NO01G00530, NO01G00530 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GBG33448.1 (Hypothetical Protein FCC1311_096712 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 100.9 bits (250), Expect = 1.000e-17 Identity = 86/343 (25.07%), Postives = 126/343 (36.73%), Query Frame = 0
Query: 61 LPTLEHFFRPVLVPGEH-AKGIECWYNNARFQTFLRKEYLQRVAAAEATVGLAVGGGKEAGQKPQVADASAPPAPTQSIHPPWGMDIISDKDGLKATRLPTYQELVDFFLLHDWNRRPGPHSAAFEGAKRQALLRTLQEKGPDVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKALSRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWG 403
L TLE PVL PG A + N RF++++R YL+ + G P + A+ + H + +PT +E+ + F W+R H E A ++ L++ + + W L ILE G CV G FNVYCE ++ TK+Y++AL +L KR + VE S+ AL+ + IV+C+WMP+GEDWT++MR+ +QEYILIGE + CG P KTWG
Sbjct: 53 LATLEKIVLPVLQPGSRDAVDLHEVETNIRFRSWVRNAYLE----------------QRFGNSPALRQAT-----QRFFH--------------QLPAVPTLREMDEIFGTGSWDR----HPEESEDALQRKLVKAYETDPQSCAHWDLETILEAIGCCVAGMNEFNVYCERHFVYEFLTKDYINALWRHLQKRCDKVHAETGKTEITILELGAGTGQLTWLLERAFNKSRMSKSAQKARSYTCKFVATDTGTWSTRHQRGAVQELQN-------VERASYTSALASF-SPDIVLCSWMPLGEDWTQAMRE-----TSSVQEYILIGE-TDDGCCGHPWKTWG 342
BLAST of NO01G00530 vs. NCBI_GenBank
Match: XP_002181730.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46944.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 89.4 bits (220), Expect = 3.100e-14 Identity = 102/436 (23.39%), Postives = 151/436 (34.63%), Query Frame = 0
Query: 46 AYPLLRRSLRRHCPTLPTLEHFFRPVLVPGEHAKGIECWYNNARFQTFLRKEYLQRVAAAEATVGLAVGGGKEAGQKP---QVADASAPPAPTQSIHPPWGMDIISDKDGLKATRLPTYQELVDFFLLHDW--NRRPGPHSAAFEGAKRQALLRTLQEKG-----------PDVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKALSRY-----PEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWGAGASLGGV---------------------------RPWEADGFSAHEEEGLGQWQWSR 434
A PL+ +R + LE + RPVL + W + RF + R EYL A AV G + QK QV S + + MD SD++ + + LP L + W + SA + + + L+ +G D+S+ +L +ILEL G V G FN CEE + +WT+EYV+ L +YL KR + VE +S ++ L + + IV+C+WMP+ EDWT R R + EYILIGE+ ++ CGD +TWG + P +ADG+ HE L +Q+SR
Sbjct: 90 ATPLVDAEIR-----VKVLERYLRPVLCRNNRWSEVRRWQFHPRFLKWARAEYL---LARHGDHLQAVMGAFPSLQKTLQLQVRQRSFQKLLSGKL----TMD--SDQEVVDPSTLPKSSLLTKVLEMESWTGQKDTSATSARMKQIAERVGGQVLELRGGGLRFATVSQEADLSALSLQEILELAGGHVANCGPFNTLCEEADIYQLWTEEYVEGLGSYLRKRTEQYHGDTLVLDVGAGDGLLAKYLRDYFEKEFTSRKTPARQRKVVPRPRRGLPSPKTPTIIATDDGSWRVSEKAP------VERMSVEETLDKLIQSDKAQQVIVLCSWMPLSEDWTTLFRS------RNVGEYILIGEY-DEGQCGDNWETWGNPRFRSSIDEEWEGLVQQDEIENEQFQIRPADTPKAPHQADGYKRHELRSLRPYQFSR 498
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GBG24724.1 (Hypothetical Protein FCC1311_009422 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 89.0 bits (219), Expect = 4.000e-14 Identity = 73/288 (25.35%), Postives = 110/288 (38.19%), Query Frame = 0
Query: 158 LPTYQELVDFFLLHDWNRRPGPHSAAFEGAK-----RQALLRTLQEKGP--DVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKALSRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWGAG-----ASLGGVRPWEADGFSAHEEEGLGQWQWSR 434
LP+ Q+L++ F L +RP P + G K +Q L+R P V W+L D LE G V GRG FN+ EETG ++ +T+EY+++LA Y+ +R ++ L+ +ALS+Y IV+CAWMPM DW+ R+ +QEY+L+GE + CG TWG P+ A+G+S + + +WQ R
Sbjct: 340 LPSRQDLIELFGL----QRPAPENWQRAGPKDHLKRKQDLMRQALAAQPPGSVQGWSLEDKLEALGCAVWGRGAFNLVAEETGRYEFYTREYIESLARYVHERLEALGAARGGASGDLVEVGAGSGSLTFFLNAALEKLGSKHRCLATDPDLRPAPRQRAGPSGESGSYT--------------IDPLNVSQALSKY-SPVIVLCAWMPMDTDWSSEFRKCS-----SVQEYVLVGE-ADFGACGHNWLTWGNAEFREEGKHESTAPFLAEGWSRVDLPDISRWQMQR 602
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GAX23730.1 (hypothetical protein FisN_12Hh307 [Fistulifera solaris]) HSP 1 Score: 86.3 bits (212), Expect = 2.600e-13 Identity = 70/264 (26.52%), Postives = 104/264 (39.39%), Query Frame = 0
Query: 158 LPTYQELVDFFLLHDWN-RRPGPHSAAFEGAKRQALL-RTLQEKG--------PD----VSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKAL-----SRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWG 403
LPT +++D F +HDW + + R+ L RTLQ +G PD V+ +L D+LE+ G V+ G +N +CE + +WT+EYV+ L YL +R + +VE LS ++AL + + IV+C+WMPMGEDWT+ R+ + +QEYILIGE + CGD +TWG
Sbjct: 148 LPTTDQVLDAFGMHDWALHKTNQRFHVMDRIVREKLNGRTLQLRGGGVITAIVPDSNQSVADVSLEDLLEVSGGFVKMNGPWNTFCELHDIYQLWTQEYVNRLGDYLRQRVQS---------------------FAGETIVLDVGAGDGLLTKALEEYFAQQPRRSNHRKFRAPRIIATDDGSWKISPKAWVEGLSVEEALHFHASDCHSKQVIVLCSWMPMGEDWTKLFRE------KNVQEYILIGE-ADDGQCGDNWETWG 383
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GAX14996.1 (hypothetical protein FisN_12Lh307 [Fistulifera solaris]) HSP 1 Score: 85.9 bits (211), Expect = 3.400e-13 Identity = 86/358 (24.02%), Postives = 128/358 (35.75%), Query Frame = 0
Query: 64 LEHFFRPVLVPGEHAKGIECWYNNARFQTFLRKEYLQRVAAAEATVGLAVGGGKEAGQKPQVADASAPPAPTQSIHPPWGMDIISDKDGLKATRLPTYQELVDFFLLHDW--NRRPGPHSAAFEGAKRQALLRTLQEKG--------PD----VSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKAL-----SRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWG 403
LE F R LVP E + W + R + + R E+LQ A G KE+ + LPT +++D F + DW ++ + + Q RTL+ +G PD V+ +L D+LE+ G V+ G +N +CE + +WT+EYVD L YL +R + +VE LS ++AL + + IV+C+WMPMGEDWT+ R+ + +QEYILIGE + CGD +TWG
Sbjct: 98 LESFIRSSLVPNEVWSDVFKWQYHHRLRKWCRMEFLQ------AKYGTRFDLKKES----------------------------------RRNNLPTTDQVLDAFDMRDWALHKTSQRFHVMDQIVREQLNGRTLRLRGGGVVTAIVPDSNQSVADVSLEDLLEVTGGFVKTCGPWNTFCELHDIYQLWTQEYVDRLGDYLRQRVQ---------------------TFAGETIVLDVGAGDGLLTEALEEYFAQQPRRSNHRKFRAPRIIATDDGSWKISPKAWVESLSVEEALHIHASDCHSKQVIVLCSWMPMGEDWTKLFRE------KYVQEYILIGE-ADDGQCGDNWETWG 387 The following BLAST results are available for this feature:
BLAST of NO01G00530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G00530 ID=NO01G00530|Name=NO01G00530|organism=Nannochloropsis oceanica|type=gene|length=1629bpback to top protein sequence of NO01G00530.1 >NO01G00530.1-protein ID=NO01G00530.1-protein|Name=NO01G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bpback to top Synonyms
Publications
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