NO01G01130, NO01G01130 (gene) Nannochloropsis oceanica

Overview
NameNO01G01130
Unique NameNO01G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length840
Alignment locationchr1:288072..288911 +

Link to JBrowse

Properties
Property NameValue
DescriptionGtp cyclohydrolase ii
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:288072..288911 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036144RibA-like_sf
IPR032677GTP_cyclohydro_II
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003935GTP cyclohydrolase II activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009231riboflavin biosynthetic process
Homology
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: ETI45085.1 (GTP cyclohydrolase II [Phytophthora parasitica P1569])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDC+EQL  A    K+ GG+
Sbjct:   42 FVAETALPTDGGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCREQLDYAKAYTKQHGGV 123
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_008893341.1 (GTP cyclohydrolase II [Phytophthora parasitica INRA-310] >ETK85060.1 GTP cyclohydrolase II [Phytophthora parasitica] >ETL38482.1 GTP cyclohydrolase II [Phytophthora parasitica] >ETL91602.1 GTP cyclohydrolase II [Phytophthora parasitica] >ETM44896.1 GTP cyclohydrolase II [Phytophthora parasitica] >ETN21560.1 GTP cyclohydrolase II [Phytophthora parasitica INRA-310] >ETO73748.1 GTP cyclohydrolase II [Phytophthora parasitica P1976] >ETP14902.1 GTP cyclohydrolase II [Phytophthora parasitica CJ01A1] >ETP42970.1 GTP cyclohydrolase II [Phytophthora parasitica P10297] >KUF80788.1 GTP cyclohydrolase-2 [Phytophthora nicotianae] >KUF89238.1 hypothetical protein AM588_10003040 [Phytophthora nicotianae] >KUF90813.1 GTP cyclohydrolase-2 [Phytophthora nicotianae])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDC+EQL  A    K+ GG+
Sbjct:   42 FVAETALPTDGGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCREQLDYAKAYTKQHGGV 123
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_002903254.1 (riboflavin biosynthesis protein ribBA [Phytophthora infestans T30-4] >EEY55678.1 riboflavin biosynthesis protein ribBA [Phytophthora infestans T30-4])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDC+EQL  A    K+ GG+
Sbjct:   43 FVAETALPTDGGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCREQLDYAKAYTKQHGGV 124
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: EWM23288.1 (gtp cyclohydrolase [Nannochloropsis gaditana])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 0 
Query:  190 EDSAAEARFVAECEMPTDRGNFRMRSYRC---GGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGG 278
            E  A    F+++CE+PTDRG F +R+YR     G    +EPV L  G   G + V  R+HDQCLTSEV GS+RCDCKEQL MALD I   G
Sbjct:  261 EGPAFVFEFISQCELPTDRGLFHLRAYRYTHKTGRRQVVEPVVLFQGEHRGGKQVWVRVHDQCLTSEVLGSRRCDCKEQLEMALDRIVGNG 351
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: OWZ07505.1 (GTP cyclohydrolase II [Phytophthora megakarya])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDC+EQL  A    K+ GG+
Sbjct:   33 FVAETVLPTDGGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCREQLDFAKAYTKQHGGV 114
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: POM68559.1 (GTP cyclohydrolase II [Phytophthora palmivora var. palmivora])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDC+EQL  A    K+ GG+
Sbjct:   42 FVAETALPTDGGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCREQLDYAKAYTKQHGGV 123
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: POM74069.1 (GTP cyclohydrolase II [Phytophthora palmivora var. palmivora])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDC+EQL  A    K+ GG+
Sbjct:   42 FVAETALPTDGGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCREQLDYAKAYTKQHGGV 123
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_002903205.1 (riboflavin biosynthesis protein ribBA, putative [Phytophthora infestans T30-4] >EEY55629.1 riboflavin biosynthesis protein ribBA, putative [Phytophthora infestans T30-4])

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-16
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDC++QL  A    K+ GG+
Sbjct:  133 FVAETALPTDGGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCRDQLDYAKAYTKQHGGV 214
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: OUS48598.1 (GTP cyclohydrolase II-domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 95.1 bits (235), Expect = 3.600e-16
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0 
Query:  193 AAEARFVAECEMPTDRGNFRMRSYRCG--GIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGG 278
            A    FVAE  +PT+RG +R+R YR       A  EPV + YG + G E+V  R+HD C TSEV GS +CDCK+QL MA+D IKE G
Sbjct:   65 ARATTFVAETRLPTERGFYRVRGYRHANPNTGAVTEPVCVVYGDVEGLEDVPLRVHDACFTSEVLGSMKCDCKQQLEMAMDYIKENG 151
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_007513137.1 (GTP cyclohydrolase II [Bathycoccus prasinos] >CCO16695.1 GTP cyclohydrolase II [Bathycoccus prasinos])

HSP 1 Score: 94.4 bits (233), Expect = 6.200e-16
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:  194 AEARFVAECEMPTDRGNFRMRSYRCGG--IYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKE 276
            ++ +F+AE ++PTD+G +R+R YR  G   +   EP  + YG++ G ENV  R+HD C TSEV GS +CDCK+QL MAL+ I++
Sbjct:   92 SQTQFIAETKLPTDKGFYRLRGYRHRGPKTHVITEPTCMIYGNVEGLENVPVRVHDACFTSEVLGSLKCDCKQQLDMALEYIRD 175
The following BLAST results are available for this feature:
BLAST of NO01G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETI45085.11.200e-1653.66GTP cyclohydrolase II [Phytophthora parasitica P15... [more]
XP_008893341.11.200e-1653.66GTP cyclohydrolase II [Phytophthora parasitica INR... [more]
XP_002903254.11.200e-1653.66riboflavin biosynthesis protein ribBA [Phytophthor... [more]
EWM23288.11.200e-1652.75gtp cyclohydrolase [Nannochloropsis gaditana][more]
OWZ07505.11.200e-1653.66GTP cyclohydrolase II [Phytophthora megakarya][more]
POM68559.11.200e-1653.66GTP cyclohydrolase II [Phytophthora palmivora var.... [more]
POM74069.11.200e-1653.66GTP cyclohydrolase II [Phytophthora palmivora var.... [more]
XP_002903205.12.800e-1652.44riboflavin biosynthesis protein ribBA, putative [P... [more]
OUS48598.13.600e-1651.72GTP cyclohydrolase II-domain-containing protein [O... [more]
XP_007513137.16.200e-1647.62GTP cyclohydrolase II [Bathycoccus prasinos] >CCO1... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008256NSK008256Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01130.1NO01G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668197gene_90Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100071g6gene1574Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01130.1NO01G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01130 ID=NO01G01130|Name=NO01G01130|organism=Nannochloropsis oceanica|type=gene|length=840bp
ATGAGACTTTCGACATCACATGCACCACCATTAGGCGCCTGCACCACTGA
CGGGCAAAAAGTAGGACGGCGGAGAAGAAGGACTGGCACCAGTACCAGCA
GCGCGCCTGCCTCCTCATGTAGTGTCGGCCTGATGGCCGCCGCCGCCACC
ACTCTTCTCTTTCTCCTCCTCCCCCTCGTACAAGTCGCGCAGGCATTTGT
CTTGACCCCATCAGGTGCGGACCGGAGATTTATTGGCGGAGAGCGGAAGC
GGGTAGAGGATTGCCGAAGACGGCCCCCGTCCTTCTTAGGGGCAGGAGAG
GGCGTGGTGGGTGCCCTCGGGAGTGCTTTGGCGGACCGGCAGCAGGCCAG
CAGTAGTAGCTGTTATAGCGATTGTAGTAACAATCCTCTCTCCCCCTCCT
CCTCCTCATCCTCTTCCTCCTCCTCCACCACTTCCTCTTCTTCTACCTCC
TCCCCCACCCCCTCCTCCGCCTTCTCCTCCTCCTCCCAAGCCCTCCCAGC
AATAGTTGCCTCCCCCTCCACCACAACATCGTCTTCCTCCCCCACTGTCG
CCCTCAACCAGTATGGGGAAGACTCTGCAGCCGAAGCCCGGTTCGTGGCG
GAATGTGAGATGCCCACCGACCGTGGTAATTTCCGCATGCGCTCTTATCG
TTGCGGAGGGATATATGCCGCTCTGGAGCCTGTGGCATTGACGTACGGGT
CATTATCGGGAAAGGAAAATGTGCTGGCGCGGATCCATGATCAGTGCCTG
ACGTCAGAAGTGTTTGGGAGTAAGCGGTGCGATTGCAAGGAACAGTTGGG
CATGGCCTTGGACATGATCAAGGAGGGGGGGGGGTTGTGA
back to top

protein sequence of NO01G01130.1

>NO01G01130.1-protein ID=NO01G01130.1-protein|Name=NO01G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MRLSTSHAPPLGACTTDGQKVGRRRRRTGTSTSSAPASSCSVGLMAAAAT
TLLFLLLPLVQVAQAFVLTPSGADRRFIGGERKRVEDCRRRPPSFLGAGE
GVVGALGSALADRQQASSSSCYSDCSNNPLSPSSSSSSSSSSTTSSSSTS
SPTPSSAFSSSSQALPAIVASPSTTTSSSSPTVALNQYGEDSAAEARFVA
ECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCL
TSEVFGSKRCDCKEQLGMALDMIKEGGGL*
back to top
Synonyms
Publications