NO01G00700.1, NO01G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00700.1
Unique NameNO01G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length567
Alignment locationchr1:177685..178930 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:177685..178930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G00700.1 vs.
Match: EWM29003.1 (hypothetical protein Naga_101720g1 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 5.400e-32
Identity = 82/125 (65.60%), Postives = 103/125 (82.40%), Query Frame = 0 
Query:   37 LHEQQEGEREDGKEGRKEG--GREGGIATVLPQSLDQLLLTDIDYRDDDYEEEDDADTELQRLRQEYIKSVARAQKAFKVRMESMFKCREDREDLHWRLIEQHQRTIADYDRRLCLATDDQAKKV 160
            LH++Q+G  E G+EG+++G  GREG        SL++LLLTDIDY+D D+EEED AD ELQRLRQEYIKSV RAQKAFK RMESM+KCR+D+ED H +L+EQHQ+ +AD+DRRL LATDDQAK++
Sbjct:  190 LHQKQQGG-EGGEEGKEDGDKGREGPAT-----SLEKLLLTDIDYQDSDFEEEDSADQELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRL 308
The following BLAST results are available for this feature:
BLAST of NO01G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29003.15.400e-3265.60hypothetical protein Naga_101720g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00700NO01G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00700.1NO01G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00700.1.cds1NO01G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00700.1.cds2NO01G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00700.1.cds3NO01G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00700.1.cds4NO01G00700.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00700.1.cds5NO01G00700.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00700.1 ID=NO01G00700.1|Name=NO01G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
ATGCCACGCACGGCCTCCTATGACCTTCTCGTCAGCGAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAACAGC
AGCGGCGTTTGCACGAGCAGCAGGAGGGGGAAAGAGAGGACGGGAAGGAG
GGAAGGAAGGAAGGAGGGAGGGAGGGAGGGATTGCGACTGTCCTGCCTCA
GAGCTTGGACCAGCTGCTCTTGACGGATATAGACTACCGTGACGACGACT
ATGAGGAGGAGGATGATGCCGACACTGAGCTACAGCGGCTCCGTCAGGAG
TACATCAAAAGCGTCGCTCGAGCCCAAAAAGCCTTCAAAGTGCGGATGGA
GTCCATGTTCAAGTGCCGCGAGGATCGGGAGGACCTGCACTGGAGGCTCA
TCGAGCAGCACCAGCGGACGATAGCCGATTACGATCGACGCTTGTGTCTC
GCCACCGACGACCAGGCCAAGAAGGTCCAAGACATGCGTCAGCATTTCAT
TGACGCCCGTCAAGCCCACCGGGCCCTGGTCAGCCATAGCGGAGGAGGAG
GAGGAGGAGGAAAGTGA
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protein sequence of NO01G00700.1

>NO01G00700.1-protein ID=NO01G00700.1-protein|Name=NO01G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MPRTASYDLLVSEQQQQQQQQQQQQQQQQQQQQQRRLHEQQEGEREDGKE
GRKEGGREGGIATVLPQSLDQLLLTDIDYRDDDYEEEDDADTELQRLRQE
YIKSVARAQKAFKVRMESMFKCREDREDLHWRLIEQHQRTIADYDRRLCL
ATDDQAKKVQDMRQHFIDARQAHRALVSHSGGGGGGGK*
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mRNA from alignment at chr1:177685..178930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00700.1 ID=NO01G00700.1|Name=NO01G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp|location=Sequence derived from alignment at chr1:177685..178930+ (Nannochloropsis oceanica)
ATGCCACGCACGGCCTCCTATGACCTTCTCGTCAGCGAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAACAGC
AGCGGCGTTTGCACGAGCAGCAGGAGGGGGAAAGAGAGGACGGGAAGGAG
GGAAGGAAGGAAGGAGGGAGGGAGGGAGGGATTGCGACTGTCCTGCCTCA
GAGCTTGGACCAGCTGCTCTTGACGGATATAGGTACGTATGGAGGAAGGA
AGGAAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGAAT
GGATGTATTTTTGTGTCGCTTTTCGAACGATTTTTGGTTGCGCTCTGTCA
CCCCCGTCCCTTCTCTCACCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCGTCCAGACTACCGTGACGACGACTATGAGGAGGAGGATGATGCCGA
CACTGGTGAGTGCCCAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAAGAGGGTCTTGTTTGCCTTCTGGGGACCAGTG
GCTTATGTATGTTTTGACGCTCCCTCCCTTCCTCCCTTCCTTCTTTCCCT
CCCTTACTCTCTTTCCGCCCGTCCTCCCTCCCTTCCTTCCCTCCCTCAGA
GCTACAGCGGCTCCGTCAGGAGTACATCAAAAGCGTCGCTCGAGCCCAAA
AAGCCTTCAAAGTGGTAATGCCCTCCCTCCCTCCCTCGCTCGCTCCCTCC
CTCCCTCCCTCCCTTCACAGACCTCCTTCTTATTCCTGCAAGGAAGGAGT
ATGAAAGCAGATGCTCACCTTCCCTCGCTCCCTCCCTCGCTCCCTCCCTC
CCTCGCTCCCTCGCTCCCTCGCTCCCTCAGCGGATGGAGTCCATGTTCAA
GTGCCGCGAGGATCGGGAGGACCTGCACTGGAGGCTCATCGAGCAGCACC
AGCGGACGATAGCCGATTACGATCGACGCTTGTGTCTCGCCACCGACGAC
CAGGCCAAGAAGGTTAGCTCCCTCCCTCCCTCCCCTCCTTCCTCCCTCTC
CCCCTCCTTCCCTCCCCTTTTCCCAATTTATCGCCTCCTCACCCCAATCC
CTCCCCTTCCTTGTGTTCCTCCTCCCCTCCCTCCCTCCCTCCTTTTCGCT
CAGGTCCAAGACATGCGTCAGCATTTCATTGACGCCCGTCAAGCCCACCG
GGCCCTGGTCAGCCATAGCGGAGGAGGAGGAGGAGGAGGAAAGTGA
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Coding sequence (CDS) from alignment at chr1:177685..178930+

>NO01G00700.1 ID=NO01G00700.1|Name=NO01G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at chr1:177685..178930+ (Nannochloropsis oceanica)
ATGCCACGCACGGCCTCCTATGACCTTCTCGTCAGCGAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAACAGC
AGCGGCGTTTGCACGAGCAGCAGGAGGGGGAAAGAGAGGACGGGAAGGAG
GGAAGGAAGGAAGGAGGGAGGGAGGGAGGGATTGCGACTGTCCTGCCTCA
GAGCTTGGACCAGCTGCTCTTGACGGATATAGACTACCGTGACGACGACT
ATGAGGAGGAGGATGATGCCGACACTGAGCTACAGCGGCTCCGTCAGGAG
TACATCAAAAGCGTCGCTCGAGCCCAAAAAGCCTTCAAAGTGCGGATGGA
GTCCATGTTCAAGTGCCGCGAGGATCGGGAGGACCTGCACTGGAGGCTCA
TCGAGCAGCACCAGCGGACGATAGCCGATTACGATCGACGCTTGTGTCTC
GCCACCGACGACCAGGCCAAGAAGGTCCAAGACATGCGTCAGCATTTCAT
TGACGCCCGTCAAGCCCACCGGGCCCTGGTCAGCCATAGCGGAGGAGGAG
GAGGAGGAGGAAAGTGA
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Synonyms
Publications