NO01G00590.1, NO01G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00590.1
Unique NameNO01G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr1:156502..157626 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:156502..157626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00590.1 vs.
Match: EWM28989.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 228.4 bits (581), Expect = 3.700e-56
Identity = 110/171 (64.33%), Postives = 135/171 (78.95%), Query Frame = 0 
Query:  204 LRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELLEITGGREAFEHIRYMIPSYESVMQ 375
            LRL+W+  P+ L+YR + PLFLEGLRE +DPYR+LAV+G +DL+ +CP KL AC+PFLL PLKRALDT  P+ILAT+L + Q+FIL DP RIGPALVP YH  LGASAV NK       R  +GEM   Q RRLCV++L+NETL LLEITGGR+AF HIRYM+P+Y+SV+Q
Sbjct:   20 LRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDR--KGEMASSQ-RRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQ 187
The following BLAST results are available for this feature:
BLAST of NO01G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28989.13.700e-5664.33Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00590NO01G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00590.1NO01G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00590.1.cds1NO01G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00590.1 ID=NO01G00590.1|Name=NO01G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGACCGTCGCGGCAAGTCTGTCAATTGAGGAGTTCTTGGCTTCCCATAT
TCGACAACGACCCTCCCCACAAACCCAGAAATCTTCGCATTTTGCACAAT
TATTTTCGACGTCCCTCCTCTACGATGGAAATGTCCACAACCGGTTCCAC
CTCCAAGCTGCCCCTCTCAAAGCCAACCAGCCCCCACCTCCACCCATCTC
CCAGAGAAAGCAAGGACGAACACAGCACCAGCATTCCCTCTCTACTGCCG
CTCCTTGCAAGAACAAGGGAATGTCGCCACCACTGTGTCCACTTCGTCCG
AGTGACGATAAGGGCACCTTGACCACTCGTCTTTCCCAGACGCGTCGTCG
CCTCGGCCTAGACCGCCCCTCCCCCATGCCCTCAATCCCCGCTTCCAGCA
CGACCGCAACCACCAAGAAGACAAGGCTAATAATGTCTGACTGGAATCTC
CATCGCAGCAGTACTTCTGGTCCAAACCCTTTCCACCAGGCGTACGATCG
TGGCACTCTCCCTGCCTCCATTCAGCACCGACGCGAGCCTGCCAGGAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAATAGT
ATACGCCGCCTCAGGCTTAAGTGGCACACGCCTCCCTCCAATCTTGAATA
CCGCAGCATCTTCCCTCTCTTCCTCGAGGGCCTGCGGGAGAACAGAGATC
CCTACCGTTTTCTGGCCGTGCAAGGCGTACTCGACTTGATGGAGGCCTGC
CCTCACAAACTCTTCGCTTGTATCCCTTTCCTCCTTTCCCCCCTCAAGCG
CGCCCTGGATACGCACCAACCTATCATTCTCGCCACGACCCTAAAAATTT
TCCAAGATTTCATTTTAACGGACCCAGAGAGGATCGGCCCGGCCCTCGTC
CCTTTCTATCACCACTTCCTGGGCGCCTCTGCCGTGTTCAACAAATACAA
GATACATACCCGGAGCAGAAACCAAAGGGGTGAAATGGACTGGGGGCAAC
GACGACGGCTGTGTGTGTCGGAGCTGGTGAACGAGACGTTGGAGTTGCTG
GAAATCACGGGGGGCAGGGAGGCGTTTGAGCATATCCGGTACATGATACC
TAGCTACGAGTCGGTCATGCAGTAG
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protein sequence of NO01G00590.1

>NO01G00590.1-protein ID=NO01G00590.1-protein|Name=NO01G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MTVAASLSIEEFLASHIRQRPSPQTQKSSHFAQLFSTSLLYDGNVHNRFH
LQAAPLKANQPPPPPISQRKQGRTQHQHSLSTAAPCKNKGMSPPLCPLRP
SDDKGTLTTRLSQTRRRLGLDRPSPMPSIPASSTTATTKKTRLIMSDWNL
HRSSTSGPNPFHQAYDRGTLPASIQHRREPARSSSSSSSSSSSSSSSRNS
IRRLRLKWHTPPSNLEYRSIFPLFLEGLRENRDPYRFLAVQGVLDLMEAC
PHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIGPALV
PFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNETLELL
EITGGREAFEHIRYMIPSYESVMQ*
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mRNA from alignment at chr1:156502..157626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00590.1 ID=NO01G00590.1|Name=NO01G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp|location=Sequence derived from alignment at chr1:156502..157626+ (Nannochloropsis oceanica)
ATGACCGTCGCGGCAAGTCTGTCAATTGAGGAGTTCTTGGCTTCCCATAT
TCGACAACGACCCTCCCCACAAACCCAGAAATCTTCGCATTTTGCACAAT
TATTTTCGACGTCCCTCCTCTACGATGGAAATGTCCACAACCGGTTCCAC
CTCCAAGCTGCCCCTCTCAAAGCCAACCAGCCCCCACCTCCACCCATCTC
CCAGAGAAAGCAAGGACGAACACAGCACCAGCATTCCCTCTCTACTGCCG
CTCCTTGCAAGAACAAGGGAATGTCGCCACCACTGTGTCCACTTCGTCCG
AGTGACGATAAGGGCACCTTGACCACTCGTCTTTCCCAGACGCGTCGTCG
CCTCGGCCTAGACCGCCCCTCCCCCATGCCCTCAATCCCCGCTTCCAGCA
CGACCGCAACCACCAAGAAGACAAGGCTAATAATGTCTGACTGGAATCTC
CATCGCAGCAGTACTTCTGGTCCAAACCCTTTCCACCAGGCGTACGATCG
TGGCACTCTCCCTGCCTCCATTCAGCACCGACGCGAGCCTGCCAGGAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAATAGT
ATACGCCGCCTCAGGCTTAAGTGGCACACGCCTCCCTCCAATCTTGAATA
CCGCAGCATCTTCCCTCTCTTCCTCGAGGGCCTGCGGGAGAACAGAGATC
CCTACCGTTTTCTGGCCGTGCAAGGCGTACTCGACTTGATGGAGGCCTGC
CCTCACAAACTCTTCGCTTGTATCCCTTTCCTCCTTTCCCCCCTCAAGCG
CGCCCTGGATACGCACCAACCTATCATTCTCGCCACGACCCTAAAAATTT
TCCAAGATTTCATTTTAACGGACCCAGAGAGGATCGGCCCGGCCCTCGTC
CCTTTCTATCACCACTTCCTGGGCGCCTCTGCCGTGTTCAACAAATACAA
GATACATACCCGGAGCAGAAACCAAAGGGGTGAAATGGACTGGGGGCAAC
GACGACGGCTGTGTGTGTCGGAGCTGGTGAACGAGACGTTGGAGTTGCTG
GAAATCACGGGGGGCAGGGAGGCGTTTGAGCATATCCGGTACATGATACC
TAGCTACGAGTCGGTCATGCAGTAG
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Coding sequence (CDS) from alignment at chr1:156502..157626+

>NO01G00590.1 ID=NO01G00590.1|Name=NO01G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr1:156502..157626+ (Nannochloropsis oceanica)
ATGACCGTCGCGGCAAGTCTGTCAATTGAGGAGTTCTTGGCTTCCCATAT
TCGACAACGACCCTCCCCACAAACCCAGAAATCTTCGCATTTTGCACAAT
TATTTTCGACGTCCCTCCTCTACGATGGAAATGTCCACAACCGGTTCCAC
CTCCAAGCTGCCCCTCTCAAAGCCAACCAGCCCCCACCTCCACCCATCTC
CCAGAGAAAGCAAGGACGAACACAGCACCAGCATTCCCTCTCTACTGCCG
CTCCTTGCAAGAACAAGGGAATGTCGCCACCACTGTGTCCACTTCGTCCG
AGTGACGATAAGGGCACCTTGACCACTCGTCTTTCCCAGACGCGTCGTCG
CCTCGGCCTAGACCGCCCCTCCCCCATGCCCTCAATCCCCGCTTCCAGCA
CGACCGCAACCACCAAGAAGACAAGGCTAATAATGTCTGACTGGAATCTC
CATCGCAGCAGTACTTCTGGTCCAAACCCTTTCCACCAGGCGTACGATCG
TGGCACTCTCCCTGCCTCCATTCAGCACCGACGCGAGCCTGCCAGGAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAATAGT
ATACGCCGCCTCAGGCTTAAGTGGCACACGCCTCCCTCCAATCTTGAATA
CCGCAGCATCTTCCCTCTCTTCCTCGAGGGCCTGCGGGAGAACAGAGATC
CCTACCGTTTTCTGGCCGTGCAAGGCGTACTCGACTTGATGGAGGCCTGC
CCTCACAAACTCTTCGCTTGTATCCCTTTCCTCCTTTCCCCCCTCAAGCG
CGCCCTGGATACGCACCAACCTATCATTCTCGCCACGACCCTAAAAATTT
TCCAAGATTTCATTTTAACGGACCCAGAGAGGATCGGCCCGGCCCTCGTC
CCTTTCTATCACCACTTCCTGGGCGCCTCTGCCGTGTTCAACAAATACAA
GATACATACCCGGAGCAGAAACCAAAGGGGTGAAATGGACTGGGGGCAAC
GACGACGGCTGTGTGTGTCGGAGCTGGTGAACGAGACGTTGGAGTTGCTG
GAAATCACGGGGGGCAGGGAGGCGTTTGAGCATATCCGGTACATGATACC
TAGCTACGAGTCGGTCATGCAGTAG
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Synonyms
Publications