NO01G00530.1, NO01G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00530.1
Unique NameNO01G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1308
Alignment locationchr1:141395..143023 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:141395..143023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00530.1 vs.
Match: GBG24724.1 (Hypothetical Protein FCC1311_009422 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 124.4 bits (311), Expect = 8.600e-25
Identity = 92/290 (31.72%), Postives = 139/290 (47.93%), Query Frame = 0 
Query:  158 LPTYQELVDFFLLHDWNRRPGPHSAAFEGAK-----RQALLRTLQEKGP--DVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKRARELASSLPSSFPSSLPSSPLSLPLLVLEVGAGTGALAYHLKQRLDP--SLVTYIATDREPSPVPLPPSSPPSLLPSLLAHPFVEELSWDKALSRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKTWGAG-----ASLGGVRPWEADGFSAHEEEGLGQWQWSR 434
            LP+ Q+L++ F L    +RP P +    G K     +Q L+R      P   V  W+L D LE  G  V GRG FN+  EETG ++ +T+EY+++LA Y+ +R   L ++   +               ++EVGAG+G+L + L   L+   S    +ATD +  P P   + P     S    P    L+  +ALS+Y    IV+CAWMPM  DW+   R+        +QEY+L+GE  +   CG    TWG              P+ A+G+S  +   + +WQ  R
Sbjct:  340 LPSRQDLIELFGL----QRPAPENWQRAGPKDHLKRKQDLMRQALAAQPPGSVQGWSLEDKLEALGCAVWGRGAFNLVAEETGRYEFYTREYIESLARYVHERLEALGAARGGASGD------------LVEVGAGSGSLTFFLNAALEKLGSKHRCLATDPDLRPAPRQRAGPSGESGSYTIDP----LNVSQALSKY-SPVIVLCAWMPMDTDWSSEFRKCS-----SVQEYVLVGE-ADFGACGHNWLTWGNAEFREEGKHESTAPFLAEGWSRVDLPDISRWQMQR 602
The following BLAST results are available for this feature:
BLAST of NO01G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GBG24724.18.600e-2531.72Hypothetical Protein FCC1311_009422 [Aurantiochytr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00530NO01G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00530.1NO01G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00530.1.cds1NO01G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00530.1.cds2NO01G00530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00530.1.cds3NO01G00530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00530.1 ID=NO01G00530.1|Name=NO01G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
ATGTCTCCTCCACTCCGCCCGCCAGCCTCCTCCCTCCCCGCCTCGCTTCG
TCTCCAACAACTTATTATCAAGTACCTCATCAAGTCGAGTGATCCCTACC
GGCAAGAATTATTGGGTCAAACCCTCGGTGCTCTAGCCTATCCCTTGCTC
CGTCGATCTCTCCGTCGCCACTGTCCGACCCTTCCTACCCTCGAACACTT
TTTTAGGCCCGTCCTCGTGCCGGGAGAGCATGCCAAGGGCATTGAATGCT
GGTACAATAATGCACGATTTCAGACGTTTCTTCGGAAAGAATATTTGCAA
CGCGTGGCCGCTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAA
GGAGGCGGGTCAAAAGCCACAAGTAGCAGACGCATCAGCACCACCCGCAC
CAACACAATCAATCCATCCGCCCTGGGGCATGGATATCATATCCGACAAG
GATGGATTGAAAGCAACTCGCCTCCCGACCTATCAAGAACTCGTCGACTT
TTTCCTCCTTCATGATTGGAACCGTCGCCCTGGACCCCACAGCGCCGCAT
TTGAAGGAGCGAAGCGTCAAGCCCTCCTCCGCACACTTCAGGAGAAAGGC
CCGGATGTATCTTCATGGACACTCAATGACATCTTGGAACTGGGCGGGGC
ATGCGTGGAGGGACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTGGCT
CGTGGGATGTGTGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTATCTC
ACGAAACGTGCCCGCGAGCTCGCGTCCTCCCTCCCTTCCTCCTTCCCTTC
CTCCCTCCCCTCCTCCCCTCTTTCTCTCCCTCTTCTCGTCTTGGAAGTCG
GGGCTGGCACGGGTGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCCC
TCCCTGGTCACCTACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCCT
GCCTCCCTCCAGCCCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCT
TTGTGGAGGAGCTTTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGCG
GCTATCGTCGTTTGTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAAG
CATGAGGCAAGGGGGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATCT
TGATCGGAGAGCACGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGACG
TGGGGGGCCGGTGCGTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCGATGG
CTTTAGTGCCCACGAAGAAGAGGGGCTGGGTCAATGGCAGTGGTCACGGA
AAAAATAA
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protein sequence of NO01G00530.1

>NO01G00530.1-protein ID=NO01G00530.1-protein|Name=NO01G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MSPPLRPPASSLPASLRLQQLIIKYLIKSSDPYRQELLGQTLGALAYPLL
RRSLRRHCPTLPTLEHFFRPVLVPGEHAKGIECWYNNARFQTFLRKEYLQ
RVAAAEATVGLAVGGGKEAGQKPQVADASAPPAPTQSIHPPWGMDIISDK
DGLKATRLPTYQELVDFFLLHDWNRRPGPHSAAFEGAKRQALLRTLQEKG
PDVSSWTLNDILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYL
TKRARELASSLPSSFPSSLPSSPLSLPLLVLEVGAGTGALAYHLKQRLDP
SLVTYIATDREPSPVPLPPSSPPSLLPSLLAHPFVEELSWDKALSRYPEA
AIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYILIGEHGEQAGCGDPVKT
WGAGASLGGVRPWEADGFSAHEEEGLGQWQWSRKK*
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mRNA from alignment at chr1:141395..143023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00530.1 ID=NO01G00530.1|Name=NO01G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp|location=Sequence derived from alignment at chr1:141395..143023- (Nannochloropsis oceanica)
ATGTCTCCTCCACTCCGCCCGCCAGCCTCCTCCCTCCCCGCCTCGCTTCG
TCTCCAACAACTTATTATCAAGTACCTCATCAAGTCGAGTGATCCCTACC
GGCAAGAATTATTGGGTCAAACCCTCGGTGCTCTAGCCTATCCCTTGCTC
CGTCGATCTCTCCGTCGCCACTGTCCGACCCTTCCTACCCTCGAACACTT
TTTTAGGCCCGTCCTCGTGCCGGGAGAGCATGCCAAGGGCATTGAATGCT
GGTACAATAATGCACGATTTCAGACGTTTCTTCGGAAAGAATATTTGCAA
CGCGTGGCCGCTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAA
GGAGGCGGGTCAAAAGCCACAAGTAGCAGACGCATCAGCACCACCCGCAC
CAACACAATCAATCCATCCGCCCTGGGGCATGGATATCATATCCGACAAG
GATGGATTGAAAGCAACTCGCCTCCCGACCTATCAAGAACTCGTCGACTT
TTTCCTCCTTCATGATTGGAACCGTCGCCCTGGACCCCACAGCGCCGCAT
TTGAAGGAGCGAAGCGTCAAGCCCTCCTCCGCACACTTCAGGAGAAAGGC
CCGGATGTATCTTCATGGACACTCAATGACATCTTGGAACTGGGCGGGGC
ATGCGTGGAGGGACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTGGCT
CGTGGGATGTGTGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTATCTC
ACGAAACGTGCCCGCGAGCTCGCGTCCTCCCTCCCTTCCTCCTTCCCTTC
CTCCCTCCCCTCCTCCCCTCTTTCTCTCCCTCTTCTCGTCTTGGAAGTCG
GGGCTGGCACGGGTGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCCC
TCCCTGGTCACCTACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCCT
GCCTCCCTCCAGCCCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCT
TTGTGGAGGAGCTTTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGCG
GCTATCGTCGTTTGTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAAG
CATGAGGCAAGGGGGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATCT
TGATCGGAGAGCACGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGACG
TGGGGGGCCGGTGGGTTGGGGGATGGATGGAGTGAGGGAAGGAGGGGGTG
CAGGGCTTATTTTATGTGAAAAGGAGATTTGCATGTCTTCACATCCAATC
AGTGTATTCATAATTCATTTGTCCTCCCTCACTCCCTTCCTCCGACCCAG
GTGCGTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCGATGGCTTTAGTGCC
CACGAAGAAGAGGGGCTGGGTCAATGGCAGTGGTCACGGTATGATGGGAA
ACAATTCGCTCGGAACTCCGCCACAATCTGCTTTCGACGAGGGGGTAGTG
GAGGGAGAGAGGGAGGGAGAGAGGGAGAGAGGAGGGGTGGGAGGGGGGGA
GGGAGGAATGCATATAGGTAGGCAGTTTGAGGTTGTCTTAAGAACGAATT
ACGTACTACACTACAACAGGAAAAAATAA
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Coding sequence (CDS) from alignment at chr1:141395..143023-

>NO01G00530.1 ID=NO01G00530.1|Name=NO01G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr1:141395..143023- (Nannochloropsis oceanica)
ATGTCTCCTCCACTCCGCCCGCCAGCCTCCTCCCTCCCCGCCTCGCTTCG
TCTCCAACAACTTATTATCAAGTACCTCATCAAGTCGAGTGATCCCTACC
GGCAAGAATTATTGGGTCAAACCCTCGGTGCTCTAGCCTATCCCTTGCTC
CGTCGATCTCTCCGTCGCCACTGTCCGACCCTTCCTACCCTCGAACACTT
TTTTAGGCCCGTCCTCGTGCCGGGAGAGCATGCCAAGGGCATTGAATGCT
GGTACAATAATGCACGATTTCAGACGTTTCTTCGGAAAGAATATTTGCAA
CGCGTGGCCGCTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAA
GGAGGCGGGTCAAAAGCCACAAGTAGCAGACGCATCAGCACCACCCGCAC
CAACACAATCAATCCATCCGCCCTGGGGCATGGATATCATATCCGACAAG
GATGGATTGAAAGCAACTCGCCTCCCGACCTATCAAGAACTCGTCGACTT
TTTCCTCCTTCATGATTGGAACCGTCGCCCTGGACCCCACAGCGCCGCAT
TTGAAGGAGCGAAGCGTCAAGCCCTCCTCCGCACACTTCAGGAGAAAGGC
CCGGATGTATCTTCATGGACACTCAATGACATCTTGGAACTGGGCGGGGC
ATGCGTGGAGGGACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTGGCT
CGTGGGATGTGTGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTATCTC
ACGAAACGTGCCCGCGAGCTCGCGTCCTCCCTCCCTTCCTCCTTCCCTTC
CTCCCTCCCCTCCTCCCCTCTTTCTCTCCCTCTTCTCGTCTTGGAAGTCG
GGGCTGGCACGGGTGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCCC
TCCCTGGTCACCTACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCCT
GCCTCCCTCCAGCCCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCT
TTGTGGAGGAGCTTTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGCG
GCTATCGTCGTTTGTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAAG
CATGAGGCAAGGGGGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATCT
TGATCGGAGAGCACGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGACG
TGGGGGGCCGGTGCGTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCGATGG
CTTTAGTGCCCACGAAGAAGAGGGGCTGGGTCAATGGCAGTGGTCACGGA
AAAAATAA
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Synonyms
Publications