NO01G00380, NO01G00380 (gene) Nannochloropsis oceanica

Overview
NameNO01G00380
Unique NameNO01G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4516
Alignment locationchr1:92837..97352 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, CCCH-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:92837..97352 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
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BLAST of NO01G00380 vs. NCBI_GenBank
Match: EWM28958.1 (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 7.000e-15
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:  328 LARTSSEPRPPVHCFTRGSIPASSE--ATGFKRMPRDLATGRRVCFYFNNKVCAASDRCPFVHVKVDPSLITPGTFHKPVPAS 409
            L + SS+P         G++PAS     +GF+RMPRD+ TGRR+CFYFNNK C+  ++C FVHVK D SLITPGT  KP P S
Sbjct:  298 LVKQSSDP---------GAVPASLPVLGSGFQRMPRDIETGRRICFYFNNKGCSMGEKCAFVHVKADSSLITPGTAQKPPPGS 371
The following BLAST results are available for this feature:
BLAST of NO01G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28958.17.000e-1554.22Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00380.1NO01G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G00380.2NO01G00380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G00380.3NO01G00380.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|227668gene_14Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100308g4gene1652Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00380.1NO01G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G00380.2NO01G00380.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G00380.3NO01G00380.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00380 ID=NO01G00380|Name=NO01G00380|organism=Nannochloropsis oceanica|type=gene|length=4516bp
ACCAGGCCGGCAAATACTTTTCGACAGGTCAGCCGATGATTGCATCCAGG
ACCTGAGCAATCAAAGTGGACGAGCAACCTAGACGCGGACCTGGGGGACG
AGATGAAAGGACGCCGGCCGAGCGCGGGGGTGGCTGGACGGGATACCATT
GACGTCGATAGCAGCGAGGAGAGCGGCACGAATACTGCTAGTGCGGCTGC
CACCACCAGCAGCACCGCGGCCCGGGACTCCGTCTCGCAGAGGAAGGTGT
GCGGTAATCACGTGCACGGGAACGTTGACTGCGAGGGCAGGGAGGGCGCG
CATGACGCGTGTCCGGTGGAGAGGGGAGAAGGAGATGCAATGAGGTGGGA
AGGGGGAAATGAAATCAGAAAGCAAGCTAGTGGAGACAATGACAATGAGG
CAGACACACTGCGATCTAGgtacttgccggagtatatcgatagcggcaag
aatggaagggaggcaagcacagcgatcgcatccgattcttatgttctcta
agtttatgacaaggcatgccgcggtatttaacagcatgcacccgcacact
cacatttctccctttcttgcatcatctcctttttcatattcaacttacag
TGCTGGTCCCACGCCCGAGCGTGGCGGCGACGCGAGGGAGCCTAGCGCTT
CCCGTCCCGTTGGCACTCCCAACCCATCTCGTCCCGGCGTCTCCTCCTCC
TCCTCCTCCTCCTCCTTCTCTACAAATCCCACTGCCGAAGGGCCTGTAAA
GGAATTAGATCGAGACAACAGCAGTACTACCAGCACCAGCGTCCACAACG
GTAATGTTGCGGACGTCAGCAGCCCCATGATGAGCTGCAGGAGCCACAAG
GACAGCGAGAGAAGCAGAGATGAAGTTAATTGTGAAGCAGGGGAAGAGCA
GGGGTTGGCGGAGGGGGAAAGGTGCTTAGCATCATTGATAGAAGAGGCAG
AGTGGCTTCAAATTGAAGGAGAAGGAGGAGGAGGCAAAGGAGTAGAAGGA
AGAAGAGAAGAACGACGAGGAGAAGAGAGAGGGGAAGGGGAGAGCGATAG
TGATAGCCAAGAAGGAGAAGATGACGGGGAAAGAGAGACAAAAATAGGAA
AACATGGGAGGGAAAGCAGGGAGCAGCTACAGTCACCAGTCAACAGTGGA
AGTGGTGATCTGTCTCAATTGCCCTGCAGCGCCTTTTCCCCCCGCTCCTC
CTCCACCACTCAGTCCGTGGCTCCTCCTCCCTTTAACCGTGCCACTGCCC
CTGCGTTTCCCTTCCTGGCCAGGACGAGCTCCGAACCCCGCCCGCCTGTG
CATTGCTTCACACGAGGCTCCATCCCTGCCTCCTCAGAGgtaaccccccc
ctccctcctttcctcccttcgttccttcctctttcttcattttatactgc
tgtggtctctcgctgattttcctgctgtcgtcatccacccctcctccttc
ctaccttccctcctctccttcctccttcgagttttgttgtatatcaatgt
gtgccaacggacctcctttctcttcccctcaccccgtccctccctccctc
cctccctccctccctccaaagGCCACGGGCTTCAAGAGGATGCCTCGTGA
CCTGGCCACCGGGCGACGGGTCTGCTTTTACTTCAATAACAAAGTTTGTG
CAGCCAGCGATCGATGTCCTTTCGTGCATGTGAAGgtgaagaagggaggg
agggagggaggagggaaggagtgttgtttggtgtatggagtcacatgacg
agtgtaaggcctgtgcggtcactcgttgtgatgtttgtcgtccggacctg
agagagggaggggaggaaaaagggtggacgtttaaggaatgccaccttct
tcttggtgcttaaccctccctccctccctccctccctccctccctccctc
cctccctccctccctcccagGTGGATCCGTCTCTGATCACCCCCGGGACC
TTCCACAAGCCAGTTCCCGCGTCAGCTACCCCCACTGCCGCCCCTCTCTC
CCTCCCTCCCTCCCTCCATCCATCCCGCTCCCACTCCTCCCGCAATGGGG
GCGAGGCAATGCACCTCCAGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCGGTACCGCACCCCTACCTCCCGGCCATCCTCCTTTGTGCGCTCGTA
CTCTATGGGCAACGACAGCGGTAGGGGTCATATCCCCTTCCCTCCCCCCC
TACCGCAGGAGGTGCGGGGGGAAGGGGAGGGAGGGGCCGAAGGAGAGAGG
ACGGAACGCAGGGTGCCGTTGTTGCAGCCACAGCAGCAGCAGCATCAGCA
GGAGGAGGAGGAGGAGGAGGAGACCATGTACGGGTATGAAGGAGGGGGTG
GAGAGTATTGGGAAGGGCAGCAGCAAGAGCAGCAGGTGTCTCCATCCGTT
CATCGCCACTACATGCAACTACCGCCAGCAGTAGCAGCCGAAGGAGGGGC
GGGGAGAGAAAGAGGCAATGGCGAGGAACAAAAAGGAGGAGGAGGAAAAG
GAGGAGGAGGAAGAGGAGGAGGAGAATTTCCGTTCCCCTCCTGGCGTCGG
CAGAAAGGGAATAGAGAGAGAGGCAGGAGGGGGTGGACTAGGGGGAGTTC
GAGGGCAGTGGAAGTGGTTGAGGGAGAAGGGGAGGAGGGAGACGGTGCAT
ACAGTGAATCCACCCACCCCCTCCACCAGCAGTCCTACAACTATAGCGTC
GATGGCCCTCCCGCCCCCTCCTTTCTCCCTGCCCAGGCCCCCCTCGTTGG
CGGTGCTTTTCATCCTCCACAACACCTTCCTCCTTCGTTCTCCTCCTACT
ACGCGCGAGGGCCAGCTGCTGCTGTGGGTCCTCTTCGTCCTTCTCCCCTT
CCTCCAGCTCCTCCCGCCTACGTGTACTACCAGTACATCCCTCCCTCGCA
CCCTCCCTATCCTATTCTCTACGCCTCCTCCCACCCACCCGCTTACCCTC
CCTACTTACCTGAAGGCGCCGCGGCTCCGTCCATACACTTGATGGGAGGC
AGGGAAGGAGGAGTGGGGGCAGATGGAGGGAGGGAAGGAGGATGGGAGAA
ACATTGGTTGGAGCAGCAGCAGCATATCTACCACCCACACATGCAGGATG
AGTACCAGCAGATGCATATGGCGGATGTCGCGGAGTCGAAGCGGGGATGG
GAGGGAGGGACTGGGTGGGGAAGGGAGGGAGGGAGAGAGAGAGAGATGGA
GAGAGGGAGGGAGGGAGGAAGGGAGAGGTATTCCTATTACCAGCAACAAT
ACCACCATCGTTAGCTCAAACAGCATCACACACTGGCAGCAGTGGAAAGA
GTAGAAGCAATAGCAGCAGTACTCGTAGTAGTATAAGTAGAATAGTAGCT
GTAGCAGCACCAGCACCAGCATCTATGTCAAAGCTTAAAGCAACAAGATA
GCGATCACTCAAAAGTATCGAGCGGATAGGGACAAGGGGAAACAGGAAAA
TGCGGAGGAGGGTGAAGATGAGAAGGAAAACATCTAAGGCAATGTCGGCA
ACGTAGGGGAGAGGGGAGAAAATTATAAGGGACGGAGGGAGAGAGGAGGA
GAATAGGGATTGCAATCCTGAAGAGGCAAAGAGAGAAGAAGGGTTGTTAG
TGATGTTGTTTCATGTACGCCTTGCGTGTTGTTGGGAAGTGGGAATCGCC
AAGAGAGGGATTCATGCATGTTGTGTGGTAAATGTCTTACACAATTTTGG
TGTGCAAGGAGGTGCGATCGGTCAATATATATTGTTACATCGGGAGGGGA
GGGAACGGAGAGAAATTCGGATATGTGGTGGTTTGAGAGAGTGGGGGGAG
GACGATCAGTATGAGGACTCTAAGGTGTGGAGGGTGTATTTTTCAAGCAG
AAACGCAGGCGACAAAGGCCACGAAGGCGAAGAAAGGCGCTTTTTCTAAT
TATCTTGTCGCTGCTTGACATGAAGCCTAAGAGTTTTTTCGCCGAGTCGT
CATAGGGGCTGTAGGGAGGAGTGCTGTAAAGAGGTGAGTCGTTGAAAGGG
AGCTTGGAAATGGCCGAAGCAGCTTAGGATCGTCCCTTCAGGTGCTTGGA
AACATCCTAGTTCTTGATATTGATTAGAAAGACTCGTTATTGAAATCAAG
GCGCCGAAGATTGAAAGTAAACCGCGCTGCATTATTATTTCTGTCACGCC
GTGGCCTTGTGCAGCGGATTGAGAAGTTAGTGAACCGGTGGATCAAAAGC
TATGGATAATGAGAGAAAGAATCTGAGACATGAGCCATAAGAAATGAGAA
TGGATGAATTTGACCCATGACAAATGACAGGAAAAGCATCTGAATTATGA
GAAACGAGAGAGATGGAAGCTCAAATTCCTGATTTGCACACCAGGCTGAC
CGAAAACGGAAACCCTGTTCCACCAAAAGAAGGAAGACAAGAGGTCGCGC
AGCAAGCCCTCATTGGATGTAATGCCTTATCTGCCTTCCTAACATTTCCC
TTTGGAGACTCGAAACAGAAAATATCTACAACTGACAAACAAAAAGCAAA
GTTGGTGAATTATTTA
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protein sequence of NO01G00380.1

>NO01G00380.1-protein ID=NO01G00380.1-protein|Name=NO01G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=813bp
MKGRRPSAGVAGRDTIDVDSSEESGTNTASAAATTSSTAARDSVSQRKVC
GNHVHGNVDCEGREGAHDACPVERGEGDAMSAGPTPERGGDAREPSASRP
VGTPNPSRPGVSSSSSSSSFSTNPTAEGPVKELDRDNSSTTSTSVHNGNV
ADVSSPMMSCRSHKDSERSRDEVNCEAGEEQGLAEGERCLASLIEEAEWL
QIEGEGGGGKGVEGRREERRGEERGEGESDSDSQEGEDDGERETKIGKHG
RESREQLQSPVNSGSGDLSQLPCSAFSPRSSSTTQSVAPPPFNRATAPAF
PFLARTSSEPRPPVHCFTRGSIPASSEATGFKRMPRDLATGRRVCFYFNN
KVCAASDRCPFVHVKVDPSLITPGTFHKPVPASATPTAAPLSLPPSLHPS
RSHSSRNGGEAMHLQQLQQQQQQQQQRYRTPTSRPSSFVRSYSMGNDSGR
GHIPFPPPLPQEVRGEGEGGAEGERTERRVPLLQPQQQQHQQEEEEEEET
MYGYEGGGGEYWEGQQQEQQVSPSVHRHYMQLPPAVAAEGGAGRERGNGE
EQKGGGGKGGGGRGGGEFPFPSWRRQKGNRERGRRGWTRGSSRAVEVVEG
EGEEGDGAYSESTHPLHQQSYNYSVDGPPAPSFLPAQAPLVGGAFHPPQH
LPPSFSSYYARGPAAAVGPLRPSPLPPAPPAYVYYQYIPPSHPPYPILYA
SSHPPAYPPYLPEGAAAPSIHLMGGREGGVGADGGREGGWEKHWLEQQQH
IYHPHMQDEYQQMHMADVAESKRGWEGGTGWGREGGREREMERGREGGRE
RYSYYQQQYHHR*
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protein sequence of NO01G00380.2

>NO01G00380.2-protein ID=NO01G00380.2-protein|Name=NO01G00380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=813bp
MKSESKLVETMTMRQTHCDLGTCRSISIAARMEGRQAQRSHPILMFSKFM
TRHAAVFNSMHPHTHISPFLASSPFSYSTYSAGPTPERGGDAREPSASRP
VGTPNPSRPGVSSSSSSSSFSTNPTAEGPVKELDRDNSSTTSTSVHNGNV
ADVSSPMMSCRSHKDSERSRDEVNCEAGEEQGLAEGERCLASLIEEAEWL
QIEGEGGGGKGVEGRREERRGEERGEGESDSDSQEGEDDGERETKIGKHG
RESREQLQSPVNSGSGDLSQLPCSAFSPRSSSTTQSVAPPPFNRATAPAF
PFLARTSSEPRPPVHCFTRGSIPASSEATGFKRMPRDLATGRRVCFYFNN
KVCAASDRCPFVHVKVDPSLITPGTFHKPVPASATPTAAPLSLPPSLHPS
RSHSSRNGGEAMHLQQLQQQQQQQQQRYRTPTSRPSSFVRSYSMGNDSGR
GHIPFPPPLPQEVRGEGEGGAEGERTERRVPLLQPQQQQHQQEEEEEEET
MYGYEGGGGEYWEGQQQEQQVSPSVHRHYMQLPPAVAAEGGAGRERGNGE
EQKGGGGKGGGGRGGGEFPFPSWRRQKGNRERGRRGWTRGSSRAVEVVEG
EGEEGDGAYSESTHPLHQQSYNYSVDGPPAPSFLPAQAPLVGGAFHPPQH
LPPSFSSYYARGPAAAVGPLRPSPLPPAPPAYVYYQYIPPSHPPYPILYA
SSHPPAYPPYLPEGAAAPSIHLMGGREGGVGADGGREGGWEKHWLEQQQH
IYHPHMQDEYQQMHMADVAESKRGWEGGTGWGREGGREREMERGREGGRE
RYSYYQQQYHHR*
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protein sequence of NO01G00380.3

>NO01G00380.3-protein ID=NO01G00380.3-protein|Name=NO01G00380.3|organism=Nannochloropsis oceanica|type=polypeptide|length=838bp
MKGRRPSAGVAGRDTIDVDSSEESGTNTASAAATTSSTAARDSVSQRKVC
GNHVHGNVDCEGREGAHDACPVERGEGDAMRWEGGNEIRKQASGDNDNEA
DTLRSSAGPTPERGGDAREPSASRPVGTPNPSRPGVSSSSSSSSFSTNPT
AEGPVKELDRDNSSTTSTSVHNGNVADVSSPMMSCRSHKDSERSRDEVNC
EAGEEQGLAEGERCLASLIEEAEWLQIEGEGGGGKGVEGRREERRGEERG
EGESDSDSQEGEDDGERETKIGKHGRESREQLQSPVNSGSGDLSQLPCSA
FSPRSSSTTQSVAPPPFNRATAPAFPFLARTSSEPRPPVHCFTRGSIPAS
SEATGFKRMPRDLATGRRVCFYFNNKVCAASDRCPFVHVKVDPSLITPGT
FHKPVPASATPTAAPLSLPPSLHPSRSHSSRNGGEAMHLQQLQQQQQQQQ
QRYRTPTSRPSSFVRSYSMGNDSGRGHIPFPPPLPQEVRGEGEGGAEGER
TERRVPLLQPQQQQHQQEEEEEEETMYGYEGGGGEYWEGQQQEQQVSPSV
HRHYMQLPPAVAAEGGAGRERGNGEEQKGGGGKGGGGRGGGEFPFPSWRR
QKGNRERGRRGWTRGSSRAVEVVEGEGEEGDGAYSESTHPLHQQSYNYSV
DGPPAPSFLPAQAPLVGGAFHPPQHLPPSFSSYYARGPAAAVGPLRPSPL
PPAPPAYVYYQYIPPSHPPYPILYASSHPPAYPPYLPEGAAAPSIHLMGG
REGGVGADGGREGGWEKHWLEQQQHIYHPHMQDEYQQMHMADVAESKRGW
EGGTGWGREGGREREMERGREGGRERYSYYQQQYHHR*
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Synonyms
Publications