NO01G00700, NO01G00700 (gene) Nannochloropsis oceanica

Overview
NameNO01G00700
Unique NameNO01G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1246
Alignment locationchr1:177685..178930 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:177685..178930 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G00700 vs. NCBI_GenBank
Match: EWM29003.1 (hypothetical protein Naga_101720g1 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 1.100e-29
Identity = 69/92 (75.00%), Postives = 83/92 (90.22%), Query Frame = 0 
Query:   68 SLDQLLLTDIDYRDDDYEEEDDADTELQRLRQEYIKSVARAQKAFKVRMESMFKCREDREDLHWRLIEQHQRTIADYDRRLCLATDDQAKKV 160
            SL++LLLTDIDY+D D+EEED AD ELQRLRQEYIKSV RAQKAFK RMESM+KCR+D+ED H +L+EQHQ+ +AD+DRRL LATDDQAK++
Sbjct:  217 SLEKLLLTDIDYQDSDFEEEDSADQELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRL 308
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BLAST of NO01G00700 vs. NCBI_GenBank
Match: EWM22963.1 (serine threonine protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 8.400e-9
Identity = 33/92 (35.87%), Postives = 62/92 (67.39%), Query Frame = 0 
Query:   83 DYEEEDDADTELQRLRQEYIKSVARAQKAFKVRMESMFKCREDREDLHWRLIEQHQRTIADYDRRLCLATDDQAKKVQDMRQHFIDARQAHR 175
            D  ++ D D E+ RLR +Y K + R+QKAF +R+E+M K R+++E+ H +L+E+H R +AD++R++  A  +Q  ++Q++ + +   +  HR
Sbjct: 1147 DGGDDLDGDGEITRLRSDYEKGLQRSQKAFSIRLENMRKSRQEKEESHRKLLEKHMRDMADFERKVRTAEKEQIMRLQELEEQWRTVKMEHR 1238
The following BLAST results are available for this feature:
BLAST of NO01G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29003.11.100e-2975.00hypothetical protein Naga_101720g1 [Nannochloropsi... [more]
EWM22963.18.400e-935.87serine threonine protein kinase [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00700.1NO01G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101720g1gene1612Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00700.1NO01G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00700 ID=NO01G00700|Name=NO01G00700|organism=Nannochloropsis oceanica|type=gene|length=1246bp
ATGCCACGCACGGCCTCCTATGACCTTCTCGTCAGCGAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAACAGC
AGCGGCGTTTGCACGAGCAGCAGGAGGGGGAAAGAGAGGACGGGAAGGAG
GGAAGGAAGGAAGGAGGGAGGGAGGGAGGGATTGCGACTGTCCTGCCTCA
GAGCTTGGACCAGCTGCTCTTGACGGATATAGgtacgtatggaggaagga
aggaagggagggaggaagggagggagggagggagggagggagggatgaat
ggatgtatttttgtgtcgcttttcgaacgatttttggttgcgctctgtca
cccccgtcccttctctcaccctctccctccctccctccctccctccctcc
ctccgtccagACTACCGTGACGACGACTATGAGGAGGAGGATGATGCCGA
CACTGgtgagtgcccagggagagagggagggagggagggagggagggagg
gagggagggagggagggaagagggtcttgtttgccttctggggaccagtg
gcttatgtatgttttgacgctccctcccttcctcccttccttctttccct
cccttactctctttccgcccgtcctccctcccttccttccctccctcagA
GCTACAGCGGCTCCGTCAGGAGTACATCAAAAGCGTCGCTCGAGCCCAAA
AAGCCTTCAAAGTGgtaatgccctccctccctccctcgctcgctccctcc
ctccctccctcccttcacagacctccttcttattcctgcaaggaaggagt
atgaaagcagatgctcaccttccctcgctccctccctcgctccctccctc
cctcgctccctcgctccctcgctccctcagCGGATGGAGTCCATGTTCAA
GTGCCGCGAGGATCGGGAGGACCTGCACTGGAGGCTCATCGAGCAGCACC
AGCGGACGATAGCCGATTACGATCGACGCTTGTGTCTCGCCACCGACGAC
CAGGCCAAGAAGgttagctccctccctccctcccctccttcctccctctc
cccctccttccctccccttttcccaatttatcgcctcctcaccccaatcc
ctccccttccttgtgttcctcctcccctccctccctccctccttttcgct
cagGTCCAAGACATGCGTCAGCATTTCATTGACGCCCGTCAAGCCCACCG
GGCCCTGGTCAGCCATAGCGGAGGAGGAGGAGGAGGAGGAAAGTGA
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protein sequence of NO01G00700.1

>NO01G00700.1-protein ID=NO01G00700.1-protein|Name=NO01G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MPRTASYDLLVSEQQQQQQQQQQQQQQQQQQQQQRRLHEQQEGEREDGKE
GRKEGGREGGIATVLPQSLDQLLLTDIDYRDDDYEEEDDADTELQRLRQE
YIKSVARAQKAFKVRMESMFKCREDREDLHWRLIEQHQRTIADYDRRLCL
ATDDQAKKVQDMRQHFIDARQAHRALVSHSGGGGGGGK*
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Synonyms
Publications