NO01G01570.1, NO01G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01570.1
Unique NameNO01G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr1:397410..398495 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:397410..398495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01570.1 vs.
Match: EWM29099.1 (Tetraspanin [Nannochloropsis gaditana])

HSP 1 Score: 379.0 bits (972), Expect = 1.600e-101
Identity = 195/364 (53.57%), Postives = 252/364 (69.23%), Query Frame = 0 
Query:    4 LNEHIRGIVATSNTCFTVLGLFLGGLASYLLYATAPSTFTLGSLFKGGWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGLMVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKAVVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGD--SSIPYNDGCCPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVILSTCLLICYNPRDSFEDLLAKTGVVVMHAPN----SRQRRTGRSGRPATQDFEQSPSVSPSSAQFRGRAPSAAGVSVVRASPISNSSVDDGEGWRGGTRYGRSRGTEVRSPMQIV 362
            LN++I+ +V+TSNTCF + GL LGGLA+YL YAT+ +  TL SL +G WI+WT+LVGLGL+  SC+ C  +KRQ+VR GPCGGR+LLS+YQLL++GL+ AF    L MRT+ + VPLLL++P A Y+RSEQ +L PYF+R+YFKT+    R +    GS+ WF  WTRQ+CPLSMD+G+CT+C +DGD  +S+PY DGCCPR DLCT GNL+ACPY RCRLG+A FL++RLG +Q Y+ F L L L+V++STC+LICYNPRDSF +LLAKTGVV+MH         + RT R  +P T   EQ   V    +Q           +   ASP + S V D EG    T YG  R    RSP  +V
Sbjct:   52 LNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQG-WIMWTMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGTSVPYTDGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVIMHERTDFLPKDEHRTSRILKPPTTKKEQPSHVGVKRSQ-----------NSAIASPTTTSPVVDIEGKNNTTMYGGRRCGSRRSPAHMV 403
The following BLAST results are available for this feature:
BLAST of NO01G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29099.11.600e-10153.57Tetraspanin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01570NO01G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01570.1NO01G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01570.1.cds1NO01G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01570.1 ID=NO01G01570.1|Name=NO01G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGGGCAAGCTCAACGAGCATATCCGGGGCATTGTGGCGACAAGCAATAC
TTGTTTTACCGTCTTGGGCTTGTTCTTGGGAGGCTTGGCAAGTTACCTGC
TTTACGCCACGGCACCTTCCACCTTTACCTTGGGGAGCTTGTTCAAAGGG
GGATGGATTGTCTGGACGCTACTGGTAGGCTTAGGCCTGATCCTCTCGTC
CTGCATAAATTGCGTTGCGCTTAAGAGACAGATGGTGCGAGAAGGTCCTT
GCGGTGGCCGAAAGTTATTGTCAATGTACCAACTGCTAGTAATGGGCTTG
ATGGTTGCTTTTGCCGTTGGCTTGCTGACGATGCGCACGATGCAGAGCGC
AGTTCCTCTTCTCTTAGAGCACCCAAAAGCTCCCTATTCGAGGTCCGAGC
AAAAAATGTTAGCTCCATACTTTGACCGCGTCTACTTCAAGACCAAGGCT
GTCGTGGAGAGGGATTACAGCGAGCAAGGTGGAAGTTATAAGTGGTTTCT
GGCTTGGACAAGACAGAACTGCCCTTTATCAATGGACATGGGCTCGTGCA
CCACTTGTAACAGTGATGGTGACTCCAGCATCCCTTACAATGACGGATGC
TGTCCTCGGCAAGATCTGTGTACCGTAGGAAACCTAGAGGCGTGCCCTTA
CATGCGGTGCCGACTAGGCATTGCTACCTTTTTGAATCGCCGTCTGGGGC
GCATGCAAAATTACATGTATTTTTTTCTCGCCCTCCTATTACTTGTCATT
CTCAGCACCTGCCTTCTGATCTGCTACAACCCCCGTGACTCGTTCGAGGA
CCTCCTGGCCAAAACAGGCGTGGTAGTAATGCACGCACCAAACTCACGAC
AACGACGCACAGGTCGCAGTGGGAGGCCTGCTACACAGGATTTTGAGCAG
TCTCCCTCCGTTTCACCCTCGTCTGCGCAATTTAGAGGACGGGCACCGTC
GGCGGCTGGAGTTTCAGTGGTTAGGGCCAGTCCAATATCCAATTCATCTG
TGGATGACGGAGAAGGGTGGCGTGGAGGCACGCGGTACGGTAGAAGTAGG
GGTACTGAGGTGCGGTCCCCCATGCAAATAGTATAA
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protein sequence of NO01G01570.1

>NO01G01570.1-protein ID=NO01G01570.1-protein|Name=NO01G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MGKLNEHIRGIVATSNTCFTVLGLFLGGLASYLLYATAPSTFTLGSLFKG
GWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGL
MVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKA
VVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGDSSIPYNDGC
CPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVI
LSTCLLICYNPRDSFEDLLAKTGVVVMHAPNSRQRRTGRSGRPATQDFEQ
SPSVSPSSAQFRGRAPSAAGVSVVRASPISNSSVDDGEGWRGGTRYGRSR
GTEVRSPMQIV*
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mRNA from alignment at chr1:397410..398495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01570.1 ID=NO01G01570.1|Name=NO01G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp|location=Sequence derived from alignment at chr1:397410..398495- (Nannochloropsis oceanica)
ATGGGCAAGCTCAACGAGCATATCCGGGGCATTGTGGCGACAAGCAATAC
TTGTTTTACCGTCTTGGGCTTGTTCTTGGGAGGCTTGGCAAGTTACCTGC
TTTACGCCACGGCACCTTCCACCTTTACCTTGGGGAGCTTGTTCAAAGGG
GGATGGATTGTCTGGACGCTACTGGTAGGCTTAGGCCTGATCCTCTCGTC
CTGCATAAATTGCGTTGCGCTTAAGAGACAGATGGTGCGAGAAGGTCCTT
GCGGTGGCCGAAAGTTATTGTCAATGTACCAACTGCTAGTAATGGGCTTG
ATGGTTGCTTTTGCCGTTGGCTTGCTGACGATGCGCACGATGCAGAGCGC
AGTTCCTCTTCTCTTAGAGCACCCAAAAGCTCCCTATTCGAGGTCCGAGC
AAAAAATGTTAGCTCCATACTTTGACCGCGTCTACTTCAAGACCAAGGCT
GTCGTGGAGAGGGATTACAGCGAGCAAGGTGGAAGTTATAAGTGGTTTCT
GGCTTGGACAAGACAGAACTGCCCTTTATCAATGGACATGGGCTCGTGCA
CCACTTGTAACAGTGATGGTGACTCCAGCATCCCTTACAATGACGGATGC
TGTCCTCGGCAAGATCTGTGTACCGTAGGAAACCTAGAGGCGTGCCCTTA
CATGCGGTGCCGACTAGGCATTGCTACCTTTTTGAATCGCCGTCTGGGGC
GCATGCAAAATTACATGTATTTTTTTCTCGCCCTCCTATTACTTGTCATT
CTCAGCACCTGCCTTCTGATCTGCTACAACCCCCGTGACTCGTTCGAGGA
CCTCCTGGCCAAAACAGGCGTGGTAGTAATGCACGCACCAAACTCACGAC
AACGACGCACAGGTCGCAGTGGGAGGCCTGCTACACAGGATTTTGAGCAG
TCTCCCTCCGTTTCACCCTCGTCTGCGCAATTTAGAGGACGGGCACCGTC
GGCGGCTGGAGTTTCAGTGGTTAGGGCCAGTCCAATATCCAATTCATCTG
TGGATGACGGAGAAGGGTGGCGTGGAGGCACGCGGTACGGTAGAAGTAGG
GGTACTGAGGTGCGGTCCCCCATGCAAATAGTATAA
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Coding sequence (CDS) from alignment at chr1:397410..398495-

>NO01G01570.1 ID=NO01G01570.1|Name=NO01G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr1:397410..398495- (Nannochloropsis oceanica)
ATGGGCAAGCTCAACGAGCATATCCGGGGCATTGTGGCGACAAGCAATAC
TTGTTTTACCGTCTTGGGCTTGTTCTTGGGAGGCTTGGCAAGTTACCTGC
TTTACGCCACGGCACCTTCCACCTTTACCTTGGGGAGCTTGTTCAAAGGG
GGATGGATTGTCTGGACGCTACTGGTAGGCTTAGGCCTGATCCTCTCGTC
CTGCATAAATTGCGTTGCGCTTAAGAGACAGATGGTGCGAGAAGGTCCTT
GCGGTGGCCGAAAGTTATTGTCAATGTACCAACTGCTAGTAATGGGCTTG
ATGGTTGCTTTTGCCGTTGGCTTGCTGACGATGCGCACGATGCAGAGCGC
AGTTCCTCTTCTCTTAGAGCACCCAAAAGCTCCCTATTCGAGGTCCGAGC
AAAAAATGTTAGCTCCATACTTTGACCGCGTCTACTTCAAGACCAAGGCT
GTCGTGGAGAGGGATTACAGCGAGCAAGGTGGAAGTTATAAGTGGTTTCT
GGCTTGGACAAGACAGAACTGCCCTTTATCAATGGACATGGGCTCGTGCA
CCACTTGTAACAGTGATGGTGACTCCAGCATCCCTTACAATGACGGATGC
TGTCCTCGGCAAGATCTGTGTACCGTAGGAAACCTAGAGGCGTGCCCTTA
CATGCGGTGCCGACTAGGCATTGCTACCTTTTTGAATCGCCGTCTGGGGC
GCATGCAAAATTACATGTATTTTTTTCTCGCCCTCCTATTACTTGTCATT
CTCAGCACCTGCCTTCTGATCTGCTACAACCCCCGTGACTCGTTCGAGGA
CCTCCTGGCCAAAACAGGCGTGGTAGTAATGCACGCACCAAACTCACGAC
AACGACGCACAGGTCGCAGTGGGAGGCCTGCTACACAGGATTTTGAGCAG
TCTCCCTCCGTTTCACCCTCGTCTGCGCAATTTAGAGGACGGGCACCGTC
GGCGGCTGGAGTTTCAGTGGTTAGGGCCAGTCCAATATCCAATTCATCTG
TGGATGACGGAGAAGGGTGGCGTGGAGGCACGCGGTACGGTAGAAGTAGG
GGTACTGAGGTGCGGTCCCCCATGCAAATAGTATAA
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Synonyms
Publications