NO01G00980, NO01G00980 (gene) Nannochloropsis oceanica

Overview
NameNO01G00980
Unique NameNO01G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1925
Alignment locationchr1:247947..249871 +

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Properties
Property NameValue
DescriptionMannose-6-phosphate receptor binding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:247947..249871 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012913OS9-like
Homology
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_020597097.1 (protein OS-9 homolog isoform X3 [Phalaenopsis equestris])

HSP 1 Score: 115.9 bits (289), Expect = 3.700e-22
Identity = 60/161 (37.27%), Postives = 83/161 (51.55%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPV-PENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRP 486
            L+E +   C+ RHEG+WSYEFC++  +RQ H   + D       K   E+++G F+PV   NF + +    + +D       + +    Y  GT CDLT   R T + FVC E P  V  SIKE  +C Y   I  P LC+HP F +ERP  H + C   P
Sbjct:  112 LIEGIKEKCIYRHEGWWSYEFCHQKHVRQLH---LED------DKPVQEFLMGVFDPVATANFNQNQSDATVLKDPRSKDASQRYHAHVYNNGTLCDLTNQLRETEIRFVCSE-PSVVISSIKEISTCKYVVTIQCPMLCKHPMFHQERPIWHTIHCNEDP 262          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_020597096.1 (protein OS-9 homolog isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 115.9 bits (289), Expect = 3.700e-22
Identity = 60/161 (37.27%), Postives = 83/161 (51.55%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPV-PENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRP 486
            L+E +   C+ RHEG+WSYEFC++  +RQ H   + D       K   E+++G F+PV   NF + +    + +D       + +    Y  GT CDLT   R T + FVC E P  V  SIKE  +C Y   I  P LC+HP F +ERP  H + C   P
Sbjct:  115 LIEGIKEKCIYRHEGWWSYEFCHQKHVRQLH---LED------DKPVQEFLMGVFDPVATANFNQNQSDATVLKDPRSKDASQRYHAHVYNNGTLCDLTNQLRETEIRFVCSE-PSVVISSIKEISTCKYVVTIQCPMLCKHPMFHQERPIWHTIHCNEDP 265          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_011626391.2 (protein OS-9 homolog isoform X1 [Amborella trichopoda])

HSP 1 Score: 115.5 bits (288), Expect = 4.900e-22
Identity = 63/172 (36.63%), Postives = 84/172 (48.84%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEP-VPENFKEEEHVVKIERDGEEGGLKRTFFERE-----------YPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRP 486
            L++ L   C +RHEG+W YEFCY   +RQ H     D      +KI  E+++G ++P V   F      V   +D       + +++ E           Y  GT CDLT + R T V F+C E P     SIKE  +C Y   I  P LCRHP FR+ERPA H + C   P
Sbjct:  155 LIDELKDQCFERHEGWWVYEFCYHKKLRQVH---WED------NKIVQEFVMGTYDPEVTAAFNSNHSGVSTLKDPRSKDAAQRYWKAENLYDSRYHAHLYTNGTVCDLTNEPRETEVRFMCSESPRVSITSIKEISTCKYAVTIQCPMLCRHPMFREERPAWHTINCNEIP 317          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_011626392.2 (protein OS-9 homolog isoform X2 [Amborella trichopoda])

HSP 1 Score: 115.5 bits (288), Expect = 4.900e-22
Identity = 63/172 (36.63%), Postives = 84/172 (48.84%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEP-VPENFKEEEHVVKIERDGEEGGLKRTFFERE-----------YPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRP 486
            L++ L   C +RHEG+W YEFCY   +RQ H     D      +KI  E+++G ++P V   F      V   +D       + +++ E           Y  GT CDLT + R T V F+C E P     SIKE  +C Y   I  P LCRHP FR+ERPA H + C   P
Sbjct:  154 LIDELKDQCFERHEGWWVYEFCYHKKLRQVH---WED------NKIVQEFVMGTYDPEVTAAFNSNHSGVSTLKDPRSKDAAQRYWKAENLYDSRYHAHLYTNGTVCDLTNEPRETEVRFMCSESPRVSITSIKEISTCKYAVTIQCPMLCRHPMFREERPAWHTINCNEIP 316          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_010687838.1 (PREDICTED: protein OS-9 homolog [Beta vulgaris subsp. vulgaris] >KMT02715.1 hypothetical protein BVRB_8g193040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 115.2 bits (287), Expect = 6.300e-22
Identity = 57/157 (36.31%), Postives = 83/157 (52.87%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEP-VPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQC 482
            LLE L  +CL R +G+W+YEFC+K  +RQ H   + D       KI  E+++G ++P   + + + +  + I +D       + +   +Y  GT CDLT   R T V FVC EG   +  SI E  +C Y   + TP LC HP F +ERP  H + C
Sbjct:  116 LLEVLDEHCLLRQDGWWTYEFCFKRTLRQLH---LED------EKIAQEFVLGVYDPEATDAYHQNQSDISILKDPHSKDASQRYHAHQYTNGTVCDLTNQHRETEVRFVCSEGKTTI-TSITELSTCKYALTVQTPMLCAHPLFHEERPVWHAIHC 262          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_005647390.1 (hypothetical protein COCSUDRAFT_24068, partial [Coccomyxa subellipsoidea C-169] >EIE22846.1 hypothetical protein COCSUDRAFT_24068, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 114.0 bits (284), Expect = 1.400e-21
Identity = 66/217 (30.41%), Postives = 104/217 (47.93%), Query Frame = 0
Query:  268 RIGGVNPAPMAVAQLTSMKEMSICNYSMIVCSPLLCDSDTLYSLVSLT---GGAANSQALRLLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPVPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQC 482
            R G   PAP   A++ +MK+     +S  +      D D   +  SL    G A       LL  L + CL R + +W+YE CYK  +RQ+H         + + K+ +EY +G +       +E+  + ++  D    G+   + ++ Y GG  CD+TG+ R T V FVC E   +    ++E  +C Y+   STP+LC HP+FR  +   H V C
Sbjct:   64 RGGSERPAP-GWARVLAMKDKHGRKFSCRIPEVDSTDGDDTGNADSLAIAGGAAVQKSPSELLSALDTLCLYRIDDWWTYELCYKRHVRQFH---------KEIDKVVAEYTLGEYS------EEDSDMDEVHEDSSVAGVSSKYIKQVYKGGEPCDITGEPRETEVRFVCSEASKEGITGMRETATCQYRLTFSTPKLCTHPAFRAPQAPVHHVLC 264          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_020109992.1 (protein OS-9 homolog isoform X2 [Ananas comosus] >OAY62638.1 hypothetical protein ACMD2_07583 [Ananas comosus])

HSP 1 Score: 113.2 bits (282), Expect = 2.400e-21
Identity = 60/163 (36.81%), Postives = 88/163 (53.99%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEP---VPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRP 486
            LL+ L   C  RHEG+WSYEFCY   IRQ H   + D      +++  E+++G F+P      N K+ +  +   +D       + +   +Y  GT CDLT   R T V FVC E P+ +  SIKE  SC Y   + +P LC+HP +++ERP T ++ C + P
Sbjct:  121 LLDVLKDQCFYRHEGWWSYEFCYHRKIRQIH---LED------NEVVQEFVLGEFDPDGTAAHNQKDSDAFML--KDPRSRDASQRYHAHQYTNGTTCDLTDQPRETEVRFVCAESPV-IISSIKEISSCKYVVTVQSPMLCKHPMYQQERP-TRLIHCNQLP 270          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: XP_020109991.1 (protein OS-9 homolog isoform X1 [Ananas comosus])

HSP 1 Score: 113.2 bits (282), Expect = 2.400e-21
Identity = 60/163 (36.81%), Postives = 88/163 (53.99%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEP---VPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRP 486
            LL+ L   C  RHEG+WSYEFCY   IRQ H   + D      +++  E+++G F+P      N K+ +  +   +D       + +   +Y  GT CDLT   R T V FVC E P+ +  SIKE  SC Y   + +P LC+HP +++ERP T ++ C + P
Sbjct:  124 LLDVLKDQCFYRHEGWWSYEFCYHRKIRQIH---LED------NEVVQEFVLGEFDPDGTAAHNQKDSDAFML--KDPRSRDASQRYHAHQYTNGTTCDLTDQPRETEVRFVCAESPV-IISSIKEISSCKYVVTVQSPMLCKHPMYQQERP-TRLIHCNQLP 273          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: NP_001242361.1 (uncharacterized protein LOC100792441 precursor [Glycine max] >ACU20144.1 unknown [Glycine max])

HSP 1 Score: 112.5 bits (280), Expect = 4.100e-21
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEP-VPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRPVQKLLGLQEKEGEEDE 502
            LLE L   C  R EG+WSYEFCY+  +RQ H   + D       K+  E+++GA++P     F E    +   +D       + +   +Y  GT CDLT   R T V FVC E P  +  SI E  +C Y   +  P LC+HP F++ERP  H++ C   P   +     +E E  E
Sbjct:  112 LLEVLKGPCFVRQEGWWSYEFCYQKKLRQLH---LED------DKVVQEFVLGAYDPEATAAFNENLSDISTLKDPRSKDASQRYHAHQYTNGTVCDLTNKPRETEVRFVCSE-PRPMISSITEISTCKYALTVQCPSLCKHPLFQEERPVWHIIDCNVLPKDHVGAKVRQENENTE 278          
BLAST of NO01G00980 vs. NCBI_GenBank
Match: KHN48127.1 (Protein OS-9 [Glycine soja])

HSP 1 Score: 112.5 bits (280), Expect = 4.100e-21
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = 0
Query:  326 LLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEP-VPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRPVQKLLGLQEKEGEEDE 502
            LLE L   C  R EG+WSYEFCY+  +RQ H   + D       K+  E+++GA++P     F E    +   +D       + +   +Y  GT CDLT   R T V FVC E P  +  SI E  +C Y   +  P LC+HP F++ERP  H++ C   P   +     +E E  E
Sbjct:  112 LLEVLKGPCFVRQEGWWSYEFCYQKKLRQLH---LED------DKVVQEFVLGAYDPEATAAFNENLSDISTLKDPRSKDASQRYHAHQYTNGTVCDLTNKPRETEVRFVCSE-PRPMISSITEISTCKYALTVQCPSLCKHPLFQEERPVWHIIDCNVLPKDHVGAKVRQENENTE 278          
The following BLAST results are available for this feature:
BLAST of NO01G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_020597097.13.700e-2237.27protein OS-9 homolog isoform X3 [Phalaenopsis eque... [more]
XP_020597096.13.700e-2237.27protein OS-9 homolog isoform X2 [Phalaenopsis eque... [more]
XP_011626391.24.900e-2236.63protein OS-9 homolog isoform X1 [Amborella trichop... [more]
XP_011626392.24.900e-2236.63protein OS-9 homolog isoform X2 [Amborella trichop... [more]
XP_010687838.16.300e-2236.31PREDICTED: protein OS-9 homolog [Beta vulgaris sub... [more]
XP_005647390.11.400e-2130.41hypothetical protein COCSUDRAFT_24068, partial [Co... [more]
XP_020109992.12.400e-2136.81protein OS-9 homolog isoform X2 [Ananas comosus] >... [more]
XP_020109991.12.400e-2136.81protein OS-9 homolog isoform X1 [Ananas comosus][more]
NP_001242361.14.100e-2135.03uncharacterized protein LOC100792441 precursor [Gl... [more]
KHN48127.14.100e-2135.03Protein OS-9 [Glycine soja][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008278NSK008278Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00980.1NO01G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576126gene_74Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100071g21gene1588Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00980.1NO01G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00980 ID=NO01G00980|Name=NO01G00980|organism=Nannochloropsis oceanica|type=gene|length=1925bp
CCCTGGGCAACGGCTACTCGTCAGTTGGAACGAGGAAGCTTCTTGTCAGT
TCAAAAGCAGCCCTTGTGCCCTCTACCCATCCACAAACACTGAGGCTCAA
ATTACTTGGCTTCATGACGAAGTGTAATCCCTCACAGGTCATCTGGCCAT
TCGTCTCTCACGCTCCCTTCATCTCTCACTGACAGAAGCAAGGACACGAC
CCGCAGCGAGCATCATCATCATCATGCCTCCCGCCTGTGCACCTAAACGA
AGACGCCTTCTTTCTCCATCCGTCGTCCTGGTTCTTCTTACCGCCAGCAC
CAGCACGCATGCCGTGAATCTCAAGTCGGATGGGAAGGGTGGTTCCTACC
ACCCCCCGTCCTCCACCCTCAGCCTGGGTGCGGAAGGCGACACCTACACT
TTCGACACCAAGGTCCGCACGCTCGAGATCCTCAAGCATTTGCGTCAGGG
CGACTTGCCGTTGGAGGTATTGGACGAGTATCTACCGGGGAATGGCACGG
TGGACTTTCAACTTGCAATGAAGGCTTGGGACGGGAGTGACTTCACCTGC
GCCCCCGTCCCTCAACCCGGACAGCAGGAAAAGAAGCTGGGACAAGCAGG
CGCAGAAGGAGAAGAAGACGGGAACAAAGGAGTAGTCGCCGCACCTCTCT
CTTCGCTGGGGGAGCCACCCGAGGCATTGGATCAGAAATTGACGGTACTT
GAGAATACGTGCGCGATGTTGCGGACGCCAGGCTATTGGGGTTATGAATG
GTGCCATCGTCGGGAAGTGCGCCAATTTCACGAGATTTCGCCTCCGGAAG
GTGTGGAAGCCAACGCTGTGGGTGTCAGAGATCCGATTTGGAGCTTGGGG
AAATTTGTTAGGACTGAAACGAGGTATTTTGATGGGAGGAAGGAGAAAGG
GGTGGCGTCAGTGGTGGACTACTTTGCTGACGGGCAGATGTGTGACGAGA
CAGGGATCGGGAGGCAGACAGCGGTGGAGTTCTATTGTTGTAGTGGCGAG
AGGTTGCCACCTGATGTGAGAACGAGGATTGGGGGGGTCAATCCGGCGCC
GATGGCTGTTGCGCAATTGACTAGCATGAAAGAGATGTCGATTTGTAATT
ACTCTATGATTGTTTGCTCGCCTCTCCTATGTGACAGTGACACGCTGTAC
TCCCTCGTGAGCTTGACGGGGGGTGCGGCTAACTCGCAGGCGTTGAGGTT
GTTAGAGCCACTTGCGTCGTATTGCCTGAAGAGGCATGAAGGGTTCTGGT
CGTATGAATTTTGTTACAAGGGCGCGATTCGACAGTACCATACTGTGGCT
ATGCGGGATTCCACGGGCCAGGTGATGAGCAAGATAGAGAGTGAATATAT
AATTGGTGCGTTCGAGCCTGTGCCGGAAAATTTCAAGGAGGAGGAGCACG
TTGTGAAGATAGAGAGGGATGGGGAGGAGGGGGGGCTGAAGAGGACATTT
TTTGAGAGGGAGTACCCGGGGGGTACGGAGTGTGATCTGACGGGGGACAA
GCGGGCGACGACAGTGGAATTTGTGTGTGGGGAGGGTCCGCTGGACGTGT
TTGAGTCAATAAAGGAGGATCGATCGTGTCATTACAAGGCGGTCATATCT
ACGCCGAGGTTGTGCCGACATCCATCGTTTCGGAAGGAGCGACCGGCGAC
GCATGTGGTGCAGTGTAAGCGACGGCCGGTGCAGAAATTGTTGGGCTTAC
AGGAAAAAGAGGGGGAGGAGGATGAGGGGGATGAGGAGGATTACGTATTG
GACGAGGATAACACATATGCGGACGAGGAAGGCGTGTATCCTAACGCAAT
TTGAGACCAATAAGCACACGAGCAAAAGAAAATGTGTATATGTTGAGTAC
GCATGTAATATTTGTGGATATGTGGGCAACGGGGCCACTGCATCAACATT
TTTAAATTTATTATGCTAACGTTTG
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protein sequence of NO01G00980.1

>NO01G00980.1-protein ID=NO01G00980.1-protein|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MPPACAPKRRRLLSPSVVLVLLTASTSTHAVNLKSDGKGGSYHPPSSTLS
LGAEGDTYTFDTKVRTLEILKHLRQGDLPLEVLDEYLPGNGTVDFQLAMK
AWDGSDFTCAPVPQPGQQEKKLGQAGAEGEEDGNKGVVAAPLSSLGEPPE
ALDQKLTVLENTCAMLRTPGYWGYEWCHRREVRQFHEISPPEGVEANAVG
VRDPIWSLGKFVRTETRYFDGRKEKGVASVVDYFADGQMCDETGIGRQTA
VEFYCCSGERLPPDVRTRIGGVNPAPMAVAQLTSMKEMSICNYSMIVCSP
LLCDSDTLYSLVSLTGGAANSQALRLLEPLASYCLKRHEGFWSYEFCYKG
AIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPVPENFKEEEHVVKIERDG
EEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDR
SCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRPVQKLLGLQEKEGEED
EGDEEDYVLDEDNTYADEEGVYPNAI*
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Synonyms
Publications