NO01G01570, NO01G01570 (gene) Nannochloropsis oceanica

Overview
NameNO01G01570
Unique NameNO01G01570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr1:397410..398495 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetraspanin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:397410..398495 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO01G01570 vs. NCBI_GenBank
Match: EWM29099.1 (Tetraspanin [Nannochloropsis gaditana])

HSP 1 Score: 379.0 bits (972), Expect = 1.600e-101
Identity = 195/364 (53.57%), Postives = 252/364 (69.23%), Query Frame = 0
Query:    4 LNEHIRGIVATSNTCFTVLGLFLGGLASYLLYATAPSTFTLGSLFKGGWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGLMVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKAVVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGD--SSIPYNDGCCPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVILSTCLLICYNPRDSFEDLLAKTGVVVMHAPN----SRQRRTGRSGRPATQDFEQSPSVSPSSAQFRGRAPSAAGVSVVRASPISNSSVDDGEGWRGGTRYGRSRGTEVRSPMQIV 362
            LN++I+ +V+TSNTCF + GL LGGLA+YL YAT+ +  TL SL + GWI+WT+LVGLGL+  SC+ C  +KRQ+VR GPCGGR+LLS+YQLL++GL+ AF    L MRT+ + VPLLL++P A Y+RSEQ +L PYF+R+YFKT+    R +    GS+ WF  WTRQ+CPLSMD+G+CT+C +DGD  +S+PY DGCCPR DLCT GNL+ACPY RCRLG+A FL++RLG +Q Y+ F L L L+V++STC+LICYNPRDSF +LLAKTGVV+MH         + RT R  +P T   EQ   V    +Q           +   ASP + S V D EG    T YG  R    RSP  +V
Sbjct:   52 LNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQ-GWIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQ-----------NSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV 403          
BLAST of NO01G01570 vs. NCBI_GenBank
Match: CBN74900.1 (hypothetical protein Esi_0056_0099 [Ectocarpus siliculosus])

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-25
Identity = 104/339 (30.68%), Postives = 155/339 (45.72%), Query Frame = 0
Query:    1 MGKLNEHIRGIVATSNTCFTVLGLFLGGLASYLLYA--TAPSTFTLGSLFKGGWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGLMVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSE-QKMLAPYFDRVYFKTKAVVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGDSSIPYN---------DGCCPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVILSTCLLICYNPRDSFEDLLAKTGVVVM--HAPNSRQRRTGRSGRPATQ--DFEQSPSVSPSSAQFRGRAPSAAGVSV 324
            MGKLN  I+ +V  +N       LFLGG+   ++ +   A     L   +     + T++VG+ +   S I CV   RQ+ R+    GR++LS+YQL+++ ++V    G++ MR     V L       P    E +      F+  YF      E+  S   G   W  +    +CP ++   +C+  +    S +P           +GCCP ++ C  G  EACPY  CR GI   L   +   + Y  F   L  +V++ TCLLICYNPRDS ED+L KTG ++   H P       G  G P +Q  D E +P          G A + AG S+
Sbjct:    1 MGKLNSFIKFVVFNANAL-----LFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVV--GQGVVQMRLYSIEVSLEEAAADLPIQHGEFEGRFREGFNEAYF------EQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPARCSTPETYSAEGCCPDEEFCEAGKEEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQHHKPGE-----GGGGEPDSQVGDLEGAP----------GGAKNPAGASI 311          
BLAST of NO01G01570 vs. NCBI_GenBank
Match: EJK78056.1 (hypothetical protein THAOC_00069 [Thalassiosira oceanica])

HSP 1 Score: 102.1 bits (253), Expect = 3.800e-18
Identity = 92/286 (32.17%), Postives = 132/286 (46.15%), Query Frame = 0
Query:   57 LLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGLMVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKAVVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSC-----------TTCNS-DGDSSIPYNDGCCPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVILSTCLLICYNPRDSFEDLLAKTGVVVMHAPNSRQRRTGRSGRPATQDFEQSPSVSPSSAQFRGRAPSAAGVSVVRASPIS 331
            LL+ L ++  S   C    RQ  R+G   GRK+L ++QLL++ ++V     L     +  +V   L  P   Y+  E++ L+ +FD  YFK+        S    +  W   +   NCP  M   +C           TTC +  GD+      GCCP ++LC  G   ACPY  CRL I   L++ +G  +      +A   L+I+ + LLICYNPRDS E  L KTGV+ +    + +R   RS   +T       S + SS  F     S A     R SPIS
Sbjct:    8 LLLSLSVLFCSFYGCNGALRQTKRKGCFAGRKILCLHQLLLIAVLVFAFANLEWTTKLHRSVRSFLRDPSQDYNGFEER-LSVFFDGEYFKSLC-----SSNDSTAGDWLEKFVSANCPQQMKPTACALSGRKRDMCDTTCYALQGDTDRFQELGCCPSKELCQSGFESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVLSIEDLEAVRRLKERSNMSSTVQDTSIGSTADSSWLF----GSVAKRRSHRVSPIS 283          
The following BLAST results are available for this feature:
BLAST of NO01G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29099.11.600e-10153.57Tetraspanin [Nannochloropsis gaditana][more]
CBN74900.11.100e-2530.68hypothetical protein Esi_0056_0099 [Ectocarpus sil... [more]
EJK78056.13.800e-1832.17hypothetical protein THAOC_00069 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01570.1NO01G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537162gene_133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g39gene1535Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01570.1NO01G01570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01570 ID=NO01G01570|Name=NO01G01570|organism=Nannochloropsis oceanica|type=gene|length=1086bp
ATGGGCAAGCTCAACGAGCATATCCGGGGCATTGTGGCGACAAGCAATAC
TTGTTTTACCGTCTTGGGCTTGTTCTTGGGAGGCTTGGCAAGTTACCTGC
TTTACGCCACGGCACCTTCCACCTTTACCTTGGGGAGCTTGTTCAAAGGG
GGATGGATTGTCTGGACGCTACTGGTAGGCTTAGGCCTGATCCTCTCGTC
CTGCATAAATTGCGTTGCGCTTAAGAGACAGATGGTGCGAGAAGGTCCTT
GCGGTGGCCGAAAGTTATTGTCAATGTACCAACTGCTAGTAATGGGCTTG
ATGGTTGCTTTTGCCGTTGGCTTGCTGACGATGCGCACGATGCAGAGCGC
AGTTCCTCTTCTCTTAGAGCACCCAAAAGCTCCCTATTCGAGGTCCGAGC
AAAAAATGTTAGCTCCATACTTTGACCGCGTCTACTTCAAGACCAAGGCT
GTCGTGGAGAGGGATTACAGCGAGCAAGGTGGAAGTTATAAGTGGTTTCT
GGCTTGGACAAGACAGAACTGCCCTTTATCAATGGACATGGGCTCGTGCA
CCACTTGTAACAGTGATGGTGACTCCAGCATCCCTTACAATGACGGATGC
TGTCCTCGGCAAGATCTGTGTACCGTAGGAAACCTAGAGGCGTGCCCTTA
CATGCGGTGCCGACTAGGCATTGCTACCTTTTTGAATCGCCGTCTGGGGC
GCATGCAAAATTACATGTATTTTTTTCTCGCCCTCCTATTACTTGTCATT
CTCAGCACCTGCCTTCTGATCTGCTACAACCCCCGTGACTCGTTCGAGGA
CCTCCTGGCCAAAACAGGCGTGGTAGTAATGCACGCACCAAACTCACGAC
AACGACGCACAGGTCGCAGTGGGAGGCCTGCTACACAGGATTTTGAGCAG
TCTCCCTCCGTTTCACCCTCGTCTGCGCAATTTAGAGGACGGGCACCGTC
GGCGGCTGGAGTTTCAGTGGTTAGGGCCAGTCCAATATCCAATTCATCTG
TGGATGACGGAGAAGGGTGGCGTGGAGGCACGCGGTACGGTAGAAGTAGG
GGTACTGAGGTGCGGTCCCCCATGCAAATAGTATAA
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protein sequence of NO01G01570.1

>NO01G01570.1-protein ID=NO01G01570.1-protein|Name=NO01G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MGKLNEHIRGIVATSNTCFTVLGLFLGGLASYLLYATAPSTFTLGSLFKG
GWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGL
MVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKA
VVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGDSSIPYNDGC
CPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVI
LSTCLLICYNPRDSFEDLLAKTGVVVMHAPNSRQRRTGRSGRPATQDFEQ
SPSVSPSSAQFRGRAPSAAGVSVVRASPISNSSVDDGEGWRGGTRYGRSR
GTEVRSPMQIV*
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Synonyms
Publications