NO01G01680, NO01G01680 (gene) Nannochloropsis oceanica

Overview
NameNO01G01680
Unique NameNO01G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr1:426409..427338 +

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Properties
Property NameValue
DescriptionRna binding motif protein 19
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:426409..427338 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO01G01680 vs. NCBI_GenBank
Match: EWM29054.1 (rna binding motif protein 19 [Nannochloropsis gaditana])

HSP 1 Score: 205.7 bits (522), Expect = 2.100e-49
Identity = 160/328 (48.78%), Postives = 179/328 (54.57%), Query Frame = 0
Query:    1 MAPDPPAAAPDAGFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRF---------------------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNPAGEEELSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLTLPTPI--------------AGISDLDYLRSKVKKGLEQEMG 288
            MAPDPPA+  +AGFTRLCVKNVPKHVDERRLK HFGQ G VTDAKLLRTK GESRKMAF+GF+TE+EAR AL +FN+TFLDTSRLVVEAAMPRGA+ LPRPWS+YS+GSS F                                                                       VSKDEFLATMMPRSQTKFWGND++ +  E       QK    + +             S  R P+G E          XXXXXXXXXXXXXXXXXXXXXX                        G+SDL YLRSKVKKGL+ E+G
Sbjct:    1 MAPDPPAS--NAGFTRLCVKNVPKHVDERRLKEHFGQHGTVTDAKLLRTKTGESRKMAFLGFKTESEARTALAFFNKTFLDTSRLVVEAAMPRGASELPRPWSRYSKGSSHFEKKGAGGKSSSDSDQASKRKYSTVHGEDAGGTAKRLREQSEEAHLVADLGGQEKVGGTKEEDNAKTKKQRRVSKDEFLATMMPRSQTKFWGNDDVGLTSEG------QKLDRGERRXXXXXXXXXXXXXSEHRRPSGGERRGRGVATDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDVGLSDLGYLRSKVKKGLDGEIG 320          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: CBN74300.1 (RNA binding protein [Ectocarpus siliculosus])

HSP 1 Score: 141.4 bits (355), Expect = 4.900e-30
Identity = 108/172 (62.79%), Postives = 132/172 (76.74%), Query Frame = 0
Query:   11 DAGFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLV 183
            +A  TRL VKNVPKHVDE+RL  HF ++G V+DAK++RTK G+SR+ AFVGF TE++A  AL+Y+NQTFLDTSR+ VE A P+G   + RPWSK+SEGSSR             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  K+EF+A +  RS+ +FW ND+ L+
Sbjct:   11 EAPKTRLIVKNVPKHVDEKRLWQHFAERGEVSDAKIVRTKDGKSRQFAFVGFTTESDAEEALKYYNQTFLDTSRIQVERAQPKGNAGIARPWSKHSEGSSR-------AQKLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEEFMAALKKRSEARFWDNDDALL 175          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: PTQ42378.1 (hypothetical protein MARPO_0030s0107 [Marchantia polymorpha])

HSP 1 Score: 136.7 bits (343), Expect = 1.200e-28
Identity = 72/164 (43.90%), Postives = 91/164 (55.49%), Query Frame = 0
Query:   15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGND 179
            TR+CVKN+P+HV+E RL+ HF + G VTDA+++RT  G SR+  FVG+RTE EA  A++YFN++F DTSRLV E A   GA+ LPRPWS++SEGSS F                                            V   EFL  M PRS+TK W ND
Sbjct:    3 TRICVKNIPRHVNEDRLREHFAENGEVTDARIIRTSDGRSRQFGFVGYRTEEEAVNAVKYFNRSFFDTSRLVCELAQAVGASNLPRPWSRHSEGSSAF-------DNSHRKKDVESFEVKDVAPRAKKTQTPKTGIQEEENDVQLQEFLQVMQPRSKTKIWAND 159          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: PTQ42379.1 (hypothetical protein MARPO_0030s0107 [Marchantia polymorpha])

HSP 1 Score: 136.7 bits (343), Expect = 1.200e-28
Identity = 72/164 (43.90%), Postives = 91/164 (55.49%), Query Frame = 0
Query:   15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGND 179
            TR+CVKN+P+HV+E RL+ HF + G VTDA+++RT  G SR+  FVG+RTE EA  A++YFN++F DTSRLV E A   GA+ LPRPWS++SEGSS F                                            V   EFL  M PRS+TK W ND
Sbjct:   11 TRICVKNIPRHVNEDRLREHFAENGEVTDARIIRTSDGRSRQFGFVGYRTEEEAVNAVKYFNRSFFDTSRLVCELAQAVGASNLPRPWSRHSEGSSAF-------DNSHRKKDVESFEVKDVAPRAKKTQTPKTGIQEEENDVQLQEFLQVMQPRSKTKIWAND 167          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_008865717.1 (hypothetical protein H310_03574 [Aphanomyces invadans] >ETW05940.1 hypothetical protein H310_03574 [Aphanomyces invadans])

HSP 1 Score: 125.9 bits (315), Expect = 2.100e-25
Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 0
Query:   15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELL 182
            TRL V+N+P +VD+ +L+ HFG  G VTDA +++TK G+SR+  FVGF+TE +  AA ++F+++F+DT+R+ V+ A PR +  L RPWSKYS+GSSR+                                               DEF+ TM PRS+TKFW ND+++
Sbjct:    3 TRLFVQNLPLYVDDEKLRKHFGAHGEVTDACVVKTKEGKSRRFGFVGFKTEAQTTAAQKFFDKSFIDTTRINVKVAQPRESEELDRPWSKYSKGSSRYKEKDVVAVDEDTSKVDLNSAKVTKDKTPKETGGF-------------DEFVETMQPRSKTKFWANDDVV 156          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_010693240.1 (PREDICTED: multiple RNA-binding domain-containing protein 1 [Beta vulgaris subsp. vulgaris] >KMS99233.1 hypothetical protein BVRB_2g046710 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 125.9 bits (315), Expect = 2.100e-25
Identity = 77/211 (36.49%), Postives = 112/211 (53.08%), Query Frame = 0
Query:   15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNPAGEEE 226
            +R+CVKNVPK+V+E RL+  F Q+G VTDAKL+RT+ G++R+ AF+G+RTE EA  A++YFN +++DTSR+  E A   GA  +PRPWS+Y++                                                     EFL  M PRS++K W ND  LVVP    +  + K + RQ +Q LK +   NG+++S+R     +E
Sbjct:    3 SRICVKNVPKYVNEDRLREFFSQKGEVTDAKLMRTREGKNRQFAFIGYRTEKEAGEAIKYFNNSYMDTSRITCEVAWKVGAVDIPRPWSQYTKEKQETSEKSDKVSSGKAKPDKRSSSMSNENDDP-----------------KLQEFLQVMQPRSKSKLWAND--LVVPTLG-QSGQDKEEHRQVKQALKKL---NGDKTSERKVEMHDE 190          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_024381120.1 (multiple RNA-binding domain-containing protein 1-like [Physcomitrella patens] >PNR50980.1 hypothetical protein PHYPA_010166 [Physcomitrella patens])

HSP 1 Score: 125.6 bits (314), Expect = 2.800e-25
Identity = 73/208 (35.10%), Postives = 105/208 (50.48%), Query Frame = 0
Query:   13 GFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNP 221
            G +R+CVKN+P+HV E RL+ HF  +G VTDAK++RT+ G +R+  FVG+RTE EA+ A +YF+++F DTSRL  E A   G   LPRPWS++SEGSS+F                                                EFL  M PRS++K W ND  +    +       K ++   +++   ++ K  E  S+R P
Sbjct:    5 GSSRICVKNLPRHVTEERLREHFAAKGEVTDAKIIRTRDGRTRQFGFVGYRTEEEAKDAAKYFHRSFFDTSRLTCELAQAVGDPNLPRPWSRHSEGSSKF-----KPKSDDVVENPTTSAKDTGKFKKNQDFRSKTADSELENDPQLQEFLEVMQPRSKSKLWANDTKIASNGSDSASKHGKQKQGSKKEKKASVEMKTVETFSRRVP 207          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_012195254.1 (hypothetical protein SPRG_19058 [Saprolegnia parasitica CBS 223.65] >KDO34220.1 hypothetical protein SPRG_19058 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.2 bits (313), Expect = 3.600e-25
Identity = 91/169 (53.85%), Postives = 118/169 (69.82%), Query Frame = 0
Query:   15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVV 184
            TRL V+N+P +VD+ +L+ HF   G VTDA +++TK G+SR+  FVG++TE +   A  +F++TF DT+R+ V+ A PR +N L RPWSKYS+GSSR       XXXXXXXXXXXXXXXXXXXXXXXXX              + DEF+ TM PRSQTKFW ND+++ V
Sbjct:    3 TRLFVQNLPIYVDDEKLRKHFAANGEVTDACVVKTKDGKSRRFGFVGYKTEAQTVKAQAFFDKTFFDTTRITVKIAQPRESNELDRPWSKYSKGSSRHAEVTKAXXXXXXXXXXXXXXXXXXXXXXXXXGEDS----------AFDEFVETMQPRSQTKFWANDDVMAV 161          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: XP_007211352.2 (multiple RNA-binding domain-containing protein 1 [Prunus persica] >ONI11422.1 hypothetical protein PRUPE_4G106000 [Prunus persica])

HSP 1 Score: 125.2 bits (313), Expect = 3.600e-25
Identity = 72/214 (33.64%), Postives = 115/214 (53.74%), Query Frame = 0
Query:   15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNPAGEEELSD 229
            +R+CVKN+PKHV+E RL+  F ++G +TDAKL+RTK G+SR+ AF+GFRTE+E+  A++Y+N++FLDT R+  E A   G   +PRPWS++S+     G                                           +   EFL  M PR+++K W ND L+      V  ++++++E+     ++V KG   ++S   N A ++ +SD
Sbjct:    2 SRICVKNLPKHVNESRLREFFSEKGEITDAKLMRTKEGKSRQFAFIGFRTESESEEAMKYYNRSFLDTCRITCEIARKVGDPEIPRPWSRHSQKKETKG------------GEDGKKNKKEKEGVVAKSRSLEPSVKDESGDLQLHEFLEVMQPRAKSKLWANDTLVTPVAEKVGKAKKESEEKSVPVFMEVDKGV--KKSDLHNVAKDDAVSD 201          
BLAST of NO01G01680 vs. NCBI_GenBank
Match: ORE20859.1 (RNA-binding domain-containing protein [Rhizopus microsporus])

HSP 1 Score: 125.2 bits (313), Expect = 3.600e-25
Identity = 72/176 (40.91%), Postives = 99/176 (56.25%), Query Frame = 0
Query:   15 TRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKD----EFLATMMPRSQTKFWGNDELLVVPEA 187
            +RL VKN+PK + E + + HF ++G VTDAKL++TK+G SR+  F+G++TE  A+AA++YFN TF++TSR+VVE A+   +  LPRPWSKY+ GSS            X                  XXXX              D    E+L  MMPRS+ K WGND++    EA
Sbjct:   16 SRLIVKNLPKELSEEKFREHFAKKGEVTDAKLMKTKQGTSRRFGFIGYKTEAAAQAAIDYFNNTFINTSRIVVEKAIAYRSEELPRPWSKYTPGSSAHEKREEDRKQKXSKNNDFEVEETDAFRAKQXXXXKTEELINQLNADKNDPKLKEYLEVMMPRSKGKTWGNDDVAPSAEA 191          
The following BLAST results are available for this feature:
BLAST of NO01G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29054.12.100e-4948.78rna binding motif protein 19 [Nannochloropsis gadi... [more]
CBN74300.14.900e-3062.79RNA binding protein [Ectocarpus siliculosus][more]
PTQ42378.11.200e-2843.90hypothetical protein MARPO_0030s0107 [Marchantia p... [more]
PTQ42379.11.200e-2843.90hypothetical protein MARPO_0030s0107 [Marchantia p... [more]
XP_008865717.12.100e-2538.92hypothetical protein H310_03574 [Aphanomyces invad... [more]
XP_010693240.12.100e-2536.49PREDICTED: multiple RNA-binding domain-containing ... [more]
XP_024381120.12.800e-2535.10multiple RNA-binding domain-containing protein 1-l... [more]
XP_012195254.13.600e-2553.85hypothetical protein SPRG_19058 [Saprolegnia paras... [more]
XP_007211352.23.600e-2533.64multiple RNA-binding domain-containing protein 1 [... [more]
ORE20859.13.600e-2540.91RNA-binding domain-containing protein [Rhizopus mi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008186NSK008186Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01680.1NO01G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231122gene_146Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g54gene1522Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01680.1NO01G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01680 ID=NO01G01680|Name=NO01G01680|organism=Nannochloropsis oceanica|type=gene|length=930bp
ATGGCGCCCGACCCCCCGGCAGCAGCACCCGACGCAGGATTCACGCGGTT
ATGTGTCAAAAATGTACCGAAGCATGTAGACGAGCGCCGGCTCAAGGTGC
ACTTTGGGCAGCAAGGCATGGTGACGGATGCCAAACTGCTGCGGACCAAG
AGAGGGGAGTCGCGCAAGATGGCCTTCGTGGGCTTCCGGACTGAGACCGA
GGCGCGTGCAGCGCTGGAATATTTCAATCAGACTTTTCTGGACACGTCAA
GATTAGTGGTGGAGGCGGCCATGCCGCGAGGGGCTAATACTTTGCCGAGG
CCCTGGAGCAAGTACTCAGAGGGTAGTTCCCGCTTTGGCAACAATGGCAG
CGGTAGCAGCAGCAGCAGCAGTAGCAAGCGACGAATGGCTGACGAGGCAG
AGATTGGGGAAGAAGATGATGAAGACAATGTCACAGTGGTGGCAGCCAAG
GTGAAGAAGCAGCGGCGCGTGAGCAAGGATGAGTTTTTGGCTACAATGAT
GCCCCGCTCTCAGACCAAGTTTTGGGGAAATGACGAGTTGCTCGTCGTAC
CGGAGGCGCATGTCAAGATGAGCGAGCAGAAGAATCAGGAGAGACAAGGG
CAACAACGGCTAAAAGTCATGAAGGGAAAGAATGGGGAGAGGTCAAGCAA
GCGCAATCCTGCAGGAGAAGAGGAGCTGTCCGATGACGGGCATCAGAGTG
AGGAGGATAGGGAGGAGGAGAGTGAGGAAGAGGAGGATGGAGAGGAGGAA
GTTGACAACGAGGAATATGCACCGTTGACACTGCCGACGCCTATCGCAGG
AATTTCGGATCTAGACTATCTGCGTTCTAAAGTGAAAAAGGGGCTGGAGC
AAGAGATGGGGGGGGCACCAGTACTGGCAGTAGAAGTAGTAGTGGCGAGA
CAACGAAGAAGAAGGAAGAAGAGGATGTAG
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protein sequence of NO01G01680.1

>NO01G01680.1-protein ID=NO01G01680.1-protein|Name=NO01G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MAPDPPAAAPDAGFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTK
RGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPR
PWSKYSEGSSRFGNNGSGSSSSSSSKRRMADEAEIGEEDDEDNVTVVAAK
VKKQRRVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQG
QQRLKVMKGKNGERSSKRNPAGEEELSDDGHQSEEDREEESEEEEDGEEE
VDNEEYAPLTLPTPIAGISDLDYLRSKVKKGLEQEMGGAPVLAVEVVVAR
QRRRRKKRM*
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Synonyms
Publications