NO01G01130.1, NO01G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01130.1
Unique NameNO01G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length840
Alignment locationchr1:288072..288911 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:288072..288911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01130.1 vs.
Match: EWM29043.1 (gtp cyclohydrolase ii [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 1.300e-53
Identity = 143/257 (55.64%), Postives = 170/257 (66.15%), Query Frame = 0 
Query:   23 RRRRRTGTSTSSAPASSCSVGLMAAAATTLLFLLLPLVQVAQAFVLTPSGADRRFIGGERKRVEDCRRRPPSFLGAGEGVVGALGSALADRQQASSSSCYSDCSNNPLSPSSSSSSSSSSTTSSSSTSSPTPSSAFSSSSQALPAIVASPSTTTSSSSPTVALNQYGEDSAAEARFVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            RRRRR        P    ++ L+ +    +LFLLL      QAFVL P G DRR +GG RKR+EDCRRRPPSF+G  EG+  ALGSALADRQQASS+S     + N +S S+S+++S+ S ++    S P               +V +   +TS   P       G    AEARFVAEC+MPTDRGNFRMRSYRC G YAALEPVALT+G L G ENVLAR+HDQCLTSEVFGSKRCDCKEQLGMALDMI+E GG+
Sbjct:   29 RRRRRVCVHAPFRPGCCRTLPLLIS----VLFLLLLFAHCTQAFVLAPPGVDRRIVGG-RKRLEDCRRRPPSFVGTREGIC-ALGSALADRQQASSNS-----NGNSISFSNSNNNSNFSASTPGRPSVP---------------LVPTRLVSTSFQPPIQQDIAPGSPGVAEARFVAECDMPTDRGNFRMRSYRCDGDYAALEPVALTHGPLGGAENVLARVHDQCLTSEVFGSKRCDCKEQLGMALDMIREEGGV 259
The following BLAST results are available for this feature:
BLAST of NO01G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29043.11.300e-5355.64gtp cyclohydrolase ii [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01130NO01G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01130.1NO01G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01130.1.cds1NO01G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01130.1 ID=NO01G01130.1|Name=NO01G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
ATGAGACTTTCGACATCACATGCACCACCATTAGGCGCCTGCACCACTGA
CGGGCAAAAAGTAGGACGGCGGAGAAGAAGGACTGGCACCAGTACCAGCA
GCGCGCCTGCCTCCTCATGTAGTGTCGGCCTGATGGCCGCCGCCGCCACC
ACTCTTCTCTTTCTCCTCCTCCCCCTCGTACAAGTCGCGCAGGCATTTGT
CTTGACCCCATCAGGTGCGGACCGGAGATTTATTGGCGGAGAGCGGAAGC
GGGTAGAGGATTGCCGAAGACGGCCCCCGTCCTTCTTAGGGGCAGGAGAG
GGCGTGGTGGGTGCCCTCGGGAGTGCTTTGGCGGACCGGCAGCAGGCCAG
CAGTAGTAGCTGTTATAGCGATTGTAGTAACAATCCTCTCTCCCCCTCCT
CCTCCTCATCCTCTTCCTCCTCCTCCACCACTTCCTCTTCTTCTACCTCC
TCCCCCACCCCCTCCTCCGCCTTCTCCTCCTCCTCCCAAGCCCTCCCAGC
AATAGTTGCCTCCCCCTCCACCACAACATCGTCTTCCTCCCCCACTGTCG
CCCTCAACCAGTATGGGGAAGACTCTGCAGCCGAAGCCCGGTTCGTGGCG
GAATGTGAGATGCCCACCGACCGTGGTAATTTCCGCATGCGCTCTTATCG
TTGCGGAGGGATATATGCCGCTCTGGAGCCTGTGGCATTGACGTACGGGT
CATTATCGGGAAAGGAAAATGTGCTGGCGCGGATCCATGATCAGTGCCTG
ACGTCAGAAGTGTTTGGGAGTAAGCGGTGCGATTGCAAGGAACAGTTGGG
CATGGCCTTGGACATGATCAAGGAGGGGGGGGGGTTGTGA
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protein sequence of NO01G01130.1

>NO01G01130.1-protein ID=NO01G01130.1-protein|Name=NO01G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MRLSTSHAPPLGACTTDGQKVGRRRRRTGTSTSSAPASSCSVGLMAAAAT
TLLFLLLPLVQVAQAFVLTPSGADRRFIGGERKRVEDCRRRPPSFLGAGE
GVVGALGSALADRQQASSSSCYSDCSNNPLSPSSSSSSSSSSTTSSSSTS
SPTPSSAFSSSSQALPAIVASPSTTTSSSSPTVALNQYGEDSAAEARFVA
ECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCL
TSEVFGSKRCDCKEQLGMALDMIKEGGGL*
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mRNA from alignment at chr1:288072..288911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01130.1 ID=NO01G01130.1|Name=NO01G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=840bp|location=Sequence derived from alignment at chr1:288072..288911+ (Nannochloropsis oceanica)
ATGAGACTTTCGACATCACATGCACCACCATTAGGCGCCTGCACCACTGA
CGGGCAAAAAGTAGGACGGCGGAGAAGAAGGACTGGCACCAGTACCAGCA
GCGCGCCTGCCTCCTCATGTAGTGTCGGCCTGATGGCCGCCGCCGCCACC
ACTCTTCTCTTTCTCCTCCTCCCCCTCGTACAAGTCGCGCAGGCATTTGT
CTTGACCCCATCAGGTGCGGACCGGAGATTTATTGGCGGAGAGCGGAAGC
GGGTAGAGGATTGCCGAAGACGGCCCCCGTCCTTCTTAGGGGCAGGAGAG
GGCGTGGTGGGTGCCCTCGGGAGTGCTTTGGCGGACCGGCAGCAGGCCAG
CAGTAGTAGCTGTTATAGCGATTGTAGTAACAATCCTCTCTCCCCCTCCT
CCTCCTCATCCTCTTCCTCCTCCTCCACCACTTCCTCTTCTTCTACCTCC
TCCCCCACCCCCTCCTCCGCCTTCTCCTCCTCCTCCCAAGCCCTCCCAGC
AATAGTTGCCTCCCCCTCCACCACAACATCGTCTTCCTCCCCCACTGTCG
CCCTCAACCAGTATGGGGAAGACTCTGCAGCCGAAGCCCGGTTCGTGGCG
GAATGTGAGATGCCCACCGACCGTGGTAATTTCCGCATGCGCTCTTATCG
TTGCGGAGGGATATATGCCGCTCTGGAGCCTGTGGCATTGACGTACGGGT
CATTATCGGGAAAGGAAAATGTGCTGGCGCGGATCCATGATCAGTGCCTG
ACGTCAGAAGTGTTTGGGAGTAAGCGGTGCGATTGCAAGGAACAGTTGGG
CATGGCCTTGGACATGATCAAGGAGGGGGGGGGGTTGTGA
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Coding sequence (CDS) from alignment at chr1:288072..288911+

>NO01G01130.1 ID=NO01G01130.1|Name=NO01G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at chr1:288072..288911+ (Nannochloropsis oceanica)
ATGAGACTTTCGACATCACATGCACCACCATTAGGCGCCTGCACCACTGA
CGGGCAAAAAGTAGGACGGCGGAGAAGAAGGACTGGCACCAGTACCAGCA
GCGCGCCTGCCTCCTCATGTAGTGTCGGCCTGATGGCCGCCGCCGCCACC
ACTCTTCTCTTTCTCCTCCTCCCCCTCGTACAAGTCGCGCAGGCATTTGT
CTTGACCCCATCAGGTGCGGACCGGAGATTTATTGGCGGAGAGCGGAAGC
GGGTAGAGGATTGCCGAAGACGGCCCCCGTCCTTCTTAGGGGCAGGAGAG
GGCGTGGTGGGTGCCCTCGGGAGTGCTTTGGCGGACCGGCAGCAGGCCAG
CAGTAGTAGCTGTTATAGCGATTGTAGTAACAATCCTCTCTCCCCCTCCT
CCTCCTCATCCTCTTCCTCCTCCTCCACCACTTCCTCTTCTTCTACCTCC
TCCCCCACCCCCTCCTCCGCCTTCTCCTCCTCCTCCCAAGCCCTCCCAGC
AATAGTTGCCTCCCCCTCCACCACAACATCGTCTTCCTCCCCCACTGTCG
CCCTCAACCAGTATGGGGAAGACTCTGCAGCCGAAGCCCGGTTCGTGGCG
GAATGTGAGATGCCCACCGACCGTGGTAATTTCCGCATGCGCTCTTATCG
TTGCGGAGGGATATATGCCGCTCTGGAGCCTGTGGCATTGACGTACGGGT
CATTATCGGGAAAGGAAAATGTGCTGGCGCGGATCCATGATCAGTGCCTG
ACGTCAGAAGTGTTTGGGAGTAAGCGGTGCGATTGCAAGGAACAGTTGGG
CATGGCCTTGGACATGATCAAGGAGGGGGGGGGGTTGTGA
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Synonyms
Publications