NO01G01570, NO01G01570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01570 vs. NCBI_GenBank
Match: EWM29099.1 (Tetraspanin [Nannochloropsis gaditana]) HSP 1 Score: 379.0 bits (972), Expect = 1.600e-101 Identity = 195/364 (53.57%), Postives = 252/364 (69.23%), Query Frame = 0 Query: 4 LNEHIRGIVATSNTCFTVLGLFLGGLASYLLYATAPSTFTLGSLFKGGWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGLMVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKAVVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGD--SSIPYNDGCCPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVILSTCLLICYNPRDSFEDLLAKTGVVVMHAPN----SRQRRTGRSGRPATQDFEQSPSVSPSSAQFRGRAPSAAGVSVVRASPISNSSVDDGEGWRGGTRYGRSRGTEVRSPMQIV 362 LN++I+ +V+TSNTCF + GL LGGLA+YL YAT+ + TL SL + GWI+WT+LVGLGL+ SC+ C +KRQ+VR GPCGGR+LLS+YQLL++GL+ AF L MRT+ + VPLLL++P A Y+RSEQ +L PYF+R+YFKT+ R + GS+ WF WTRQ+CPLSMD+G+CT+C +DGD +S+PY DGCCPR DLCT GNL+ACPY RCRLG+A FL++RLG +Q Y+ F L L L+V++STC+LICYNPRDSF +LLAKTGVV+MH + RT R +P T EQ V +Q + ASP + S V D EG T YG R RSP +V Sbjct: 52 LNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQ-GWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQ-----------NSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV 403
BLAST of NO01G01570 vs. NCBI_GenBank
Match: CBN74900.1 (hypothetical protein Esi_0056_0099 [Ectocarpus siliculosus]) HSP 1 Score: 127.1 bits (318), Expect = 1.100e-25 Identity = 104/339 (30.68%), Postives = 155/339 (45.72%), Query Frame = 0 Query: 1 MGKLNEHIRGIVATSNTCFTVLGLFLGGLASYLLYA--TAPSTFTLGSLFKGGWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGLMVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSE-QKMLAPYFDRVYFKTKAVVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGDSSIPYN---------DGCCPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVILSTCLLICYNPRDSFEDLLAKTGVVVM--HAPNSRQRRTGRSGRPATQ--DFEQSPSVSPSSAQFRGRAPSAAGVSV 324 MGKLN I+ +V +N LFLGG+ ++ + A L + + T++VG+ + S I CV RQ+ R+ GR++LS+YQL+++ ++V G++ MR V L P E + F+ YF E+ S G W + +CP ++ +C+ + S +P +GCCP ++ C G EACPY CR GI L + + Y F L +V++ TCLLICYNPRDS ED+L KTG ++ H P G G P +Q D E +P G A + AG S+ Sbjct: 1 MGKLNSFIKFVVFNANAL-----LFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVV--GQGVVQMRLYSIEVSLEEAAADLPIQHGEFEGRFREGFNEAYF------EQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPARCSTPETYSAEGCCPDEEFCEAGKEEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQHHKPGE-----GGGGEPDSQVGDLEGAP----------GGAKNPAGASI 311
BLAST of NO01G01570 vs. NCBI_GenBank
Match: EJK78056.1 (hypothetical protein THAOC_00069 [Thalassiosira oceanica]) HSP 1 Score: 102.1 bits (253), Expect = 3.800e-18 Identity = 92/286 (32.17%), Postives = 132/286 (46.15%), Query Frame = 0 Query: 57 LLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGLMVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKAVVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSC-----------TTCNS-DGDSSIPYNDGCCPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVILSTCLLICYNPRDSFEDLLAKTGVVVMHAPNSRQRRTGRSGRPATQDFEQSPSVSPSSAQFRGRAPSAAGVSVVRASPIS 331 LL+ L ++ S C RQ R+G GRK+L ++QLL++ ++V L + +V L P Y+ E++ L+ +FD YFK+ S + W + NCP M +C TTC + GD+ GCCP ++LC G ACPY CRL I L++ +G + +A L+I+ + LLICYNPRDS E L KTGV+ + + +R RS +T S + SS F S A R SPIS Sbjct: 8 LLLSLSVLFCSFYGCNGALRQTKRKGCFAGRKILCLHQLLLIAVLVFAFANLEWTTKLHRSVRSFLRDPSQDYNGFEER-LSVFFDGEYFKSLC-----SSNDSTAGDWLEKFVSANCPQQMKPTACALSGRKRDMCDTTCYALQGDTDRFQELGCCPSKELCQSGFESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVLSIEDLEAVRRLKERSNMSSTVQDTSIGSTADSSWLF----GSVAKRRSHRVSPIS 283 The following BLAST results are available for this feature:
BLAST of NO01G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01570 ID=NO01G01570|Name=NO01G01570|organism=Nannochloropsis oceanica|type=gene|length=1086bpback to top protein sequence of NO01G01570.1 >NO01G01570.1-protein ID=NO01G01570.1-protein|Name=NO01G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bpback to top Synonyms
Publications
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