NO01G00920, NO01G00920 (gene) Nannochloropsis oceanica

Overview
NameNO01G00920
Unique NameNO01G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1417
Alignment locationchr1:231344..232760 -

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Properties
Property NameValue
DescriptionAtp synthase subunit epsilon
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:231344..232760 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0000275mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: INTERPRO
TermDefinition
IPR036742ATP_synth_F1_esu_sf_mt
IPR006721ATPase_F1-cplx_esu_mt
Homology
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BLAST of NO01G00920 vs. NCBI_GenBank
Match: EWM29021.1 (atp synthase subunit epsilon [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 2.600e-27
Identity = 64/71 (90.14%), Postives = 70/71 (98.59%), Query Frame = 0 
Query:   51 AAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIYYKKLPWTPKLIGQPVGPLKVEVTSLK 122
            +AAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKI++K+L W+PK+IGQPVGPLKVEVTSLK
Sbjct:    2 SAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
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BLAST of NO01G00920 vs. NCBI_GenBank
Match: XP_002499555.1 (H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily [Micromonas commoda] >ACO60813.1 H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily [Micromonas commoda])

HSP 1 Score: 63.5 bits (153), Expect = 5.100e-7
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0 
Query:   49 MSAAA-ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIYYKKLPWTPKLIGQPV 111
            MSAAA + +YWRIAG++YL+Y+S  A V+R  LKEP  TK   +E +Y+K + WT    G+PV
Sbjct:    1 MSAAANSASYWRIAGMSYLKYSSMCAEVVRGCLKEPFLTKAKPREAVYFKSVKWTDGKPGKPV 63
The following BLAST results are available for this feature:
BLAST of NO01G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29021.12.600e-2790.14atp synthase subunit epsilon [Nannochloropsis gadi... [more]
XP_002499555.15.100e-750.79H+-or Na+-translocating f-type, v-type and A-type ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008287NSK008287Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00920.1NO01G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576092gene_66Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100477g3gene1595Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00920.1NO01G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00920 ID=NO01G00920|Name=NO01G00920|organism=Nannochloropsis oceanica|type=gene|length=1417bp
TGGCTCGTGAATGATGATGCCTTGCACGCCCCACACGCCAAGCCACGGCC
TCTTCCGCCTCATTGCTCCCCTGTGCTTGAGTGTCTTGTCGATGTGCAGG
CGCGCTTTGACTGTGTGTCTCACGGTTTGTGCGCTGTACTGATATATGTC
ACATGTGTGTGGCAGGGCGGAGCACCCCTTCGTCCTCTCTCCCACTAACG
CCCGCCACCGGCCGCGGTGGCAAACAACAACAACCTGAATCCTTTTTGTC
TCACTTCCAAGCCCACAACCACAACACTTACACCACAGGGATAGCCATGT
CTGCCGCAGCCGCCACCACCTACTGGCGCATTGCGGGCCTGACGTACTTG
CAGgtaagttgtgtcggattgctgggattccttcgtctctcgccccccct
ccctccctccctccctaattcgttcgtctcctcacaactccactacgatg
acttatctgctcacaccacctctcccacacccacacacttcttgacaaac
agTACACGAGCAAGGCGGCGGGTGTGCTGCGTGCGGCACTCAAGgtacgt
ccagcaagcgagcgacagtaggcggtgaagggagggagggagaggggcag
ggagggagggagaggggcagggaggaagggactgcgatgagctagaagcg
catggccgacaatgccatgagtctgctattttacgtgtcgcgatggcagg
gaagaagaattgtcaagcgtgttaatgagagcgatgtcaacctcgatggt
cacgtgccgagcacagcaagaaatctcaccacctccctccctccctccct
ccttcccttcctctctcccgtgtccttgtcctcacagGAGCCTCTCCGTA
CCAAGACGATGGCCAAGGAGAAGATCTACTACAAGAAGCTGCCCTGGACC
CCGAAGCTGATCGGCCAGCCCGTGGGACCGCTCAAGGgtaagagcgggtg
ggagcaagggagggaaggaggaagggacgaaaggagagaaaggtaaataa
aaggaaggaaggacatgtaaacatgccagtactcactcttggcttttttt
cctgtttttccgcacataattttacacgcgtacgaacagTGGAGGTGACG
TCGCTAAAGTAAGGAGAAGGAGTAACTGCGGCGTGAAGACAAGGGAGGGA
GGGGCTGTGTGTGTAGTAAGTAGTGAGGAGAGGGGGAGGCAGCGGGGTGC
GAGGAATGGAGGAGATGCAGTGAGACACGAGTCTCTCGTGGCTGTAGTTG
GAATGAGTGTGCGGTGGCTTTGGTGAGGGTGAAACGAAGACGAAAAAGAA
GACAACAAAGGAGGGGACAAGGAAAAAGAGCTATAAGGTGGCATAGTCGT
ATGGGGACAGCCAACAGGACAGAAGCGGAAATGGTGGTATACCTCGCTCG
AGGTATTACTTTTATTC
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protein sequence of NO01G00920.1

>NO01G00920.1-protein ID=NO01G00920.1-protein|Name=NO01G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MCVAGRSTPSSSLPLTPATGRGGKQQQPESFLSHFQAHNHNTYTTGIAMS
AAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIYYKKLP
WTPKLIGQPVGPLKVEVTSLK*
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Synonyms
Publications