NO01G00410, NO01G00410 (gene) Nannochloropsis oceanica

Overview
NameNO01G00410
Unique NameNO01G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2004
Alignment locationchr1:109723..112274 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:109723..112274 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037197WWE_dom_sf
Homology
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BLAST of NO01G00410 vs. NCBI_GenBank
Match: EWM28967.1 (hypothetical protein Naga_100918g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 4.800e-25
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 0 
Query:  197 WTDVDEDRTALPPSCPPALNSLVCWIYLDEWGNEFAYSPQSQVLLEHEWRNGRDHAQLWIP-----------------XXXXXXXXXXXXXXXXXPYIVHFASSPSNIEGQEEEREDHIQVNRVTGTQRKVKRLTRGPRPPSGVGGAVRRMKVRLRKGKKAMAAL 345
            W DV ++   LPP     + ++ CW+YLDEWGNEF Y PQ+Q+LLE EWR G+ HA L +P                                   Y+VHFAS  +N  G EE    H+Q NR TGTQR+V+R+TRGP+P  G+G  VRR K R R+G++ +A L
Sbjct:  211 WYDVVKEVQDLPPPPSGPITTMFCWMYLDEWGNEFEYGPQAQLLLEREWRCGKAHALLLVPPPAPXXXXXXXESPLHRHTHRPHGAPPTDEGPPRSYVVHFASPQAN--GVEE----HVQSNRFTGTQRRVRRMTRGPKPSHGLGAVVRRWKGRWRRGQETLATL 369
The following BLAST results are available for this feature:
BLAST of NO01G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28967.14.800e-2541.82hypothetical protein Naga_100918g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00410.2NO01G00410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G00410.1NO01G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575907gene_18Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100918g1gene1644Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00410.2NO01G00410.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G00410.1NO01G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00410 ID=NO01G00410|Name=NO01G00410|organism=Nannochloropsis oceanica|type=gene|length=2004bp
GGGTGGATGGAGGCATCCTGTTGTGACGGGTAGTGTGATTAAAGATGGCG
GTGACAATTTCTGTGGTGGTCAATTTGCAGTTGAAGGGTTCAGTGAGTGA
ATGGTTATGGCGTAGATGAGTAGGATGGCGATGCGACAGACACAGCGGGG
TACGACTTTCTTACGACGTGTTATTCAATGGAACGAAACGCAACTGTTGC
CTCAAGTTGCTGCATGCCGTCGCTTGCCGTACAAATCGACGGCGAGGAGG
AACACGTGAGGTATGGATGTTCATTTGAACTTATGCGCCAATCCCTTCAG
ATCAAATAAAACAACAGCGCACCGGGGAAGATTATTGACAGCCTAAGGTG
GCTCTGGCGCGGCTCTCTTTAAACCTGTGgtcagtaatcggctttgaaca
cgaagaacactgcaactcaaaatccccttacagcattcgccgctcattga
ttcgattcatcctgaactcatttcattcacgcacactacacaagCTTGTA
GGCCCTCTCCAAAAAAATGGCGTGGTCACCAGTCAGAGCAGTCGGGCATC
CACTATGCCCCCCCGCCGGTGCCATTCCTGCTGTTGCTGCCGCTGCCGAT
CTGCGCGAGACCGACGAGGATGGAGGATGCTGGTCAGTGCTGGTGGAAAA
GAAGGACGAGGAGCTGGAGGAAAGTGTCCTAGGGCGAGAAGCAGAAGAGG
CGGATCAGTCAGTGGTAATTGAGGACTATAAATTCGGTCCTTCTACTAGG
CCGCTGCCGCCGCAGCGGCAGCAACACAAGCAGCACGAGGAGGAGACATC
CTTGCCACCACAGCCATCCCCTACTCCGCCGCCCCCTTCCTACCAGAACG
ATGACAACGGCAACGAGACGAACGACGAAGGAGAAGAAGTGCACCATAGA
AATGAAGAAGTAGGAGAATGGGACTTCGTGCCCGAACTCGGAGAGGCCAG
CTTCCGGGATGACAAACCCACCTGCGACGACGATCGACACAACACCAGGA
CCCCCGACACCCTGCCCATCTCTCCCTCCTGTCCCGCCCACTCGCCCTTC
TCACCGTCCTCGTCCTCCTCTTCCTCCCCCACCTGTCCTTCCCCCACCGA
TGACTGGACAGATGTCGACGAGGACCGCACCGCTCTCCCTCCCTCCTGCC
CGCCCGCCCTCAACAGTCTGGTTTGTTGGATATATCTCGATGAATGGGGC
AACGAATTTGCCTACAGCCCCCAATCCCAAGTTCTCCTCGAGCATGAATG
GCGAAATGGACGTGACCACGCGCAGCTCTGGATCCCCCCCCCTGCTTCCT
CGTCCTCTTCCTCATCCTCTTCCTCCCCCTCGATCATCCCCTACATTGTC
CACTTCGCCAGTTCCCCTTCTAACATTGAAGGCCAAGAAGAAGAAAGGGA
GGACCACATTCAAGTTAATCGCGTAACGGGCACTCAGCGGAAAGTTAAAC
GGCTGACGCGCGGCCCCAGGCCTCCAAGCGGCGTAGGGGGAGCAGTGCGG
AGGATGAAGGTGCGACTAAGGAAGGGGAAGAAGGCAATGGCAGCGCTGGg
taagtaagaagcaaggagagcgggatgtggaagaatggaacgtatgaaga
ggggatactagaatgatgggggtgctctctagatttattatggtggtgtt
attggtcaaatttattttctggcaaagcccacgtgcacccggcacacata
cctgccactggccctagtctgatggtcatcccctccctccctatcgccct
cccgccctcccgcccgcccgtcctcccagATGCCGAAACCGTCCTCCAGT
ACAGCAGGCAAAAATCTCTTCAAGCCGGACGTGCCCTCCACCATCGCGCG
CCAAGCAAAGAGCAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGCAGGAC
GATAACTTACCTTGACAGGGTAGTGCGAAGGATGAGGTAGGGAAGGAGGG
AAGGAGAGAAGGAGAGAAAGAGGGAGGGAGGGAGGGAGAGAGGGAGAGAG
GGAG
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protein sequence of NO01G00410.2

>NO01G00410.2-protein ID=NO01G00410.2-protein|Name=NO01G00410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MAWSPVRAVGHPLCPPAGAIPAVAAAADLRETDEDGGCWSVLVEKKDEEL
EESVLGREAEEADQSVVIEDYKFGPSTRPLPPQRQQHKQHEEETSLPPQP
SPTPPPPSYQNDDNGNETNDEGEEVHHRNEEVGEWDFVPELGEASFRDDK
PTCDDDRHNTRTPDTLPISPSCPAHSPFSPSSSSSSSPTCPSPTDDWTDV
DEDRTALPPSCPPALNSLVCWIYLDEWGNEFAYSPQSQVLLEHEWRNGRD
HAQLWIPPPASSSSSSSSSSPSIIPYIVHFASSPSNIEGQEEEREDHIQV
NRVTGTQRKVKRLTRGPRPPSGVGGAVRRMKVRLRKGKKAMAALDAETVL
QYSRQKSLQAGRALHHRAPSKEQVATAALAVASRTITYLDRVVRRMR*
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protein sequence of NO01G00410.1

>NO01G00410.1-protein ID=NO01G00410.1-protein|Name=NO01G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MAWSPVRAVGHPLCPPAGAIPAVAAAADLRETDEDGGCWSVLVEKKDEEL
EESVLGREAEEADQSVVIEDYKFGPSTRPLPPQRQQHKQHEEETSLPPQP
SPTPPPPSYQNDDNGNETNDEGEEVHHRNEEVGEWDFVPELGEASFRDDK
PTCDDDRHNTRTPDTLPISPSCPAHSPFSPSSSSSSSPTCPSPTDDWTDV
DEDRTALPPSCPPALNSLVCWIYLDEWGNEFAYSPQSQVLLEHEWRNGRD
HAQLWIPPPASSSSSSSSSSPSIIPYIVHFASSPSNIEGQEEEREDHIQV
NRVTGTQRKVKRLTRGPRPPSGVGGAVRRMKVRLRKGKKAMAALDAETVL
QYSRQKSLQAGRALHHRAPSKEQVATAALAVASRTITYLDRVVRRMSTEV
QHHRERQQKEQQQQQQQQQQKQQQQQQQSRQEQRQQEQHQQQQHQEEKQA
HLKSHTYKIRKSDLHSPPTHDFSPSPATRESRQVLAGEREGKRELDAWGG
GGGGAEGGEEEWVDSLEASVKIRQGPLLDLGEEGYK*
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Synonyms
Publications