NO01G01680.1, NO01G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01680.1
Unique NameNO01G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr1:426409..427338 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:426409..427338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01680.1 vs.
Match: EWM29054.1 (rna binding motif protein 19 [Nannochloropsis gaditana])

HSP 1 Score: 265.0 bits (676), Expect = 2.900e-67
Identity = 182/357 (50.98%), Postives = 224/357 (62.75%), Query Frame = 0 
Query:    1 MAPDPPAAAPDAGFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTKRGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPRPWSKYSEGSSRFGNNGSGSSSSSSSK-------------------RRMADEAE-------------IGEEDDEDNVTVVAAKVKKQRRVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQGQQRLKVMKGKNGERSSKRNPAGEEE-----LSDDG----------HQSEEDREEESEEEEDG--EEEVDNEEYAPLTLPTPIAGISDLDYLRSKVKKGLEQEMG---GAPVLAVEVVVARQRRRR 306
            MAPDPPA+  +AGFTRLCVKNVPKHVDERRLK HFGQ G VTDAKLLRTK GESRKMAF+GF+TE+EAR AL +FN+TFLDTSRLVVEAAMPRGA+ LPRPWS+YS+GSS F   G+G  SSS S                    +R+ +++E             +G   +EDN     AK KKQRRVSKDEFLATMMPRSQTKFWGND++ +  E       QK    + ++ L+   G+  E S  R P+G E       +DDG           + EE+ EEE EEEE+G  E+E D +++A  +      G+SDL YLRSKVKKGL+ E+G   G P L  + +   + R R
Sbjct:    1 MAPDPPAS--NAGFTRLCVKNVPKHVDERRLKEHFGQHGTVTDAKLLRTKTGESRKMAFLGFKTESEARTALAFFNKTFLDTSRLVVEAAMPRGASELPRPWSRYSKGSSHFEKKGAGGKSSSDSDQASKRKYSTVHGEDAGGTAKRLREQSEEAHLVADLGGQEKVGGTKEEDN-----AKTKKQRRVSKDEFLATMMPRSQTKFWGNDDVGLTSEG------QKLDRGERREGLRWKPGEGREGSEHRRPSGGERRGRGVATDDGEGESEEENGEEEEEEEEEEEEEEEEEGGEEDEKDKKKFASSSCD---VGLSDLGYLRSKVKKGLDGEIGDHRGGPGLEGQRLGGDEERDR 341
The following BLAST results are available for this feature:
BLAST of NO01G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29054.12.900e-6750.98rna binding motif protein 19 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01680NO01G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01680.1NO01G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01680.1.cds1NO01G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01680.1 ID=NO01G01680.1|Name=NO01G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
ATGGCGCCCGACCCCCCGGCAGCAGCACCCGACGCAGGATTCACGCGGTT
ATGTGTCAAAAATGTACCGAAGCATGTAGACGAGCGCCGGCTCAAGGTGC
ACTTTGGGCAGCAAGGCATGGTGACGGATGCCAAACTGCTGCGGACCAAG
AGAGGGGAGTCGCGCAAGATGGCCTTCGTGGGCTTCCGGACTGAGACCGA
GGCGCGTGCAGCGCTGGAATATTTCAATCAGACTTTTCTGGACACGTCAA
GATTAGTGGTGGAGGCGGCCATGCCGCGAGGGGCTAATACTTTGCCGAGG
CCCTGGAGCAAGTACTCAGAGGGTAGTTCCCGCTTTGGCAACAATGGCAG
CGGTAGCAGCAGCAGCAGCAGTAGCAAGCGACGAATGGCTGACGAGGCAG
AGATTGGGGAAGAAGATGATGAAGACAATGTCACAGTGGTGGCAGCCAAG
GTGAAGAAGCAGCGGCGCGTGAGCAAGGATGAGTTTTTGGCTACAATGAT
GCCCCGCTCTCAGACCAAGTTTTGGGGAAATGACGAGTTGCTCGTCGTAC
CGGAGGCGCATGTCAAGATGAGCGAGCAGAAGAATCAGGAGAGACAAGGG
CAACAACGGCTAAAAGTCATGAAGGGAAAGAATGGGGAGAGGTCAAGCAA
GCGCAATCCTGCAGGAGAAGAGGAGCTGTCCGATGACGGGCATCAGAGTG
AGGAGGATAGGGAGGAGGAGAGTGAGGAAGAGGAGGATGGAGAGGAGGAA
GTTGACAACGAGGAATATGCACCGTTGACACTGCCGACGCCTATCGCAGG
AATTTCGGATCTAGACTATCTGCGTTCTAAAGTGAAAAAGGGGCTGGAGC
AAGAGATGGGGGGGGCACCAGTACTGGCAGTAGAAGTAGTAGTGGCGAGA
CAACGAAGAAGAAGGAAGAAGAGGATGTAG
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protein sequence of NO01G01680.1

>NO01G01680.1-protein ID=NO01G01680.1-protein|Name=NO01G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MAPDPPAAAPDAGFTRLCVKNVPKHVDERRLKVHFGQQGMVTDAKLLRTK
RGESRKMAFVGFRTETEARAALEYFNQTFLDTSRLVVEAAMPRGANTLPR
PWSKYSEGSSRFGNNGSGSSSSSSSKRRMADEAEIGEEDDEDNVTVVAAK
VKKQRRVSKDEFLATMMPRSQTKFWGNDELLVVPEAHVKMSEQKNQERQG
QQRLKVMKGKNGERSSKRNPAGEEELSDDGHQSEEDREEESEEEEDGEEE
VDNEEYAPLTLPTPIAGISDLDYLRSKVKKGLEQEMGGAPVLAVEVVVAR
QRRRRKKRM*
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mRNA from alignment at chr1:426409..427338+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01680.1 ID=NO01G01680.1|Name=NO01G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp|location=Sequence derived from alignment at chr1:426409..427338+ (Nannochloropsis oceanica)
ATGGCGCCCGACCCCCCGGCAGCAGCACCCGACGCAGGATTCACGCGGTT
ATGTGTCAAAAATGTACCGAAGCATGTAGACGAGCGCCGGCTCAAGGTGC
ACTTTGGGCAGCAAGGCATGGTGACGGATGCCAAACTGCTGCGGACCAAG
AGAGGGGAGTCGCGCAAGATGGCCTTCGTGGGCTTCCGGACTGAGACCGA
GGCGCGTGCAGCGCTGGAATATTTCAATCAGACTTTTCTGGACACGTCAA
GATTAGTGGTGGAGGCGGCCATGCCGCGAGGGGCTAATACTTTGCCGAGG
CCCTGGAGCAAGTACTCAGAGGGTAGTTCCCGCTTTGGCAACAATGGCAG
CGGTAGCAGCAGCAGCAGCAGTAGCAAGCGACGAATGGCTGACGAGGCAG
AGATTGGGGAAGAAGATGATGAAGACAATGTCACAGTGGTGGCAGCCAAG
GTGAAGAAGCAGCGGCGCGTGAGCAAGGATGAGTTTTTGGCTACAATGAT
GCCCCGCTCTCAGACCAAGTTTTGGGGAAATGACGAGTTGCTCGTCGTAC
CGGAGGCGCATGTCAAGATGAGCGAGCAGAAGAATCAGGAGAGACAAGGG
CAACAACGGCTAAAAGTCATGAAGGGAAAGAATGGGGAGAGGTCAAGCAA
GCGCAATCCTGCAGGAGAAGAGGAGCTGTCCGATGACGGGCATCAGAGTG
AGGAGGATAGGGAGGAGGAGAGTGAGGAAGAGGAGGATGGAGAGGAGGAA
GTTGACAACGAGGAATATGCACCGTTGACACTGCCGACGCCTATCGCAGG
AATTTCGGATCTAGACTATCTGCGTTCTAAAGTGAAAAAGGGGCTGGAGC
AAGAGATGGGGGGGGCACCAGTACTGGCAGTAGAAGTAGTAGTGGCGAGA
CAACGAAGAAGAAGGAAGAAGAGGATGTAG
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Coding sequence (CDS) from alignment at chr1:426409..427338+

>NO01G01680.1 ID=NO01G01680.1|Name=NO01G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr1:426409..427338+ (Nannochloropsis oceanica)
ATGGCGCCCGACCCCCCGGCAGCAGCACCCGACGCAGGATTCACGCGGTT
ATGTGTCAAAAATGTACCGAAGCATGTAGACGAGCGCCGGCTCAAGGTGC
ACTTTGGGCAGCAAGGCATGGTGACGGATGCCAAACTGCTGCGGACCAAG
AGAGGGGAGTCGCGCAAGATGGCCTTCGTGGGCTTCCGGACTGAGACCGA
GGCGCGTGCAGCGCTGGAATATTTCAATCAGACTTTTCTGGACACGTCAA
GATTAGTGGTGGAGGCGGCCATGCCGCGAGGGGCTAATACTTTGCCGAGG
CCCTGGAGCAAGTACTCAGAGGGTAGTTCCCGCTTTGGCAACAATGGCAG
CGGTAGCAGCAGCAGCAGCAGTAGCAAGCGACGAATGGCTGACGAGGCAG
AGATTGGGGAAGAAGATGATGAAGACAATGTCACAGTGGTGGCAGCCAAG
GTGAAGAAGCAGCGGCGCGTGAGCAAGGATGAGTTTTTGGCTACAATGAT
GCCCCGCTCTCAGACCAAGTTTTGGGGAAATGACGAGTTGCTCGTCGTAC
CGGAGGCGCATGTCAAGATGAGCGAGCAGAAGAATCAGGAGAGACAAGGG
CAACAACGGCTAAAAGTCATGAAGGGAAAGAATGGGGAGAGGTCAAGCAA
GCGCAATCCTGCAGGAGAAGAGGAGCTGTCCGATGACGGGCATCAGAGTG
AGGAGGATAGGGAGGAGGAGAGTGAGGAAGAGGAGGATGGAGAGGAGGAA
GTTGACAACGAGGAATATGCACCGTTGACACTGCCGACGCCTATCGCAGG
AATTTCGGATCTAGACTATCTGCGTTCTAAAGTGAAAAAGGGGCTGGAGC
AAGAGATGGGGGGGGCACCAGTACTGGCAGTAGAAGTAGTAGTGGCGAGA
CAACGAAGAAGAAGGAAGAAGAGGATGTAG
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Synonyms
Publications