NO01G01130, NO01G01130 (gene) Nannochloropsis oceanica

Overview
NameNO01G01130
Unique NameNO01G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length840
Alignment locationchr1:288072..288911 +

Link to JBrowse

Properties
Property NameValue
DescriptionGtp cyclohydrolase ii
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:288072..288911 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036144RibA-like_sf
IPR032677GTP_cyclohydro_II
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003935GTP cyclohydrolase II activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009231riboflavin biosynthetic process
Homology
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: EWM29043.1 (gtp cyclohydrolase ii [Nannochloropsis gaditana])

HSP 1 Score: 203.4 bits (516), Expect = 9.400e-49
Identity = 138/216 (63.89%), Postives = 147/216 (68.06%), Query Frame = 0 
Query:   64 QAFVLTPSGADRRFIGGERKRVEDCRRRPPSFLGAGEGVVGALGSALADRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVALNQYGEDSAAEARFVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            QAFVL P G DRR +GG RKR+EDCRRRPPSF+G  EG+  ALGSALADRQ XXXXXXXXXXXXXXXXXXXXXXXX                                                 G    AEARFVAEC+MPTDRGNFRMRSYRC G YAALEPVALT+G L G ENVLAR+HDQCLTSEVFGSKRCDCKEQLGMALDMI+E GG+
Sbjct:   66 QAFVLAPPGVDRRIVGG-RKRLEDCRRRPPSFVGTREGIC-ALGSALADRQQXXXXXXXXXXXXXXXXXXXXXXXXTPGRPSVPLVPTRLVSTSFQPPIQQDIAP--------------------GSPGVAEARFVAECDMPTDRGNFRMRSYRCDGDYAALEPVALTHGPLGGAENVLARVHDQCLTSEVFGSKRCDCKEQLGMALDMIREEGGV 259
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BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_005824331.1 (hypothetical protein GUITHDRAFT_47806, partial [Guillardia theta CCMP2712] >EKX37351.1 hypothetical protein GUITHDRAFT_47806, partial [Guillardia theta CCMP2712])

HSP 1 Score: 111.7 bits (278), Expect = 3.700e-21
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:  195 EARFVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGG 279
            +  F+AEC MPTDRG FR+RSYR  G    +EPV +  G L GKE V+ R+HDQC TSEV GSKRCDCKEQL MAL+ I +  G
Sbjct:    2 KTEFIAECHMPTDRGMFRLRSYRYRGA-KIMEPVVMVSGDLRGKEGVVVRVHDQCFTSEVLGSKRCDCKEQLDMALNYINQNSG 84
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BLAST of NO01G01130 vs. NCBI_GenBank
Match: CBN76675.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.5 bits (262), Expect = 2.700e-19
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = 0 
Query:  185 LNQYGEDSAAEARFVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGG 279
            L     +     ++V+EC +PT RG FR+RSYR  G   ++EPV +  G L   E V  R+HDQCLTSEV GS RCDCKEQL +ALD I E GG
Sbjct:  134 LKSSNAEDTTSTQYVSECLLPTPRGKFRLRSYRHEGNGRSMEPVVMVAGDLQDLEGVPVRVHDQCLTSEVLGSLRCDCKEQLELALDYISEHGG 227
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BLAST of NO01G01130 vs. NCBI_GenBank
Match: CBN78023.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.1 bits (261), Expect = 3.500e-19
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGG 279
            FV+EC +PT++GNFR+R+YR        EPV +  G++ G+ENV  R+HDQC TSEV GSKRCDC+EQL ++L  I+E GG
Sbjct:  130 FVSECSLPTEKGNFRLRAYRYADGVKTHEPVVMVAGNVRGRENVPVRVHDQCQTSEVLGSKRCDCREQLDLSLRYIQEHGG 210
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_001418385.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO96678.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 99.4 bits (246), Expect = 1.900e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 0 
Query:  197 RFVAECEMPTDRGNFRMRSYRCGGIYA--ALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGG 278
            RFVAE ++PTD+G +R+R+YR          EPV + YG + G+ENV  R+HD C TSEV GS +CDCK+QL MA+D IKE G
Sbjct:   11 RFVAETKLPTDKGFYRVRAYRHANPTTGDVTEPVCVIYGDVEGRENVPVRVHDACFTSEVLGSMKCDCKQQLEMAMDYIKENG 93
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: GAX96997.1 (GTP cyclohydrolase II [Pythium insidiosum])

HSP 1 Score: 99.0 bits (245), Expect = 2.500e-17
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            F+AE  +PT  G FR+R+YR  G     EP+A+  G +SGK  V  R+HDQC TSEVFGS +CDC+EQL  A D I++ GG+
Sbjct:   53 FIAETNLPTADGFFRVRAYRSTGSLREAEPIAIVSGDVSGKSGVPVRVHDQCFTSEVFGSLKCDCREQLDFAKDYIRQNGGV 134
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BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_024574223.1 (gtp cyclohydrolase ii [Plasmopara halstedii] >CEG37854.1 gtp cyclohydrolase ii [Plasmopara halstedii])

HSP 1 Score: 98.6 bits (244), Expect = 3.300e-17
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EP+A+  G + GK NV  R+HDQC TSEVFGS +CDCKEQL  A    K+ GG+
Sbjct:   43 FVAETALPTDAGMFRVRAYRSVGSLRESEPIAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCKEQLDYAKTYTKQHGGV 124
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_005833389.1 (hypothetical protein GUITHDRAFT_86681 [Guillardia theta CCMP2712] >EKX46409.1 hypothetical protein GUITHDRAFT_86681 [Guillardia theta CCMP2712])

HSP 1 Score: 97.1 bits (240), Expect = 9.500e-17
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 0 
Query:  197 RFVAECEMPTDRGNFRMRSYRCGGI------------YAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGG 279
            +F+AECE+PTDRG FRMR+YR  G             +  +EPV +   +    + V  R+HDQC TSEV GSKRCDCKEQL +ALD I + GG
Sbjct:  138 KFIAECELPTDRGVFRMRAYRYKGAKVVIREGERVLEWTEMEPVVIYKQAKKFVDPVAVRVHDQCYTSEVLGSKRCDCKEQLDLALDYINQFGG 231
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_009531139.1 (hypothetical protein PHYSODRAFT_355010 [Phytophthora sojae] >EGZ13710.1 hypothetical protein PHYSODRAFT_355010 [Phytophthora sojae])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:  198 FVAECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGGGL 280
            FVAE  +PTD G FR+R+YR  G     EPVA+  G + GK NV  R+HDQC TSEVFGS +CDC+EQL  A    K+ GG+
Sbjct:   41 FVAETALPTDGGLFRVRAYRSVGSLRESEPVAMITGDVRGKRNVPVRVHDQCFTSEVFGSLKCDCREQLDYAKAYTKQHGGV 122
[Close]
BLAST of NO01G01130 vs. NCBI_GenBank
Match: XP_005853996.1 (3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [Nannochloropsis gaditana CCMP526] >XP_005854912.1 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [Nannochloropsis gaditana CCMP526] >EKU21456.1 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [Nannochloropsis gaditana CCMP526] >EKU22365.1 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 0 
Query:  190 EDSAAEARFVAECEMPTDRGNFRMRSYRC---GGIYAALEPVALTYGSLSGKENVLARIHDQCLTSEVFGSKRCDCKEQLGMALDMIKEGG 278
            E  A    F+++CE+PTDRG F +R+YR     G    +EPV L  G   G + V  R+HDQCLTSEV GS+RCDCKEQL MALD I   G
Sbjct:   14 EGPAFVFEFISQCELPTDRGLFHLRAYRYTHKTGRRQVVEPVVLFQGEHRGGKQVWVRVHDQCLTSEVLGSRRCDCKEQLEMALDRIVGNG 104
The following BLAST results are available for this feature:
BLAST of NO01G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29043.19.400e-4963.89gtp cyclohydrolase ii [Nannochloropsis gaditana][more]
XP_005824331.13.700e-2160.71hypothetical protein GUITHDRAFT_47806, partial [Gu... [more]
CBN76675.12.700e-1952.13conserved unknown protein [Ectocarpus siliculosus][more]
CBN78023.13.500e-1955.56conserved unknown protein [Ectocarpus siliculosus][more]
XP_001418385.11.900e-1754.22predicted protein [Ostreococcus lucimarinus CCE990... [more]
GAX96997.12.500e-1752.44GTP cyclohydrolase II [Pythium insidiosum][more]
XP_024574223.13.300e-1754.88gtp cyclohydrolase ii [Plasmopara halstedii] >CEG3... [more]
XP_005833389.19.500e-1750.00hypothetical protein GUITHDRAFT_86681 [Guillardia ... [more]
XP_009531139.11.200e-1654.88hypothetical protein PHYSODRAFT_355010 [Phytophtho... [more]
XP_005853996.11.200e-1652.753,4-dihydroxy 2-butanone 4-phosphate synthase / GT... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008256NSK008256Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01130.1NO01G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668197gene_90Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100071g6gene1574Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01130.1NO01G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01130 ID=NO01G01130|Name=NO01G01130|organism=Nannochloropsis oceanica|type=gene|length=840bp
ATGAGACTTTCGACATCACATGCACCACCATTAGGCGCCTGCACCACTGA
CGGGCAAAAAGTAGGACGGCGGAGAAGAAGGACTGGCACCAGTACCAGCA
GCGCGCCTGCCTCCTCATGTAGTGTCGGCCTGATGGCCGCCGCCGCCACC
ACTCTTCTCTTTCTCCTCCTCCCCCTCGTACAAGTCGCGCAGGCATTTGT
CTTGACCCCATCAGGTGCGGACCGGAGATTTATTGGCGGAGAGCGGAAGC
GGGTAGAGGATTGCCGAAGACGGCCCCCGTCCTTCTTAGGGGCAGGAGAG
GGCGTGGTGGGTGCCCTCGGGAGTGCTTTGGCGGACCGGCAGCAGGCCAG
CAGTAGTAGCTGTTATAGCGATTGTAGTAACAATCCTCTCTCCCCCTCCT
CCTCCTCATCCTCTTCCTCCTCCTCCACCACTTCCTCTTCTTCTACCTCC
TCCCCCACCCCCTCCTCCGCCTTCTCCTCCTCCTCCCAAGCCCTCCCAGC
AATAGTTGCCTCCCCCTCCACCACAACATCGTCTTCCTCCCCCACTGTCG
CCCTCAACCAGTATGGGGAAGACTCTGCAGCCGAAGCCCGGTTCGTGGCG
GAATGTGAGATGCCCACCGACCGTGGTAATTTCCGCATGCGCTCTTATCG
TTGCGGAGGGATATATGCCGCTCTGGAGCCTGTGGCATTGACGTACGGGT
CATTATCGGGAAAGGAAAATGTGCTGGCGCGGATCCATGATCAGTGCCTG
ACGTCAGAAGTGTTTGGGAGTAAGCGGTGCGATTGCAAGGAACAGTTGGG
CATGGCCTTGGACATGATCAAGGAGGGGGGGGGGTTGTGA
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protein sequence of NO01G01130.1

>NO01G01130.1-protein ID=NO01G01130.1-protein|Name=NO01G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MRLSTSHAPPLGACTTDGQKVGRRRRRTGTSTSSAPASSCSVGLMAAAAT
TLLFLLLPLVQVAQAFVLTPSGADRRFIGGERKRVEDCRRRPPSFLGAGE
GVVGALGSALADRQQASSSSCYSDCSNNPLSPSSSSSSSSSSTTSSSSTS
SPTPSSAFSSSSQALPAIVASPSTTTSSSSPTVALNQYGEDSAAEARFVA
ECEMPTDRGNFRMRSYRCGGIYAALEPVALTYGSLSGKENVLARIHDQCL
TSEVFGSKRCDCKEQLGMALDMIKEGGGL*
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Synonyms
Publications