NO01G00590, NO01G00590 (gene) Nannochloropsis oceanica

Overview
NameNO01G00590
Unique NameNO01G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr1:156502..157626 +

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Properties
Property NameValue
DescriptionArmadillo-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:156502..157626 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR019399Parkin_co-regulated_protein
Homology
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: OMJ77824.1 (hypothetical protein SteCoe_22491 [Stentor coeruleus])

HSP 1 Score: 150.2 bits (378), Expect = 1.300e-32
Identity = 83/214 (38.79%), Postives = 119/214 (55.61%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P+ F + YDRG +P ++ H                            ++ W      L+Y    P+F +GLRE  DPYRFLA+QGV D++E   +K+   IP L+ P+K AL+T  P I+   LKI Q  ++T  + IG ALVP+Y   L    VFN +K   ++ N   ++D+ QR+   + EL+ ETLELLE TGG +AF +I+YMIP+YES
Sbjct:  118 PSEFRRFYDRGDMPIAVSH------------------------GGTNKIVWKVAVDQLDYHHYLPIFFDGLREKTDPYRFLAIQGVFDMLEHGGNKVLPVIPQLIIPVKTALNTRDPDIICVILKILQK-LVTSADMIGEALVPYYRQIL---PVFNIFK--HKNANYGDKIDYSQRKHQNIGELIQETLELLETTGGEDAFINIKYMIPTYES 301
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: OMJ80091.1 (hypothetical protein SteCoe_19739 [Stentor coeruleus])

HSP 1 Score: 150.2 bits (378), Expect = 1.300e-32
Identity = 83/214 (38.79%), Postives = 119/214 (55.61%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P+ F + YDRG +P ++ H                            ++ W      L+Y    P+F +GLRE  DPYRFLA+QGV D++E   +K+   IP L+ P+K AL+T  P I+   LKI Q  ++T  + IG ALVP+Y   L    VFN +K   ++ N   ++D+ QR+   + EL+ ETLELLE TGG +AF +I+YMIP+YES
Sbjct:  118 PSEFRRFYDRGDMPIAVSH------------------------GGTNKIVWKVAVDQLDYHHYLPIFFDGLREKTDPYRFLAIQGVFDMLEHGGNKVLPVIPQLIIPVKTALNTRDPDIICVILKILQK-LVTSADMIGEALVPYYRQIL---PVFNIFK--HKNANYGDKIDYSQRKHQNIGELIQETLELLETTGGEDAFINIKYMIPTYES 301
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: OMJ94138.1 (hypothetical protein SteCoe_2776 [Stentor coeruleus])

HSP 1 Score: 150.2 bits (378), Expect = 1.300e-32
Identity = 85/217 (39.17%), Postives = 120/217 (55.30%), Query Frame = 0 
Query:  155 TSGPNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            T  P+ F + YDRG +P ++ H                            ++ W      L+Y    P+F +GLRE  DPYRFLA+QGV D++E   +K+   IP L+ P+K AL+T    I+   LKI Q  ++T  + IG ALVP+Y   L    VFN +K   R+ N   ++D+ QR+R  + EL+ ETLELLE TGG +AF +I+YMIP+YES
Sbjct:  115 TIPPSEFRRFYDRGDMPIAVSH------------------------GGTNKIVWKVAVDQLDYHHYLPIFFDGLREKSDPYRFLAIQGVFDMLEHGGNKVLPVIPQLIIPIKTALNTRDADIICVILKILQK-LVTCADMIGEALVPYYRQIL---PVFNIFK--QRNANYGDKIDYSQRKRQNIGELIQETLELLETTGGEDAFINIKYMIPTYES 301
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: XP_001565682.2 (conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] >CAM39177.2 conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904])

HSP 1 Score: 149.8 bits (377), Expect = 1.700e-32
Identity = 83/214 (38.79%), Postives = 118/214 (55.14%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P  F ++YDRG LP +I H   P                         + W      L+Y    P+F +G+RE  +PY FLA QG LDL+E    K+   IP L+ P+K AL+T  P I+  TL+I Q  ++++ + IG ALVP+Y   L    V N +K   + R++   MD+GQR R  V +LVNETL+LLE  GG +A+ +I+YM+P+YES
Sbjct:  216 PTEFRRSYDRGDLPIAICHGSRP------------------------TVDWKVEVEKLDYHHYLPIFFDGIRETEEPYMFLARQGCLDLLERGGPKILPTIPQLIIPIKTALNTRHPDIICATLRILQQLVVSN-DLIGEALVPYYRQIL---PVLNLFKSIHKRRSRSDAMDYGQRNRDDVGDLVNETLQLLEQHGGEDAYINIKYMVPTYES 401
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: XP_010699799.1 (hypothetical protein LPMP_252290 [Leishmania panamensis] >AIN99092.1 hypothetical protein LPMP_252290 [Leishmania panamensis])

HSP 1 Score: 149.8 bits (377), Expect = 1.700e-32
Identity = 83/214 (38.79%), Postives = 118/214 (55.14%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P  F ++YDRG LP +I H   P                         + W      L+Y    P+F +G+RE  +PY FLA QG LDL+E    K+   IP L+ P+K AL+T  P I+  TL+I Q  ++++ + IG ALVP+Y   L    V N +K   + R++   MD+GQR R  V +LVNETL+LLE  GG +A+ +I+YM+P+YES
Sbjct:  216 PTEFRRSYDRGDLPIAICHGSRP------------------------TVDWKVEVEKLDYHHYLPIFFDGIRETEEPYMFLARQGCLDLLERGGPKILPTIPQLIIPIKTALNTRHPDIICATLRILQQLVVSN-DLIGEALVPYYRQIL---PVLNLFKSIHKRRSRSDAMDYGQRNRDDVGDLVNETLQLLEQHGGEDAYINIKYMVPTYES 401
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: CCM16267.1 (hypothetical protein, conserved [Leishmania guyanensis])

HSP 1 Score: 149.8 bits (377), Expect = 1.700e-32
Identity = 83/214 (38.79%), Postives = 118/214 (55.14%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P  F ++YDRG LP +I H   P                         + W      L+Y    P+F +G+RE  +PY FLA QG LDL+E    K+   IP L+ P+K AL+T  P I+  TL+I Q  ++++ + IG ALVP+Y   L    V N +K   + R++   MD+GQR R  V +LVNETL+LLE  GG +A+ +I+YM+P+YES
Sbjct:  120 PTEFRRSYDRGDLPIAICHGSRP------------------------TVDWKVEVEKLDYHHYLPIFFDGIRETEEPYMFLARQGCLDLLERGGPKILPTIPQLIIPIKTALNTRHPDIICATLRILQQLVVSN-DLIGEALVPYYRQIL---PVLNLFKSIHKRRSRSDAMDYGQRNRDDVGDLVNETLQLLEQHGGEDAYINIKYMVPTYES 305
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: OMJ67044.1 (hypothetical protein SteCoe_35896 [Stentor coeruleus])

HSP 1 Score: 149.8 bits (377), Expect = 1.700e-32
Identity = 84/214 (39.25%), Postives = 119/214 (55.61%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P+ F + YDRG +P ++ H                            ++ W      L+Y    P+F +GLRE  DPYRFLA+QGV D++E   +K+   IP L+ P+K AL+T    I+   LKI Q  ++T  + IG ALVP+Y   L    VFN +K   R+ N   ++D+ QR+R  + EL+ ETLELLE TGG +AF +I+YMIP+YES
Sbjct:  118 PSEFRRFYDRGDMPIAVSH------------------------GGTNKIVWKVAVDQLDYHHYLPIFFDGLREKSDPYRFLAIQGVFDMLEHGGNKVLPVIPQLIIPIKTALNTRDADIICVILKILQK-LVTCADMIGEALVPYYRQIL---PVFNIFK--QRNANYGDKIDYSQRKRQNIGELIQETLELLETTGGEDAFINIKYMIPTYES 301
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: ORC89587.1 (ParcG domain containing protein [Trypanosoma theileri])

HSP 1 Score: 149.1 bits (375), Expect = 2.800e-32
Identity = 82/214 (38.32%), Postives = 118/214 (55.14%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P  F + YDRG LP ++ H   P                         + W      L+Y    P+F +G+RE  +PY FLA QG LDL++    K+   IP L+ P+K AL+T  P I+  TL+I Q  +++  E IG ALVP+Y   L    +FN +K   +SR +   +D+GQR+R  V +LV ETL+LLEI GG +A+ +I+YM+P+YES
Sbjct:  112 PTEFRRYYDRGDLPLAVSHGSRP------------------------TIDWKVDVERLDYHHYLPIFFDGIRETEEPYMFLARQGSLDLLKRGGAKILPTIPQLIIPIKTALNTRHPEIICATLRILQQLVVSG-ELIGEALVPYYRQIL---PMFNLFKNRHKSRARGDAVDFGQRKRDDVGDLVEETLQLLEIHGGDDAYINIKYMVPTYES 297
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: XP_004030170.1 (hypothetical protein IMG5_166540 [Ichthyophthirius multifiliis] >EGR28934.1 hypothetical protein IMG5_166540 [Ichthyophthirius multifiliis])

HSP 1 Score: 148.3 bits (373), Expect = 4.800e-32
Identity = 80/211 (37.91%), Postives = 116/211 (54.98%), Query Frame = 0 
Query:  161 FHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            F + YDRG LP  + H+                           ++ W   P  L+Y    P+F +GLRE  DPYRFLA+ G  DL+E   +K+   IP L+ P+K  L+T  P I+   LKI Q  +++  + IG ALVP+Y   L    +FN YK   ++ N    +D+GQR++L + +L+ ETLEL E TGG +AF +I+YM+P+YES
Sbjct:  133 FRRYYDRGDLPIKVDHQGSVN-----------------------KIIWKISPEQLDYHHYLPIFFDGLREKMDPYRFLAILGTYDLLEKGANKILPVIPQLIIPIKTGLNTRDPEIIGILLKILQKLVVSG-DMIGEALVPYYRQIL---PIFNLYK--NKNMNIGDFIDYGQRKKLTLGDLIQETLELFEQTGGEDAFINIKYMVPTYES 314
[Close]
BLAST of NO01G00590 vs. NCBI_GenBank
Match: CUG43665.1 (parkin co-regulated protein, putative [Bodo saltans])

HSP 1 Score: 148.3 bits (373), Expect = 4.800e-32
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0 
Query:  158 PNPFHQAYDRGTLPASIQHRREPXXXXXXXXXXXXXXXXXXXXXRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYES 372
            P  F + Y RG LP ++ H+                         +L + W      L+Y    P+F +G+RE  DPYRFLA+QG  DL+E    K+   IP L+ P+K AL+T  P ++  TLK+ Q  +++  + IG ALVP+Y   L    +FN +++  ++  +   +D+GQR R  + EL+ ET++L EI GG +AF +I+YM+P YES
Sbjct:   96 PTEFRRFYTRGDLPIAVSHK------------------------SKLAVDWKVEIEKLDYHHYLPIFFDGIREKEDPYRFLAIQGCYDLLEKGGAKILPTIPQLIIPIKTALNTRDPDVMCATLKVLQQLVVSG-DLIGEALVPYYRQIL---PMFNLFRLTHKAAGRGDGIDYGQRHRDDIGELIEETIQLFEIHGGEDAFINIKYMVPDYES 281
The following BLAST results are available for this feature:
BLAST of NO01G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OMJ77824.11.300e-3238.79hypothetical protein SteCoe_22491 [Stentor coerule... [more]
OMJ80091.11.300e-3238.79hypothetical protein SteCoe_19739 [Stentor coerule... [more]
OMJ94138.11.300e-3239.17hypothetical protein SteCoe_2776 [Stentor coeruleu... [more]
XP_001565682.21.700e-3238.79conserved hypothetical protein [Leishmania brazili... [more]
XP_010699799.11.700e-3238.79hypothetical protein LPMP_252290 [Leishmania panam... [more]
CCM16267.11.700e-3238.79hypothetical protein, conserved [Leishmania guyane... [more]
OMJ67044.11.700e-3239.25hypothetical protein SteCoe_35896 [Stentor coerule... [more]
ORC89587.12.800e-3238.32ParcG domain containing protein [Trypanosoma theil... [more]
XP_004030170.14.800e-3237.91hypothetical protein IMG5_166540 [Ichthyophthirius... [more]
CUG43665.14.800e-3235.51parkin co-regulated protein, putative [Bodo saltan... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL004nonsL004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR088ngnoR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008322NSK008322Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00590.1NO01G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100817g2gene1624Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00590.1NO01G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00590 ID=NO01G00590|Name=NO01G00590|organism=Nannochloropsis oceanica|type=gene|length=1125bp
ATGACCGTCGCGGCAAGTCTGTCAATTGAGGAGTTCTTGGCTTCCCATAT
TCGACAACGACCCTCCCCACAAACCCAGAAATCTTCGCATTTTGCACAAT
TATTTTCGACGTCCCTCCTCTACGATGGAAATGTCCACAACCGGTTCCAC
CTCCAAGCTGCCCCTCTCAAAGCCAACCAGCCCCCACCTCCACCCATCTC
CCAGAGAAAGCAAGGACGAACACAGCACCAGCATTCCCTCTCTACTGCCG
CTCCTTGCAAGAACAAGGGAATGTCGCCACCACTGTGTCCACTTCGTCCG
AGTGACGATAAGGGCACCTTGACCACTCGTCTTTCCCAGACGCGTCGTCG
CCTCGGCCTAGACCGCCCCTCCCCCATGCCCTCAATCCCCGCTTCCAGCA
CGACCGCAACCACCAAGAAGACAAGGCTAATAATGTCTGACTGGAATCTC
CATCGCAGCAGTACTTCTGGTCCAAACCCTTTCCACCAGGCGTACGATCG
TGGCACTCTCCCTGCCTCCATTCAGCACCGACGCGAGCCTGCCAGGAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAATAGT
ATACGCCGCCTCAGGCTTAAGTGGCACACGCCTCCCTCCAATCTTGAATA
CCGCAGCATCTTCCCTCTCTTCCTCGAGGGCCTGCGGGAGAACAGAGATC
CCTACCGTTTTCTGGCCGTGCAAGGCGTACTCGACTTGATGGAGGCCTGC
CCTCACAAACTCTTCGCTTGTATCCCTTTCCTCCTTTCCCCCCTCAAGCG
CGCCCTGGATACGCACCAACCTATCATTCTCGCCACGACCCTAAAAATTT
TCCAAGATTTCATTTTAACGGACCCAGAGAGGATCGGCCCGGCCCTCGTC
CCTTTCTATCACCACTTCCTGGGCGCCTCTGCCGTGTTCAACAAATACAA
GATACATACCCGGAGCAGAAACCAAAGGGGTGAAATGGACTGGGGGCAAC
GACGACGGCTGTGTGTGTCGGAGCTGGTGAACGAGACGTTGGAGTTGCTG
GAAATCACGGGGGGCAGGGAGGCGTTTGAGCATATCCGGTACATGATACC
TAGCTACGAGTCGGTCATGCAGTAG
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protein sequence of NO01G00590.1

>NO01G00590.1-protein ID=NO01G00590.1-protein|Name=NO01G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MTVAASLSIEEFLASHIRQRPSPQTQKSSHFAQLFSTSLLYDGNVHNRFH
LQAAPLKANQPPPPPISQRKQGRTQHQHSLSTAAPCKNKGMSPPLCPLRP
SDDKGTLTTRLSQTRRRLGLDRPSPMPSIPASSTTATTKKTRLIMSDWNL
HRSSTSGPNPFHQAYDRGTLPASIQHRREPARSSSSSSSSSSSSSSSRNS
IRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEAC
PHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALV
PFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELL
EITGGREAFEHIRYMIPSYESVMQ*
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Synonyms
Publications