXXXXXXXXXGEDS----------AFDEFVETMQPRSQTKFWANDDVMAV 161
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_007211352.2 (multiple RNA-binding domain-containing protein 1 [Prunus persica] >ONI11422.1 hypothetical protein PRUPE_4G106000 [Prunus persica]) HSP 1 Score: 125.2 bits (313), Expect = 3.600e-25 Identity = 72/214 (33.64%), Postives = 115/214 (53.74%), Query Frame = 0
Query: 15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNPAGEEELSD 229
+R+CVKN+PKHV+E RL+ F ++G +TDAKL+RTK G+SR+ AF+GFRTE+E+ A++Y+N++FLDT R+ E A G +PRPWS++S+ G + EFL M PR+++K W ND L+ V ++++++E+ ++V KG ++S N A ++ +SD
Sbjct: 2 SRICVKNLPKHVNESRLREFFSEKGEITDAKLMRTKEGKSRQFAFIGFRTESESEEAMKYYNRSFLDTCRITCEIARKVGDPEIPRPWSRHSQKKETKG------------GEDGKKNKKEKEGVVAKSRSLEPSVKDESGDLQLHEFLEVMQPRAKSKLWANDTLVTPVAEKVGKAKKESEEKSVPVFMEVDKGV--KKSDLHNVAKDDAVSD 201
BLAST of NO01G01680 vs. NCBI_GenBank
Match: ORE20859.1 (RNA-binding domain-containing protein [Rhizopus microsporus]) HSP 1 Score: 125.2 bits (313), Expect = 3.600e-25 Identity = 72/176 (40.91%), Postives = 99/176 (56.25%), Query Frame = 0
Query: 15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKD----EFLATMMPRSQTKFWGNDELLVVPEA 187
+RL VKN+PK + E + + HF ++G VTDAKL++TK+G SR+ F+G++TE A+AA++YFN TF++TSR+VVE A+ + LPRPWSKY+ GSS X XXXX D E+L MMPRS+ K WGND++ EA
Sbjct: 16 SRLIVKNLPKELSEEKFREHFAKKGEVTDAKLMKTKQGTSRRFGFIGYKTEAAAQAAIDYFNNTFINTSRIVVEKAIAYRSEELPRPWSKYTPGSSAHEKREEDRKQKXSKNNDFEVEETDAFRAKQXXXXKTEELINQLNADKNDPKLKEYLEVMMPRSKGKTWGNDDVAPSAEA 191 The following BLAST results are available for this feature:
BLAST of NO01G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01680 ID=NO01G01680|Name=NO01G01680|organism=Nannochloropsis oceanica|type=gene|length=930bpback to top protein sequence of NO01G01680.1 >NO01G01680.1-protein ID=NO01G01680.1-protein|Name=NO01G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bpback to top Synonyms
Publications
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