NO01G00530, NO01G00530 (gene) Nannochloropsis oceanica

Overview
NameNO01G00530
Unique NameNO01G00530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1629
Alignment locationchr1:141395..143023 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:141395..143023 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Homology
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GBG33448.1 (Hypothetical Protein FCC1311_096712 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 100.9 bits (250), Expect = 1.000e-17
Identity = 86/343 (25.07%), Postives = 126/343 (36.73%), Query Frame = 0
Query:   61 LPTLEHFFRPVLVPGEH-AKGIECWYNNARFQTFLRKEYLQRVAAAEATVGLAVGGGKEAGQKPQVADASAPPAPTQSIHPPWGMDIISDKDGLKATRLPTYQELVDFFLLHDWNRRPGPHSAAFEGAKRQALLRTLQEKGPDVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKALSRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWG 403
            L TLE    PVL PG   A  +     N RF++++R  YL+                +  G  P +  A+      +  H              +   +PT +E+ + F    W+R    H    E A ++ L++  +      + W L  ILE  G CV G   FNVYCE    ++  TK+Y++AL  +L KR  +                                                                              VE  S+  AL+ +    IV+C+WMP+GEDWT++MR+        +QEYILIGE  +   CG P KTWG
Sbjct:   53 LATLEKIVLPVLQPGSRDAVDLHEVETNIRFRSWVRNAYLE----------------QRFGNSPALRQAT-----QRFFH--------------QLPAVPTLREMDEIFGTGSWDR----HPEESEDALQRKLVKAYETDPQSCAHWDLETILEAIGCCVAGMNEFNVYCERHFVYEFLTKDYINALWRHLQKRCDKVHAETGKTEITILELGAGTGQLTWLLERAFNKSRMSKSAQKARSYTCKFVATDTGTWSTRHQRGAVQELQN-------VERASYTSALASF-SPDIVLCSWMPLGEDWTQAMRE-----TSSVQEYILIGE-TDDGCCGHPWKTWG 342          
BLAST of NO01G00530 vs. NCBI_GenBank
Match: XP_002181730.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46944.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.4 bits (220), Expect = 3.100e-14
Identity = 102/436 (23.39%), Postives = 151/436 (34.63%), Query Frame = 0
Query:   46 AYPLLRRSLRRHCPTLPTLEHFFRPVLVPGEHAKGIECWYNNARFQTFLRKEYLQRVAAAEATVGLAVGGGKEAGQKP---QVADASAPPAPTQSIHPPWGMDIISDKDGLKATRLPTYQELVDFFLLHDW--NRRPGPHSAAFEGAKRQALLRTLQEKG-----------PDVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKALSRY-----PEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWGAGASLGGV---------------------------RPWEADGFSAHEEEGLGQWQWSR 434
            A PL+   +R     +  LE + RPVL        +  W  + RF  + R EYL    A       AV G   + QK    QV   S     +  +     MD  SD++ +  + LP    L     +  W   +     SA  +    +   + L+ +G            D+S+ +L +ILEL G  V   G FN  CEE   + +WT+EYV+ L +YL KR  +                                                                              VE +S ++ L +       +  IV+C+WMP+ EDWT   R       R + EYILIGE+ ++  CGD  +TWG       +                            P +ADG+  HE   L  +Q+SR
Sbjct:   90 ATPLVDAEIR-----VKVLERYLRPVLCRNNRWSEVRRWQFHPRFLKWARAEYL---LARHGDHLQAVMGAFPSLQKTLQLQVRQRSFQKLLSGKL----TMD--SDQEVVDPSTLPKSSLLTKVLEMESWTGQKDTSATSARMKQIAERVGGQVLELRGGGLRFATVSQEADLSALSLQEILELAGGHVANCGPFNTLCEEADIYQLWTEEYVEGLGSYLRKRTEQYHGDTLVLDVGAGDGLLAKYLRDYFEKEFTSRKTPARQRKVVPRPRRGLPSPKTPTIIATDDGSWRVSEKAP------VERMSVEETLDKLIQSDKAQQVIVLCSWMPLSEDWTTLFRS------RNVGEYILIGEY-DEGQCGDNWETWGNPRFRSSIDEEWEGLVQQDEIENEQFQIRPADTPKAPHQADGYKRHELRSLRPYQFSR 498          
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GBG24724.1 (Hypothetical Protein FCC1311_009422 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 89.0 bits (219), Expect = 4.000e-14
Identity = 73/288 (25.35%), Postives = 110/288 (38.19%), Query Frame = 0
Query:  158 LPTYQELVDFFLLHDWNRRPGPHSAAFEGAK-----RQALLRTLQEKGP--DVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKALSRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWGAG-----ASLGGVRPWEADGFSAHEEEGLGQWQWSR 434
            LP+ Q+L++ F L    +RP P +    G K     +Q L+R      P   V  W+L D LE  G  V GRG FN+  EETG ++ +T+EY+++LA Y+ +R                                                                                 ++ L+  +ALS+Y    IV+CAWMPM  DW+   R+        +QEY+L+GE  +   CG    TWG              P+ A+G+S  +   + +WQ  R
Sbjct:  340 LPSRQDLIELFGL----QRPAPENWQRAGPKDHLKRKQDLMRQALAAQPPGSVQGWSLEDKLEALGCAVWGRGAFNLVAEETGRYEFYTREYIESLARYVHERLEALGAARGGASGDLVEVGAGSGSLTFFLNAALEKLGSKHRCLATDPDLRPAPRQRAGPSGESGSYT--------------IDPLNVSQALSKY-SPVIVLCAWMPMDTDWSSEFRKCS-----SVQEYVLVGE-ADFGACGHNWLTWGNAEFREEGKHESTAPFLAEGWSRVDLPDISRWQMQR 602          
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GAX23730.1 (hypothetical protein FisN_12Hh307 [Fistulifera solaris])

HSP 1 Score: 86.3 bits (212), Expect = 2.600e-13
Identity = 70/264 (26.52%), Postives = 104/264 (39.39%), Query Frame = 0
Query:  158 LPTYQELVDFFLLHDWN-RRPGPHSAAFEGAKRQALL-RTLQEKG--------PD----VSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKAL-----SRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWG 403
            LPT  +++D F +HDW   +        +   R+ L  RTLQ +G        PD    V+  +L D+LE+ G  V+  G +N +CE    + +WT+EYV+ L  YL +R +                                                                              +VE LS ++AL       + +  IV+C+WMPMGEDWT+  R+      + +QEYILIGE  +   CGD  +TWG
Sbjct:  148 LPTTDQVLDAFGMHDWALHKTNQRFHVMDRIVREKLNGRTLQLRGGGVITAIVPDSNQSVADVSLEDLLEVSGGFVKMNGPWNTFCELHDIYQLWTQEYVNRLGDYLRQRVQS---------------------FAGETIVLDVGAGDGLLTKALEEYFAQQPRRSNHRKFRAPRIIATDDGSWKISPKAWVEGLSVEEALHFHASDCHSKQVIVLCSWMPMGEDWTKLFRE------KNVQEYILIGE-ADDGQCGDNWETWG 383          
BLAST of NO01G00530 vs. NCBI_GenBank
Match: GAX14996.1 (hypothetical protein FisN_12Lh307 [Fistulifera solaris])

HSP 1 Score: 85.9 bits (211), Expect = 3.400e-13
Identity = 86/358 (24.02%), Postives = 128/358 (35.75%), Query Frame = 0
Query:   64 LEHFFRPVLVPGEHAKGIECWYNNARFQTFLRKEYLQRVAAAEATVGLAVGGGKEAGQKPQVADASAPPAPTQSIHPPWGMDIISDKDGLKATRLPTYQELVDFFLLHDW--NRRPGPHSAAFEGAKRQALLRTLQEKG--------PD----VSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFVEELSWDKAL-----SRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWG 403
            LE F R  LVP E    +  W  + R + + R E+LQ      A  G      KE+                                  +   LPT  +++D F + DW  ++         +  + Q   RTL+ +G        PD    V+  +L D+LE+ G  V+  G +N +CE    + +WT+EYVD L  YL +R +                                                                              +VE LS ++AL       + +  IV+C+WMPMGEDWT+  R+      + +QEYILIGE  +   CGD  +TWG
Sbjct:   98 LESFIRSSLVPNEVWSDVFKWQYHHRLRKWCRMEFLQ------AKYGTRFDLKKES----------------------------------RRNNLPTTDQVLDAFDMRDWALHKTSQRFHVMDQIVREQLNGRTLRLRGGGVVTAIVPDSNQSVADVSLEDLLEVTGGFVKTCGPWNTFCELHDIYQLWTQEYVDRLGDYLRQRVQ---------------------TFAGETIVLDVGAGDGLLTEALEEYFAQQPRRSNHRKFRAPRIIATDDGSWKISPKAWVESLSVEEALHIHASDCHSKQVIVLCSWMPMGEDWTKLFRE------KYVQEYILIGE-ADDGQCGDNWETWG 387          
The following BLAST results are available for this feature:
BLAST of NO01G00530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
GBG33448.11.000e-1725.07Hypothetical Protein FCC1311_096712 [Aurantiochytr... [more]
XP_002181730.13.100e-1423.39predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GBG24724.14.000e-1425.35Hypothetical Protein FCC1311_009422 [Aurantiochytr... [more]
GAX23730.12.600e-1326.52hypothetical protein FisN_12Hh307 [Fistulifera sol... [more]
GAX14996.13.400e-1324.02hypothetical protein FisN_12Lh307 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00530.1NO01G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636458gene_29Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00530.1NO01G00530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00530 ID=NO01G00530|Name=NO01G00530|organism=Nannochloropsis oceanica|type=gene|length=1629bp
ATGTCTCCTCCACTCCGCCCGCCAGCCTCCTCCCTCCCCGCCTCGCTTCG
TCTCCAACAACTTATTATCAAGTACCTCATCAAGTCGAGTGATCCCTACC
GGCAAGAATTATTGGGTCAAACCCTCGGTGCTCTAGCCTATCCCTTGCTC
CGTCGATCTCTCCGTCGCCACTGTCCGACCCTTCCTACCCTCGAACACTT
TTTTAGGCCCGTCCTCGTGCCGGGAGAGCATGCCAAGGGCATTGAATGCT
GGTACAATAATGCACGATTTCAGACGTTTCTTCGGAAAGAATATTTGCAA
CGCGTGGCCGCTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAA
GGAGGCGGGTCAAAAGCCACAAGTAGCAGACGCATCAGCACCACCCGCAC
CAACACAATCAATCCATCCGCCCTGGGGCATGGATATCATATCCGACAAG
GATGGATTGAAAGCAACTCGCCTCCCGACCTATCAAGAACTCGTCGACTT
TTTCCTCCTTCATGATTGGAACCGTCGCCCTGGACCCCACAGCGCCGCAT
TTGAAGGAGCGAAGCGTCAAGCCCTCCTCCGCACACTTCAGGAGAAAGGC
CCGGATGTATCTTCATGGACACTCAATGACATCTTGGAACTGGGCGGGGC
ATGCGTGGAGGGACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTGGCT
CGTGGGATGTGTGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTATCTC
ACGAAACGTGCCCGCGAGCTCGCGTCCTCCCTCCCTTCCTCCTTCCCTTC
CTCCCTCCCCTCCTCCCCTCTTTCTCTCCCTCTTCTCGTCTTGGAAGTCG
GGGCTGGCACGGGTGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCCC
TCCCTGGTCACCTACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCCT
GCCTCCCTCCAGCCCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCT
TTGTGGAGGAGCTTTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGCG
GCTATCGTCGTTTGTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAAG
CATGAGGCAAGGGGGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATCT
TGATCGGAGAGCACGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGACG
TGGGGGGCCGgtgggttgggggatggatggagtgagggaaggagggggtg
cagggcttattttatgtgaaaaggagatttgcatgtcttcacatccaatc
agtgtattcataattcatttgtcctccctcactcccttcctccgacccag
GTGCGTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCGATGGCTTTAGTGCC
CACGAAGAAGAGGGGCTGGGTCAATGGCAGTGGTCACGgtatgatgggaa
acaattcgctcggaactccgccacaatctgctttcgacgagggggtagtg
gagggagagagggagggagagagggagagaggaggggtgggaggggggga
gggaggaatgcatataggtaggcagtttgaggttgtcttaagaacgaatt
acgtactacactacaacagGAAAAAATAA
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protein sequence of NO01G00530.1

>NO01G00530.1-protein ID=NO01G00530.1-protein|Name=NO01G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MSPPLRPPASSLPASLRLQQLIIKYLIKSSDPYRQELLGQTLGALAYPLL
RRSLRRHCPTLPTLEHFFRPVLVPGEHAKGIECWYNNARFQTFLRKEYLQ
RVAAAEATVGLAVGGGKEAGQKPQVADASAPPAPTQSIHPPWGMDIISDK
DGLKATRLPTYQELVDFFLLHDWNRRPGPHSAAFEGAKRQALLRTLQEKG
PDVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYL
TKRARELASSLPSSFPSSLPSSPLSLPLLVLEVGAGTGALAYHLKQRLDP
SLVTYIATDREPSPVPLPPSSPPSLLPSLLAHPFVEELSWDKALSRYPEA
AIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKT
WGAGASLGGVRPWEADGFSAHEEEGLGQWQWSRKK*
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Synonyms
Publications