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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:247947..249871 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00980.1 vs.
Match: EWM29025.1 (Mannose-6-phosphate receptor binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 538.9 bits (1387), Expect = 1.800e-149 Identity = 271/481 (56.34%), Postives = 346/481 (71.93%), Query Frame = 0
Query: 6 APKRRRLLSPSVVLVLLTASTSTHAVNLKSDGKGGSYHPPSSTLSL---GAEGDTYTFDTKVRTLEILKHLRQGDLPLEVLDEYLPGNGTVDFQLAMKAWDGSDFTCAPVPQPGQQEKKLGQAGAEGEEDGNKGVVAAPLSSLGEPPEALDQKLTVLENTCAMLRTPGYWGYEWCHRREVRQFHEISPPEGVEANAVGVRDPIWSLGKFVRTETRYFDGRKEKGVASVVDYFADGQMCDETGIGRQTAVEFYCCSGERLPPDVRTRIGGVNPAPMAVAQLTSMKEMSICNYSMIVCSPLLCDSDTLYSLVSLTGGAANSQALRLLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPVPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKR 484
A KRR LL+ V + +T + ++ KG + +S LS+ G E Y+FDTKVRTLEILKHLRQGD+PLEVL E LPGNG+VDFQ+++KAWDGS+FTCAP+PQ + +K++ G+ + PEAL++ L +NTCA+L YW YEWCHRREVRQFH +P + E +A VRDP WSLGK+ +TE +G ++G +VVDYF GQ+C ETG GRQT VEFYCC+ LP +V+ RI V P AVAQL S++E++ C Y++IVCSPLLCD+ L + +LTG AA SQAL+LLEP+AS CL+RH+G+WSYEFCY G+IRQ+HTVA+R++TG V+SK+ESEYIIG +PVPE FKEE+H++ + EE G + F+ +Y GGT CDLTG+ RATTV+F+CGEGP+DVF SIKEDRSCHYKAVISTP+LCRHPSFRKE+P THVV CKR
Sbjct: 8 ARKRRPLLALITTSVAIACYAAT-PIPWEAREKGNDFAGSTSPLSIVGPGGEDGAYSFDTKVRTLEILKHLRQGDVPLEVLHEILPGNGSVDFQVSIKAWDGSNFTCAPIPQESEHDKEVDNIGSAH-------------IFKDKAPEALNKNL---DNTCAILNKD-YWSYEWCHRREVRQFHLNTPVDTEEPSAEPVRDPDWSLGKYAKTEVLTPEGG-DRGAMAVVDYFVGGQLCHETGQGRQTIVEFYCCADGSLPSEVQARIADVTRVPYAVAQLMSVEEIATCKYAIIVCSPLLCDAQQLATRATLTGPAAASQALQLLEPMASQCLRRHDGYWSYEFCYNGSIRQFHTVAVREATGNVVSKVESEYIIGTSQPVPEGFKEEDHII---LNKEEEGGDPSLFQMDYTGGTVCDLTGEVRATTVQFICGEGPVDVFVSIKEDRSCHYKAVISTPKLCRHPSFRKEKPPTHVVHCKR 466
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00980.1 ID=NO01G00980.1|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp CCCTGGGCAACGGCTACTCGTCAGTTGGAACGAGGAAGCTTCTTGTCAGT TCAAAAGCAGCCCTTGTGCCCTCTACCCATCCACAAACACTGAGGCTCAA ATTACTTGGCTTCATGACGAAGTGTAATCCCTCACAGGTCATCTGGCCAT TCGTCTCTCACGCTCCCTTCATCTCTCACTGACAGAAGCAAGGACACGAC CCGCAGCGAGCATCATCATCATCATGCCTCCCGCCTGTGCACCTAAACGA AGACGCCTTCTTTCTCCATCCGTCGTCCTGGTTCTTCTTACCGCCAGCAC CAGCACGCATGCCGTGAATCTCAAGTCGGATGGGAAGGGTGGTTCCTACC ACCCCCCGTCCTCCACCCTCAGCCTGGGTGCGGAAGGCGACACCTACACT TTCGACACCAAGGTCCGCACGCTCGAGATCCTCAAGCATTTGCGTCAGGG CGACTTGCCGTTGGAGGTATTGGACGAGTATCTACCGGGGAATGGCACGG TGGACTTTCAACTTGCAATGAAGGCTTGGGACGGGAGTGACTTCACCTGC GCCCCCGTCCCTCAACCCGGACAGCAGGAAAAGAAGCTGGGACAAGCAGG CGCAGAAGGAGAAGAAGACGGGAACAAAGGAGTAGTCGCCGCACCTCTCT CTTCGCTGGGGGAGCCACCCGAGGCATTGGATCAGAAATTGACGGTACTT GAGAATACGTGCGCGATGTTGCGGACGCCAGGCTATTGGGGTTATGAATG GTGCCATCGTCGGGAAGTGCGCCAATTTCACGAGATTTCGCCTCCGGAAG GTGTGGAAGCCAACGCTGTGGGTGTCAGAGATCCGATTTGGAGCTTGGGG AAATTTGTTAGGACTGAAACGAGGTATTTTGATGGGAGGAAGGAGAAAGG GGTGGCGTCAGTGGTGGACTACTTTGCTGACGGGCAGATGTGTGACGAGA CAGGGATCGGGAGGCAGACAGCGGTGGAGTTCTATTGTTGTAGTGGCGAG AGGTTGCCACCTGATGTGAGAACGAGGATTGGGGGGGTCAATCCGGCGCC GATGGCTGTTGCGCAATTGACTAGCATGAAAGAGATGTCGATTTGTAATT ACTCTATGATTGTTTGCTCGCCTCTCCTATGTGACAGTGACACGCTGTAC TCCCTCGTGAGCTTGACGGGGGGTGCGGCTAACTCGCAGGCGTTGAGGTT GTTAGAGCCACTTGCGTCGTATTGCCTGAAGAGGCATGAAGGGTTCTGGT CGTATGAATTTTGTTACAAGGGCGCGATTCGACAGTACCATACTGTGGCT ATGCGGGATTCCACGGGCCAGGTGATGAGCAAGATAGAGAGTGAATATAT AATTGGTGCGTTCGAGCCTGTGCCGGAAAATTTCAAGGAGGAGGAGCACG TTGTGAAGATAGAGAGGGATGGGGAGGAGGGGGGGCTGAAGAGGACATTT TTTGAGAGGGAGTACCCGGGGGGTACGGAGTGTGATCTGACGGGGGACAA GCGGGCGACGACAGTGGAATTTGTGTGTGGGGAGGGTCCGCTGGACGTGT TTGAGTCAATAAAGGAGGATCGATCGTGTCATTACAAGGCGGTCATATCT ACGCCGAGGTTGTGCCGACATCCATCGTTTCGGAAGGAGCGACCGGCGAC GCATGTGGTGCAGTGTAAGCGACGGCCGGTGCAGAAATTGTTGGGCTTAC AGGAAAAAGAGGGGGAGGAGGATGAGGGGGATGAGGAGGATTACGTATTG GACGAGGATAACACATATGCGGACGAGGAAGGCGTGTATCCTAACGCAAT TTGAGACCAATAAGCACACGAGCAAAAGAAAATGTGTATATGTTGAGTAC GCATGTAATATTTGTGGATATGTGGGCAACGGGGCCACTGCATCAACATT TTTAAATTTATTATGCTAACGTTTG back to topprotein sequence of NO01G00980.1 >NO01G00980.1-protein ID=NO01G00980.1-protein|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp MPPACAPKRRRLLSPSVVLVLLTASTSTHAVNLKSDGKGGSYHPPSSTLS LGAEGDTYTFDTKVRTLEILKHLRQGDLPLEVLDEYLPGNGTVDFQLAMK AWDGSDFTCAPVPQPGQQEKKLGQAGAEGEEDGNKGVVAAPLSSLGEPPE ALDQKLTVLENTCAMLRTPGYWGYEWCHRREVRQFHEISPPEGVEANAVG VRDPIWSLGKFVRTETRYFDGRKEKGVASVVDYFADGQMCDETGIGRQTA VEFYCCSGERLPPDVRTRIGGVNPAPMAVAQLTSMKEMSICNYSMIVCSP LLCDSDTLYSLVSLTGGAANSQALRLLEPLASYCLKRHEGFWSYEFCYKG AIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPVPENFKEEEHVVKIERDG EEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDR SCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRPVQKLLGLQEKEGEED EGDEEDYVLDEDNTYADEEGVYPNAI* back to topmRNA from alignment at chr1:247947..249871+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00980.1 ID=NO01G00980.1|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp|location=Sequence derived from alignment at chr1:247947..249871+ (Nannochloropsis oceanica) CCCTGGGCAACGGCTACTCGTCAGTTGGAACGAGGAAGCTTCTTGTCAGT
TCAAAAGCAGCCCTTGTGCCCTCTACCCATCCACAAACACTGAGGCTCAA
ATTACTTGGCTTCATGACGAAGTGTAATCCCTCACAGGTCATCTGGCCAT
TCGTCTCTCACGCTCCCTTCATCTCTCACTGACAGAAGCAAGGACACGAC
CCGCAGCGAGCATCATCATCATCATGCCTCCCGCCTGTGCACCTAAACGA
AGACGCCTTCTTTCTCCATCCGTCGTCCTGGTTCTTCTTACCGCCAGCAC
CAGCACGCATGCCGTGAATCTCAAGTCGGATGGGAAGGGTGGTTCCTACC
ACCCCCCGTCCTCCACCCTCAGCCTGGGTGCGGAAGGCGACACCTACACT
TTCGACACCAAGGTCCGCACGCTCGAGATCCTCAAGCATTTGCGTCAGGG
CGACTTGCCGTTGGAGGTATTGGACGAGTATCTACCGGGGAATGGCACGG
TGGACTTTCAACTTGCAATGAAGGCTTGGGACGGGAGTGACTTCACCTGC
GCCCCCGTCCCTCAACCCGGACAGCAGGAAAAGAAGCTGGGACAAGCAGG
CGCAGAAGGAGAAGAAGACGGGAACAAAGGAGTAGTCGCCGCACCTCTCT
CTTCGCTGGGGGAGCCACCCGAGGCATTGGATCAGAAATTGACGGTACTT
GAGAATACGTGCGCGATGTTGCGGACGCCAGGCTATTGGGGTTATGAATG
GTGCCATCGTCGGGAAGTGCGCCAATTTCACGAGATTTCGCCTCCGGAAG
GTGTGGAAGCCAACGCTGTGGGTGTCAGAGATCCGATTTGGAGCTTGGGG
AAATTTGTTAGGACTGAAACGAGGTATTTTGATGGGAGGAAGGAGAAAGG
GGTGGCGTCAGTGGTGGACTACTTTGCTGACGGGCAGATGTGTGACGAGA
CAGGGATCGGGAGGCAGACAGCGGTGGAGTTCTATTGTTGTAGTGGCGAG
AGGTTGCCACCTGATGTGAGAACGAGGATTGGGGGGGTCAATCCGGCGCC
GATGGCTGTTGCGCAATTGACTAGCATGAAAGAGATGTCGATTTGTAATT
ACTCTATGATTGTTTGCTCGCCTCTCCTATGTGACAGTGACACGCTGTAC
TCCCTCGTGAGCTTGACGGGGGGTGCGGCTAACTCGCAGGCGTTGAGGTT
GTTAGAGCCACTTGCGTCGTATTGCCTGAAGAGGCATGAAGGGTTCTGGT
CGTATGAATTTTGTTACAAGGGCGCGATTCGACAGTACCATACTGTGGCT
ATGCGGGATTCCACGGGCCAGGTGATGAGCAAGATAGAGAGTGAATATAT
AATTGGTGCGTTCGAGCCTGTGCCGGAAAATTTCAAGGAGGAGGAGCACG
TTGTGAAGATAGAGAGGGATGGGGAGGAGGGGGGGCTGAAGAGGACATTT
TTTGAGAGGGAGTACCCGGGGGGTACGGAGTGTGATCTGACGGGGGACAA
GCGGGCGACGACAGTGGAATTTGTGTGTGGGGAGGGTCCGCTGGACGTGT
TTGAGTCAATAAAGGAGGATCGATCGTGTCATTACAAGGCGGTCATATCT
ACGCCGAGGTTGTGCCGACATCCATCGTTTCGGAAGGAGCGACCGGCGAC
GCATGTGGTGCAGTGTAAGCGACGGCCGGTGCAGAAATTGTTGGGCTTAC
AGGAAAAAGAGGGGGAGGAGGATGAGGGGGATGAGGAGGATTACGTATTG
GACGAGGATAACACATATGCGGACGAGGAAGGCGTGTATCCTAACGCAAT
TTGAGACCAATAAGCACACGAGCAAAAGAAAATGTGTATATGTTGAGTAC
GCATGTAATATTTGTGGATATGTGGGCAACGGGGCCACTGCATCAACATT
TTTAAATTTATTATGCTAACGTTTG back to topCoding sequence (CDS) from alignment at chr1:247947..249871+ >NO01G00980.1 ID=NO01G00980.1|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr1:247947..249871+ (Nannochloropsis oceanica) ATGCCTCCCGCCTGTGCACCTAAACGAAGACGCCTTCTTTCTCCATCCGT CGTCCTGGTTCTTCTTACCGCCAGCACCAGCACGCATGCCGTGAATCTCA AGTCGGATGGGAAGGGTGGTTCCTACCACCCCCCGTCCTCCACCCTCAGC CTGGGTGCGGAAGGCGACACCTACACTTTCGACACCAAGGTCCGCACGCT CGAGATCCTCAAGCATTTGCGTCAGGGCGACTTGCCGTTGGAGGTATTGG ACGAGTATCTACCGGGGAATGGCACGGTGGACTTTCAACTTGCAATGAAG GCTTGGGACGGGAGTGACTTCACCTGCGCCCCCGTCCCTCAACCCGGACA GCAGGAAAAGAAGCTGGGACAAGCAGGCGCAGAAGGAGAAGAAGACGGGA ACAAAGGAGTAGTCGCCGCACCTCTCTCTTCGCTGGGGGAGCCACCCGAG GCATTGGATCAGAAATTGACGGTACTTGAGAATACGTGCGCGATGTTGCG GACGCCAGGCTATTGGGGTTATGAATGGTGCCATCGTCGGGAAGTGCGCC AATTTCACGAGATTTCGCCTCCGGAAGGTGTGGAAGCCAACGCTGTGGGT GTCAGAGATCCGATTTGGAGCTTGGGGAAATTTGTTAGGACTGAAACGAG GTATTTTGATGGGAGGAAGGAGAAAGGGGTGGCGTCAGTGGTGGACTACT TTGCTGACGGGCAGATGTGTGACGAGACAGGGATCGGGAGGCAGACAGCG GTGGAGTTCTATTGTTGTAGTGGCGAGAGGTTGCCACCTGATGTGAGAAC GAGGATTGGGGGGGTCAATCCGGCGCCGATGGCTGTTGCGCAATTGACTA GCATGAAAGAGATGTCGATTTGTAATTACTCTATGATTGTTTGCTCGCCT CTCCTATGTGACAGTGACACGCTGTACTCCCTCGTGAGCTTGACGGGGGG TGCGGCTAACTCGCAGGCGTTGAGGTTGTTAGAGCCACTTGCGTCGTATT GCCTGAAGAGGCATGAAGGGTTCTGGTCGTATGAATTTTGTTACAAGGGC GCGATTCGACAGTACCATACTGTGGCTATGCGGGATTCCACGGGCCAGGT GATGAGCAAGATAGAGAGTGAATATATAATTGGTGCGTTCGAGCCTGTGC CGGAAAATTTCAAGGAGGAGGAGCACGTTGTGAAGATAGAGAGGGATGGG GAGGAGGGGGGGCTGAAGAGGACATTTTTTGAGAGGGAGTACCCGGGGGG TACGGAGTGTGATCTGACGGGGGACAAGCGGGCGACGACAGTGGAATTTG TGTGTGGGGAGGGTCCGCTGGACGTGTTTGAGTCAATAAAGGAGGATCGA TCGTGTCATTACAAGGCGGTCATATCTACGCCGAGGTTGTGCCGACATCC ATCGTTTCGGAAGGAGCGACCGGCGACGCATGTGGTGCAGTGTAAGCGAC GGCCGGTGCAGAAATTGTTGGGCTTACAGGAAAAAGAGGGGGAGGAGGAT GAGGGGGATGAGGAGGATTACGTATTGGACGAGGATAACACATATGCGGA CGAGGAAGGCGTGTATCCTAACGCAATTTGA back to top
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