NO01G01040.1, NO01G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01040.1
Unique NameNO01G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr1:261641..262105 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:261641..262105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01040.1 vs.
Match: EWM29034.1 (hypothetical protein Naga_100071g15 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 1.200e-29
Identity = 83/133 (62.41%), Postives = 97/133 (72.93%), Query Frame = 0 
Query:   28 TSSPALRNIAVSVNKPSRAFFNIARKAMLEGVDVVQLSALESAIAIAIDTTFLLTSATMAEIESIETAFVDVPY--YHLGPGQQQE-----HHHHHMARKARMTIRLRKTDTFREYARIRQEQFIGIEEFEED 154
            +S+  LR+I +SVNKPSRA FNIARKAMLE  D VQ SALESAIAIAID +FLLT A MA++E IETAFV+VP   +H   GQQQ+      +H  M RKARMTIRL KT+ FR+YA  RQE     EEFEE+
Sbjct:    7 SSNSTLRHIPISVNKPSRANFNIARKAMLESADAVQFSALESAIAIAIDASFLLTRAKMADVERIETAFVEVPLHRHHYQEGQQQKGDQDGQYHERMTRKARMTIRLHKTECFRDYAHTRQEHVDDEEEFEEE 139
The following BLAST results are available for this feature:
BLAST of NO01G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29034.11.200e-2962.41hypothetical protein Naga_100071g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01040NO01G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01040.1NO01G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01040.1.cds1NO01G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01040.1 ID=NO01G01040.1|Name=NO01G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp
ATGTCCCGCCCTTCTCCCGCTTTTGCCACAACTCCCGCAGCCGCCGCCGC
TGCCACCTCCACAGTGCCCAATGTCTTGTCCACATCTTCTCCAGCCTTGC
GAAATATTGCGGTTTCTGTCAACAAACCGAGCCGCGCTTTCTTTAATATT
GCACGAAAGGCTATGTTGGAAGGGGTGGACGTTGTGCAGCTCTCAGCTTT
GGAATCTGCTATTGCTATTGCCATTGACACAACCTTCCTTCTGACTAGCG
CTACTATGGCCGAGATTGAAAGCATCGAGACGGCCTTTGTCGACGTCCCT
TATTACCACCTTGGTCCTGGGCAGCAGCAGGAGCATCACCACCACCACAT
GGCCCGTAAGGCCCGCATGACGATCCGTTTGCGCAAGACGGACACTTTCC
GAGAGTACGCACGGATACGTCAAGAGCAATTTATTGGAATCGAAGAATTC
GAGGAAGATGATTGA
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protein sequence of NO01G01040.1

>NO01G01040.1-protein ID=NO01G01040.1-protein|Name=NO01G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MSRPSPAFATTPAAAAAATSTVPNVLSTSSPALRNIAVSVNKPSRAFFNI
ARKAMLEGVDVVQLSALESAIAIAIDTTFLLTSATMAEIESIETAFVDVP
YYHLGPGQQQEHHHHHMARKARMTIRLRKTDTFREYARIRQEQFIGIEEF
EEDD*
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mRNA from alignment at chr1:261641..262105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01040.1 ID=NO01G01040.1|Name=NO01G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp|location=Sequence derived from alignment at chr1:261641..262105- (Nannochloropsis oceanica)
ATGTCCCGCCCTTCTCCCGCTTTTGCCACAACTCCCGCAGCCGCCGCCGC
TGCCACCTCCACAGTGCCCAATGTCTTGTCCACATCTTCTCCAGCCTTGC
GAAATATTGCGGTTTCTGTCAACAAACCGAGCCGCGCTTTCTTTAATATT
GCACGAAAGGCTATGTTGGAAGGGGTGGACGTTGTGCAGCTCTCAGCTTT
GGAATCTGCTATTGCTATTGCCATTGACACAACCTTCCTTCTGACTAGCG
CTACTATGGCCGAGATTGAAAGCATCGAGACGGCCTTTGTCGACGTCCCT
TATTACCACCTTGGTCCTGGGCAGCAGCAGGAGCATCACCACCACCACAT
GGCCCGTAAGGCCCGCATGACGATCCGTTTGCGCAAGACGGACACTTTCC
GAGAGTACGCACGGATACGTCAAGAGCAATTTATTGGAATCGAAGAATTC
GAGGAAGATGATTGA
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Coding sequence (CDS) from alignment at chr1:261641..262105-

>NO01G01040.1 ID=NO01G01040.1|Name=NO01G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr1:261641..262105- (Nannochloropsis oceanica)
ATGTCCCGCCCTTCTCCCGCTTTTGCCACAACTCCCGCAGCCGCCGCCGC
TGCCACCTCCACAGTGCCCAATGTCTTGTCCACATCTTCTCCAGCCTTGC
GAAATATTGCGGTTTCTGTCAACAAACCGAGCCGCGCTTTCTTTAATATT
GCACGAAAGGCTATGTTGGAAGGGGTGGACGTTGTGCAGCTCTCAGCTTT
GGAATCTGCTATTGCTATTGCCATTGACACAACCTTCCTTCTGACTAGCG
CTACTATGGCCGAGATTGAAAGCATCGAGACGGCCTTTGTCGACGTCCCT
TATTACCACCTTGGTCCTGGGCAGCAGCAGGAGCATCACCACCACCACAT
GGCCCGTAAGGCCCGCATGACGATCCGTTTGCGCAAGACGGACACTTTCC
GAGAGTACGCACGGATACGTCAAGAGCAATTTATTGGAATCGAAGAATTC
GAGGAAGATGATTGA
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Synonyms
Publications