NO01G01040, NO01G01040 (gene) Nannochloropsis oceanica

Overview
NameNO01G01040
Unique NameNO01G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr1:261641..262105 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:261641..262105 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036882Alba-like_dom_sf
Homology
[Close]
BLAST of NO01G01040 vs. NCBI_GenBank
Match: EWM29034.1 (hypothetical protein Naga_100071g15 [Nannochloropsis gaditana])

HSP 1 Score: 127.9 bits (320), Expect = 2.800e-26
Identity = 79/133 (59.40%), Postives = 91/133 (68.42%), Query Frame = 0 
Query:   28 TSSPALRNIAVSVNKPSRAFFNIARKAMLEGVDVVQLSALESAIAIAIDTTFLLTSATMAEIESIETAFVDVP----YYHLG---PGXXXXXXXXXXXRKARMTIRLRKTDTFREYARIRQEQFIGIEEFEED 154
            +S+  LR+I +SVNKPSRA FNIARKAMLE  D VQ SALESAIAIAID +FLLT A MA++E IETAFV+VP    +Y  G    G           RKARMTIRL KT+ FR+YA  RQE     EEFEE+
Sbjct:    7 SSNSTLRHIPISVNKPSRANFNIARKAMLESADAVQFSALESAIAIAIDASFLLTRAKMADVERIETAFVEVPLHRHHYQEGQQQKGDQDGQYHERMTRKARMTIRLHKTECFRDYAHTRQEHVDDEEEFEEE 139
The following BLAST results are available for this feature:
BLAST of NO01G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29034.12.800e-2659.40hypothetical protein Naga_100071g15 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01040.1NO01G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627611gene_80Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100071g15gene1583Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01040.1NO01G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01040 ID=NO01G01040|Name=NO01G01040|organism=Nannochloropsis oceanica|type=gene|length=465bp
ATGTCCCGCCCTTCTCCCGCTTTTGCCACAACTCCCGCAGCCGCCGCCGC
TGCCACCTCCACAGTGCCCAATGTCTTGTCCACATCTTCTCCAGCCTTGC
GAAATATTGCGGTTTCTGTCAACAAACCGAGCCGCGCTTTCTTTAATATT
GCACGAAAGGCTATGTTGGAAGGGGTGGACGTTGTGCAGCTCTCAGCTTT
GGAATCTGCTATTGCTATTGCCATTGACACAACCTTCCTTCTGACTAGCG
CTACTATGGCCGAGATTGAAAGCATCGAGACGGCCTTTGTCGACGTCCCT
TATTACCACCTTGGTCCTGGGCAGCAGCAGGAGCATCACCACCACCACAT
GGCCCGTAAGGCCCGCATGACGATCCGTTTGCGCAAGACGGACACTTTCC
GAGAGTACGCACGGATACGTCAAGAGCAATTTATTGGAATCGAAGAATTC
GAGGAAGATGATTGA
back to top

protein sequence of NO01G01040.1

>NO01G01040.1-protein ID=NO01G01040.1-protein|Name=NO01G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MSRPSPAFATTPAAAAAATSTVPNVLSTSSPALRNIAVSVNKPSRAFFNI
ARKAMLEGVDVVQLSALESAIAIAIDTTFLLTSATMAEIESIETAFVDVP
YYHLGPGQQQEHHHHHMARKARMTIRLRKTDTFREYARIRQEQFIGIEEF
EEDD*
back to top
Synonyms
Publications