NO01G00410.1, NO01G00410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00410.1
Unique Name	NO01G00410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2012
Alignment location	chr1:109723..112274 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:109723..112274 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G00410.1 vs.
Match: EWM28967.1 (hypothetical protein Naga_100918g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 1.800e-32
Identity = 135/368 (36.68%), Postives = 179/368 (48.64%), Query Frame = 0

Query:   19 AIPAVAAAADLRE------TDEDGGCWSVLVE----KKDEELE--------ESVLGREAEEADQSVVIEDYKFGPSTRPLPPQRQQHKQHEEETSLPPQPSPTPPPPSYQNDDNGNETNDEG------EEVHHRNEEVGEWDFVPELGEASFRDDKPTCDDDRHNTRT-PDTLPISPSCPAHSPFSPSSSSSSSPTCPSPTDDWTDVDEDRTALPPSCPPALNSLVCWIYLDEWGNEFAYSPQSQVLLEHEWRNGRDHAQLWIPPPASSSSSSSSSSP-----------------SIIPYIVHFASSPSNIEGQEEEREDHIQVNRVTGTQRKVKRLTRGPRPPSGVGGAVRRMKVRLRKGKKAMAAL 345
            ++ AV A  +L++      T E+G  WS LVE    +  EE++        E + GRE  E D +VVI+D       RPL  QR         + LP +PS     P +   D G  T+ EG      EE+    EE   WD + +L E         C      +   P T P  P  P H   +PS+ SSSS         W DV ++   LPP     + ++ CW+YLDEWGNEF Y PQ+Q+LLE EWR G+ HA L +PPPA    S    SP                     Y+VHFAS  +N  G EE    H+Q NR TGTQR+V+R+TRGP+P  G+G  VRR K R R+G++ +A L
Sbjct:   37 SLSAVDAGFELKQRVERAGTSEEGRGWSGLVESHRGRSREEVQTQGMAGGMEGMEGREEGEED-TVVIDD-----DQRPLSIQRS--------SLLPGEPSSLTQNPLWPGPDEGT-TDHEGVPWGGEEEIKTEGEEEATWDMLDDLPEIPH-----LCSIHASQSHALPATAPTEPLSPPHQ--APSTHSSSS-------GGWYDVVKEVQDLPPPPSGPITTMFCWMYLDEWGNEFEYGPQAQLLLEREWRCGKAHALLLVPPPAPPCPSPPGESPLHRHTHRPHGAPPTDEGPPRSYVVHFASPQAN--GVEE----HVQSNRFTGTQRRVRRMTRGPKPSHGLGAVVRRWKGRWRRGQETLATL 369

The following BLAST results are available for this feature:

BLAST of NO01G00410.1 vs.

BLAST of NO01G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28967.1	1.800e-32	36.68	hypothetical protein Naga_100918g1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00410	NO01G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00410.1	NO01G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00410.1.cds1	NO01G00410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00410.1.cds2	NO01G00410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00410.1.cds3	NO01G00410.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:109723..112274-
coding sequence from alignment at chr1:109723..112274-

mRNA sequence

>NO01G00410.1 ID=NO01G00410.1|Name=NO01G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp
GGGTGGATGGAGGCATCCTGTTGTGACGGGTAGTGTGATTAAAGATGGCG
GTGACAATTTCTGTGGTGGTCAATTTGCAGTTGAAGGGTTCAGTGAGTGA
ATGGTTATGGCGTAGATGAGTAGGATGGCGATGCGACAGACACAGCGGGG
TACGACTTTCTTACGACGTGTTATTCAATGGAACGAAACGCAACTGTTGC
CTCAAGTTGCTGCATGCCGTCGCTTGCCGTACAAATCGACGGCGAGGAGG
AACACGTGAGGTATGGATGTTCATTTGAACTTATGCGCCAATCCCTTCAG
ATCAAATAAAACAACAGCGCACCGGGGAAGATTATTGACAGCCTAAGGTG
GCTCTGGCGCGGCTCTCTTTAAACCTGTGCTTGTAGGCCCTCTCCAAAAA
AATGGCGTGGTCACCAGTCAGAGCAGTCGGGCATCCACTATGCCCCCCCG
CCGGTGCCATTCCTGCTGTTGCTGCCGCTGCCGATCTGCGCGAGACCGAC
GAGGATGGAGGATGCTGGTCAGTGCTGGTGGAAAAGAAGGACGAGGAGCT
GGAGGAAAGTGTCCTAGGGCGAGAAGCAGAAGAGGCGGATCAGTCAGTGG
TAATTGAGGACTATAAATTCGGTCCTTCTACTAGGCCGCTGCCGCCGCAG
CGGCAGCAACACAAGCAGCACGAGGAGGAGACATCCTTGCCACCACAGCC
ATCCCCTACTCCGCCGCCCCCTTCCTACCAGAACGATGACAACGGCAACG
AGACGAACGACGAAGGAGAAGAAGTGCACCATAGAAATGAAGAAGTAGGA
GAATGGGACTTCGTGCCCGAACTCGGAGAGGCCAGCTTCCGGGATGACAA
ACCCACCTGCGACGACGATCGACACAACACCAGGACCCCCGACACCCTGC
CCATCTCTCCCTCCTGTCCCGCCCACTCGCCCTTCTCACCGTCCTCGTCC
TCCTCTTCCTCCCCCACCTGTCCTTCCCCCACCGATGACTGGACAGATGT
CGACGAGGACCGCACCGCTCTCCCTCCCTCCTGCCCGCCCGCCCTCAACA
GTCTGGTTTGTTGGATATATCTCGATGAATGGGGCAACGAATTTGCCTAC
AGCCCCCAATCCCAAGTTCTCCTCGAGCATGAATGGCGAAATGGACGTGA
CCACGCGCAGCTCTGGATCCCCCCCCCTGCTTCCTCGTCCTCTTCCTCAT
CCTCTTCCTCCCCCTCGATCATCCCCTACATTGTCCACTTCGCCAGTTCC
CCTTCTAACATTGAAGGCCAAGAAGAAGAAAGGGAGGACCACATTCAAGT
TAATCGCGTAACGGGCACTCAGCGGAAAGTTAAACGGCTGACGCGCGGCC
CCAGGCCTCCAAGCGGCGTAGGGGGAGCAGTGCGGAGGATGAAGGTGCGA
CTAAGGAAGGGGAAGAAGGCAATGGCAGCGCTGGATGCCGAAACCGTCCT
CCAGTACAGCAGGCAAAAATCTCTTCAAGCCGGACGTGCCCTCCACCATC
GCGCGCCAAGCAAAGAGCAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGC
AGGACGATAACTTACCTTGACAGGGTAGTGCGAAGGATGAGTACTGAGGT
GCAGCATCATAGGGAAAGGCAGCAGAAGGAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAAAAACAGCAACAGCAACAGCAACAGTCTCGGCAGGAGCAA
AGGCAGCAGGAACAACATCAACAACAGCAGCATCAAGAGGAAAAACAAGC
ACATCTCAAGAGCCACACATATAAGATTAGGAAAAGTGATTTGCATTCTC
CTCCCACTCACGATTTTTCGCCGTCACCTGCCACGAGAGAATCGCGGCAG
GTGTTGGCCGGTGAGAGAGAAGGAAAAAGAGAACTGGACGCATGGGGAGG
AGGAGGAGGAGGAGCTGAAGGAGGAGAGGAGGAATGGGTGGATAGTTTGG
AAGCGAGCGTGAAGATAAGGCAGGGGCCTTTGCTGGATTTGGGGGAAGAA
GGCTATAAGTAA

protein sequence of NO01G00410.1

>NO01G00410.1-protein ID=NO01G00410.1-protein|Name=NO01G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MAWSPVRAVGHPLCPPAGAIPAVAAAADLRETDEDGGCWSVLVEKKDEEL
EESVLGREAEEADQSVVIEDYKFGPSTRPLPPQRQQHKQHEEETSLPPQP
SPTPPPPSYQNDDNGNETNDEGEEVHHRNEEVGEWDFVPELGEASFRDDK
PTCDDDRHNTRTPDTLPISPSCPAHSPFSPSSSSSSSPTCPSPTDDWTDV
DEDRTALPPSCPPALNSLVCWIYLDEWGNEFAYSPQSQVLLEHEWRNGRD
HAQLWIPPPASSSSSSSSSSPSIIPYIVHFASSPSNIEGQEEEREDHIQV
NRVTGTQRKVKRLTRGPRPPSGVGGAVRRMKVRLRKGKKAMAALDAETVL
QYSRQKSLQAGRALHHRAPSKEQVATAALAVASRTITYLDRVVRRMSTEV
QHHRERQQKEQQQQQQQQQQKQQQQQQQSRQEQRQQEQHQQQQHQEEKQA
HLKSHTYKIRKSDLHSPPTHDFSPSPATRESRQVLAGEREGKRELDAWGG
GGGGAEGGEEEWVDSLEASVKIRQGPLLDLGEEGYK*

mRNA from alignment at chr1:109723..112274-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00410.1 ID=NO01G00410.1|Name=NO01G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp|location=Sequence derived from alignment at chr1:109723..112274- (Nannochloropsis oceanica)
GGGTGGATGGAGGCATCCTGTTGTGACGGGTAGTGTGATTAAAGATGGCG
GTGACAATTTCTGTGGTGGTCAATTTGCAGTTGAAGGGTTCAGTGAGTGA
ATGGTTATGGCGTAGATGAGTAGGATGGCGATGCGACAGACACAGCGGGG
TACGACTTTCTTACGACGTGTTATTCAATGGAACGAAACGCAACTGTTGC
CTCAAGTTGCTGCATGCCGTCGCTTGCCGTACAAATCGACGGCGAGGAGG
AACACGTGAGGTATGGATGTTCATTTGAACTTATGCGCCAATCCCTTCAG
ATCAAATAAAACAACAGCGCACCGGGGAAGATTATTGACAGCCTAAGGTG
GCTCTGGCGCGGCTCTCTTTAAACCTGTGGTCAGTAATCGGCTTTGAACA
CGAAGAACACTGCAACTCAAAATCCCCTTACAGCATTCGCCGCTCATTGA
TTCGATTCATCCTGAACTCATTTCATTCACGCACACTACACAAGCTTGTA
GGCCCTCTCCAAAAAAATGGCGTGGTCACCAGTCAGAGCAGTCGGGCATC
CACTATGCCCCCCCGCCGGTGCCATTCCTGCTGTTGCTGCCGCTGCCGAT
CTGCGCGAGACCGACGAGGATGGAGGATGCTGGTCAGTGCTGGTGGAAAA
GAAGGACGAGGAGCTGGAGGAAAGTGTCCTAGGGCGAGAAGCAGAAGAGG
CGGATCAGTCAGTGGTAATTGAGGACTATAAATTCGGTCCTTCTACTAGG
CCGCTGCCGCCGCAGCGGCAGCAACACAAGCAGCACGAGGAGGAGACATC
CTTGCCACCACAGCCATCCCCTACTCCGCCGCCCCCTTCCTACCAGAACG
ATGACAACGGCAACGAGACGAACGACGAAGGAGAAGAAGTGCACCATAGA
AATGAAGAAGTAGGAGAATGGGACTTCGTGCCCGAACTCGGAGAGGCCAG
CTTCCGGGATGACAAACCCACCTGCGACGACGATCGACACAACACCAGGA
CCCCCGACACCCTGCCCATCTCTCCCTCCTGTCCCGCCCACTCGCCCTTC
TCACCGTCCTCGTCCTCCTCTTCCTCCCCCACCTGTCCTTCCCCCACCGA
TGACTGGACAGATGTCGACGAGGACCGCACCGCTCTCCCTCCCTCCTGCC
CGCCCGCCCTCAACAGTCTGGTTTGTTGGATATATCTCGATGAATGGGGC
AACGAATTTGCCTACAGCCCCCAATCCCAAGTTCTCCTCGAGCATGAATG
GCGAAATGGACGTGACCACGCGCAGCTCTGGATCCCCCCCCCTGCTTCCT
CGTCCTCTTCCTCATCCTCTTCCTCCCCCTCGATCATCCCCTACATTGTC
CACTTCGCCAGTTCCCCTTCTAACATTGAAGGCCAAGAAGAAGAAAGGGA
GGACCACATTCAAGTTAATCGCGTAACGGGCACTCAGCGGAAAGTTAAAC
GGCTGACGCGCGGCCCCAGGCCTCCAAGCGGCGTAGGGGGAGCAGTGCGG
AGGATGAAGGTGCGACTAAGGAAGGGGAAGAAGGCAATGGCAGCGCTGGG
TAAGTAAGAAGCAAGGAGAGCGGGATGTGGAAGAATGGAACGTATGAAGA
GGGGATACTAGAATGATGGGGGTGCTCTCTAGATTTATTATGGTGGTGTT
ATTGGTCAAATTTATTTTCTGGCAAAGCCCACGTGCACCCGGCACACATA
CCTGCCACTGGCCCTAGTCTGATGGTCATCCCCTCCCTCCCTATCGCCCT
CCCGCCCTCCCGCCCGCCCGTCCTCCCAGATGCCGAAACCGTCCTCCAGT
ACAGCAGGCAAAAATCTCTTCAAGCCGGACGTGCCCTCCACCATCGCGCG
CCAAGCAAAGAGCAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGCAGGAC
GATAACTTACCTTGACAGGGTAGTGCGAAGGATGAGGTAGGGAAGGAGGG
AAGGAGAGAAGGAGAGAAAGAGGGAGGGAGGGAGGGAGAGAGGGAGAGAG
GGAGAGAGGGAGGGAGTGAGGGAGGGAAAGGAGGGAAGAGGCATACTTGA
AGGAGGATAGCGACAGCGACACACACAATCGGGATAATTTATGGAAACAA
ACCCACCAACTATCTTTTCATCTAACCGCAGTACTGAGGTGCAGCATCAT
AGGGAAAGGCAGCAGAAGGAGCAGCAGCAGCAGCAGCAGCAGCAACAACA
AAAACAGCAACAGCAACAGCAACAGTCTCGGCAGGAGCAAAGGCAGCAGG
AACAACATCAACAACAGCAGCATCAAGAGGAAAAACAAGCACATCTCAAG
AGCCACACATATAAGATTAGGAAAAGTGATTTGCATTCTCCTCCCACTCA
CGATTTTTCGCCGTCACCTGCCACGAGAGAATCGCGGCAGGTGTTGGCCG
GTGAGAGAGAAGGAAAAAGAGAACTGGACGCATGGGGAGGAGGAGGAGGA
GGAGCTGAAGGAGGAGAGGAGGAATGGGTGGATAGTTTGGAAGCGAGCGT
GAAGATAAGGCAGGGGCCTTTGCTGGATTTGGGGGAAGAAGGCTATAAGT
AA

Coding sequence (CDS) from alignment at chr1:109723..112274-

>NO01G00410.1 ID=NO01G00410.1|Name=NO01G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr1:109723..112274- (Nannochloropsis oceanica)
ATGGCGTGGTCACCAGTCAGAGCAGTCGGGCATCCACTATGCCCCCCCGC
CGGTGCCATTCCTGCTGTTGCTGCCGCTGCCGATCTGCGCGAGACCGACG
AGGATGGAGGATGCTGGTCAGTGCTGGTGGAAAAGAAGGACGAGGAGCTG
GAGGAAAGTGTCCTAGGGCGAGAAGCAGAAGAGGCGGATCAGTCAGTGGT
AATTGAGGACTATAAATTCGGTCCTTCTACTAGGCCGCTGCCGCCGCAGC
GGCAGCAACACAAGCAGCACGAGGAGGAGACATCCTTGCCACCACAGCCA
TCCCCTACTCCGCCGCCCCCTTCCTACCAGAACGATGACAACGGCAACGA
GACGAACGACGAAGGAGAAGAAGTGCACCATAGAAATGAAGAAGTAGGAG
AATGGGACTTCGTGCCCGAACTCGGAGAGGCCAGCTTCCGGGATGACAAA
CCCACCTGCGACGACGATCGACACAACACCAGGACCCCCGACACCCTGCC
CATCTCTCCCTCCTGTCCCGCCCACTCGCCCTTCTCACCGTCCTCGTCCT
CCTCTTCCTCCCCCACCTGTCCTTCCCCCACCGATGACTGGACAGATGTC
GACGAGGACCGCACCGCTCTCCCTCCCTCCTGCCCGCCCGCCCTCAACAG
TCTGGTTTGTTGGATATATCTCGATGAATGGGGCAACGAATTTGCCTACA
GCCCCCAATCCCAAGTTCTCCTCGAGCATGAATGGCGAAATGGACGTGAC
CACGCGCAGCTCTGGATCCCCCCCCCTGCTTCCTCGTCCTCTTCCTCATC
CTCTTCCTCCCCCTCGATCATCCCCTACATTGTCCACTTCGCCAGTTCCC
CTTCTAACATTGAAGGCCAAGAAGAAGAAAGGGAGGACCACATTCAAGTT
AATCGCGTAACGGGCACTCAGCGGAAAGTTAAACGGCTGACGCGCGGCCC
CAGGCCTCCAAGCGGCGTAGGGGGAGCAGTGCGGAGGATGAAGGTGCGAC
TAAGGAAGGGGAAGAAGGCAATGGCAGCGCTGGATGCCGAAACCGTCCTC
CAGTACAGCAGGCAAAAATCTCTTCAAGCCGGACGTGCCCTCCACCATCG
CGCGCCAAGCAAAGAGCAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGCA
GGACGATAACTTACCTTGACAGGGTAGTGCGAAGGATGAGTACTGAGGTG
CAGCATCATAGGGAAAGGCAGCAGAAGGAGCAGCAGCAGCAGCAGCAGCA
GCAACAACAAAAACAGCAACAGCAACAGCAACAGTCTCGGCAGGAGCAAA
GGCAGCAGGAACAACATCAACAACAGCAGCATCAAGAGGAAAAACAAGCA
CATCTCAAGAGCCACACATATAAGATTAGGAAAAGTGATTTGCATTCTCC
TCCCACTCACGATTTTTCGCCGTCACCTGCCACGAGAGAATCGCGGCAGG
TGTTGGCCGGTGAGAGAGAAGGAAAAAGAGAACTGGACGCATGGGGAGGA
GGAGGAGGAGGAGCTGAAGGAGGAGAGGAGGAATGGGTGGATAGTTTGGA
AGCGAGCGTGAAGATAAGGCAGGGGCCTTTGCTGGATTTGGGGGAAGAAG
GCTATAAGTAA

Synonyms

Publications