EWM22827.1, cds7848 (CDS) Nannochloropsis gaditana

Overview
NameEWM22827.1
Unique Namecds7848
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002475.1:34134..34271 -
Alignment locationCM002475.1:33909..33988 -
Alignment locationCM002475.1:33584..33762 -
Alignment locationCM002475.1:33363..33464 -
Alignment locationCM002475.1:33159..33253 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22827.1
Productzinc finger protein
Orig transcript idgnl|cribi|Naga_100491g1.7064.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:34134..34271 -
CM002475.1supercontigCM002475.1:33909..33988 -
CM002475.1supercontigCM002475.1:33584..33762 -
CM002475.1supercontigCM002475.1:33363..33464 -
CM002475.1supercontigCM002475.1:33159..33253 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0043240Fanconi anaemia nuclear complex
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR026848Fancl
IPR019162FancL_WD-rpt_cont_dom
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|585103460|gb|EWM22827.1| (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 405.986 bits (1042), Expect = 2.292e-143
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEVDAVGFV 197
            MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEVDAVGFV
Sbjct:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEVDAVGFV 197          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|857978373|emb|CEO95787.1| (hypothetical protein PBRA_004500, partial [Plasmodiophora brassicae])

HSP 1 Score: 116.701 bits (291), Expect = 9.982e-27
Identity = 65/188 (34.57%), Postives = 98/188 (52.13%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPIS 188
            ++D+D H WV+    +   R SR RR+ +    S ++ I+P +P++     F+G E+V+     RL   +  WDT+RMPR NLE IL   FP  P          G +  +  EC ICY+    DG   +R       CE+ RC R +H+ CL +WLQ++P  +       S +TL G+CP+C  P+S
Sbjct:  554 LEDIDAHCWVI--EPDHATRASRSRRIAIGQHCSILVDIEPESPFRVCDCRFLGAESVVNPLRERLNRDLDRWDTSRMPRVNLERILSISFPGKP--------APGAQDEFQLECGICYSVS-RDGVVADR------VCEDARCGRPFHNQCLFEWLQSIPSSRQ------SFSTLFGACPYCSAPLS 718          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|545374931|ref|XP_005651697.1| (hypothetical protein COCSUDRAFT_64092 [Coccomyxa subellipsoidea C-169] >gi|384253679|gb|EIE27153.1| hypothetical protein COCSUDRAFT_64092 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 113.235 bits (282), Expect = 2.074e-26
Identity = 71/196 (36.22%), Postives = 98/196 (50.00%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAP-YKPSHVEFVGPEAVIGAWTRRLYAGIGD-WDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRL------GDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPIS 188
            +DDLDR AWV+    E+       RR+ L    S ++++DP  P  +P  + F+G EA       RL A     WD  R+PR+NLE +L    P   T +     G+         CCICYAYRL      G GS+   G++P  +C N RC R +H  CLR+WL  LP  +       S  T+ G CP+C +PI+
Sbjct:  207 LDDLDREAWVL--EPEKPTPADAHRRIALGGHCSLLLELDPARPRARPPDLRFLGSEAAAAPMRTRLRAADAPPWDPGRLPRENLERLLQMKLPTRSTSAQDDISGD---------CCICYAYRLPPAQPPGAGSAT-LGEVPDQSCGNPRCARPFHGRCLREWLLALPTSR------RSFNTVFGECPYCSQPIT 384          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|831788456|ref|XP_012758752.1| (hypothetical protein SAMD00019534_013310 [Acytostelium subglobosum LB1] >gi|735859384|dbj|GAM18156.1| hypothetical protein SAMD00019534_013310 [Acytostelium subglobosum LB1])

HSP 1 Score: 108.612 bits (270), Expect = 1.250e-24
Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDW---DTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLE 190
            M+++DR  WV+    E  +R    RR+ L    S  I ++PL+P       F+GPE  +    ++L + +  W   D + +   N +A+L   FP          K     + ++ EC ICY++RLG       G IP + C N RC++ +H  CL +WL++LP+V        S  TL GSCP+C +PIS++
Sbjct:  207 MEEIDRMTWVL--EPEHPQRSDTARRIALGNNCSLSIDVNPLSPLTFPDCRFLGPERAVAPLRQKLNSNLSKWRPLDPSLL--GNFQALLEMEFPV---------KQVSNISDFIIECSICYSHRLGGD-----GTIPDIICNNARCQKQFHHSCLFEWLRSLPNVNH------SFDTLFGSCPYCSDPISVK 375          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|260831222|ref|XP_002610558.1| (hypothetical protein BRAFLDRAFT_57071 [Branchiostoma floridae] >gi|229295925|gb|EEN66568.1| hypothetical protein BRAFLDRAFT_57071 [Branchiostoma floridae])

HSP 1 Score: 107.457 bits (267), Expect = 2.081e-24
Identity = 63/193 (32.64%), Postives = 96/193 (49.74%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEVDA 193
            M++LD+  WV+    E+   +   RR+ L   AS  I +DP  P       F+G + VI    + L A +  WD  +    NL+ +LG  FP+P          E +  A    C ICYAYRLG+       +IP   C++ RC R +H+ CL +WL+ LP  +M      S   + G CP+C +PI++++ A
Sbjct:  188 MEELDKSTWVL--EPEKPSCKDTVRRIALGNNASVQITVDPAHPRMLPECRFLGADHVINPIKQSLNANLHCWDPRQTLLPNLQNVLGVDFPSP-----ANSSKEDFNMA----CSICYAYRLGE-------EIPDRACDDPRCSRPFHATCLIEWLRALPSTRM------SFNVIFGECPYCSKPITVKMTA 356          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|552846036|ref|XP_005851512.1| (hypothetical protein CHLNCDRAFT_19195, partial [Chlorella variabilis] >gi|307111175|gb|EFN59410.1| hypothetical protein CHLNCDRAFT_19195, partial [Chlorella variabilis])

HSP 1 Score: 102.834 bits (255), Expect = 8.574e-24
Identity = 63/197 (31.98%), Postives = 93/197 (47.21%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYK-PSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSK-----ERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEV 191
            +DDLD  AWV+   +    R    RR+ L    S  + +DP  P+  P    F+G +A +    +RL+   G W   R+ R+NLEA+LG   P        G   E   A    +C ICYAYRL     +     E G+ P + C+N  C + +H  CL +WL +    +       S  TL G+CP+C  PI+++ 
Sbjct:   24 LDDLDAQAWVIEPTAAP--RSVVYRRIALGHHVSLALTLDPAQPWALPLDCRFMGSDAAVAPLRQRLHDNRGCWQAGRLLRENLEAVLGVALP-----QRQGADAEDASA----DCAICYAYRLPPAEGQLPAGGEEGESPDINCDNAACGKPFHRRCLVEWLNSDTSTRQ------SFNTLFGACPYCSAPITVKA 203          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|1126226428|ref|XP_019647647.1| (PREDICTED: E3 ubiquitin-protein ligase FANCL-like [Branchiostoma belcheri])

HSP 1 Score: 103.605 bits (257), Expect = 8.041e-23
Identity = 60/191 (31.41%), Postives = 91/191 (47.64%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEV 191
            M++LDR  WV+      +R     RR+ L   AS  I +DP  P       F+G + VI    + L   +  WD  +    NL+ +L   FP+P          E +  A    C ICYAYRLG+       +IP   C++ RC R +H+ CL +WL+ LP  +M      S   + G CP+C + I++++
Sbjct:  201 MEELDRSTWVLEPEKPSYR--DTVRRIALGNNASVQITVDPAHPRMLPECRFLGADHVINPMKQSLNTNLHYWDPGQTLLANLQNVLEVEFPSP-----ANTSKEDFNLA----CSICYAYRLGE-------EIPDKACDDPRCSRPFHATCLIEWLRALPSTRM------SFNVIFGECPYCSKSITVKM 367          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|961073620|ref|XP_014786459.1| (PREDICTED: E3 ubiquitin-protein ligase FANCL-like [Octopus bimaculoides] >gi|918335768|gb|KOF97770.1| hypothetical protein OCBIM_22028540mg [Octopus bimaculoides])

HSP 1 Score: 103.605 bits (257), Expect = 8.240e-23
Identity = 59/191 (30.89%), Postives = 93/191 (48.69%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEV 191
            M+++D+  WV+    E+    +  RR+ L   +S  +  DP  P       F+G E+V+    + L A +  WD      QNLE +L   FP+P        K E     ++ EC ICY+YRLG        ++P   CE+ +C + YH  CL +WL+TLP  +       S   + G CP C++P+S+ +
Sbjct:  197 MEEIDQKTWVL--EPEKPTYSATFRRIALSPNSSLQVIFDPDEPQNFVQCHFIGAESVVDPLKKNLNANLQKWDMGINVLQNLENLLEIDFPSP-----AFTKKE----EFLGECGICYSYRLG-------MELPCKVCESAQCGQPYHQSCLYEWLKTLPSSRY------SYNMVFGECPICLKPLSVTI 363          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|595440432|gb|EXX53335.1| (hypothetical protein RirG_244900 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 102.834 bits (255), Expect = 1.361e-22
Identity = 61/192 (31.77%), Postives = 85/192 (44.27%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEVD 192
            +DD+D + WV+    ++ +R    RR+ L    S  IK+D   P K       G E+ I      +     +WD     RQNLE IL   FP+P   SD           +   C ICYAYRL D        IP  TC N +C + +H VCL +WL+ +P        L       G CP+C + I L ++
Sbjct:  196 LDDIDANTWVL--EPDKPKRSDMSRRIALGNHCSLFIKLDEFNPKKLCDYTLFGAESFITPLRTNIAKNFNNWDLLLSIRQNLEKILEINFPSPEESSD-----------FNVACGICYAYRLDDV-------IPDQTCSNAKCGQPFHQVCLYEWLRAIPSTTQTFNRLR------GDCPYCNDTILLIIN 361          
BLAST of EWM22827.1 vs. NCBI_GenBank
Match: gi|585641755|ref|XP_006881087.1| (PREDICTED: E3 ubiquitin-protein ligase FANCL-like [Elephantulus edwardii])

HSP 1 Score: 103.219 bits (256), Expect = 1.662e-22
Identity = 63/194 (32.47%), Postives = 94/194 (48.45%), Query Frame = 0
Query:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPPTHSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTT---LLGSCPFCIEPISLEV 191
            MD++D   WV+    E   R +  RR+ L   AS  I +DP  P  P    F+G + VI     +L   I  WD    P QNL+ +L   FPA         +    ++ +  +C ICYA++L        G IP   C+N +C + +H +CL +WL         RG LTSR +   + G CP+C +PI+L++
Sbjct:  262 MDEIDEKTWVL--EPENPTRSATARRIALGNNASVNIDVDPRHPTMPPECYFLGADHVIKPLGIKLSKNIHLWDPENTPLQNLKDVLEIDFPA---------RSILEKSDFTMDCGICYAFQLD-------GAIPDQVCDNPQCGQPFHQICLYEWL---------RGLLTSRQSFNIIFGECPYCSKPITLKM 428          
The following BLAST results are available for this feature:
BLAST of EWM22827.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103460|gb|EWM22827.1|2.292e-143100.00zinc finger protein [Nannochloropsis gaditana][more]
gi|857978373|emb|CEO95787.1|9.982e-2734.57hypothetical protein PBRA_004500, partial [Plasmod... [more]
gi|545374931|ref|XP_005651697.1|2.074e-2636.22hypothetical protein COCSUDRAFT_64092 [Coccomyxa s... [more]
gi|831788456|ref|XP_012758752.1|1.250e-2432.12hypothetical protein SAMD00019534_013310 [Acytoste... [more]
gi|260831222|ref|XP_002610558.1|2.081e-2432.64hypothetical protein BRAFLDRAFT_57071 [Branchiosto... [more]
gi|552846036|ref|XP_005851512.1|8.574e-2431.98hypothetical protein CHLNCDRAFT_19195, partial [Ch... [more]
gi|1126226428|ref|XP_019647647.1|8.041e-2331.41PREDICTED: E3 ubiquitin-protein ligase FANCL-like ... [more]
gi|961073620|ref|XP_014786459.1|8.240e-2330.89PREDICTED: E3 ubiquitin-protein ligase FANCL-like ... [more]
gi|595440432|gb|EXX53335.1|1.361e-2231.77hypothetical protein RirG_244900 [Rhizophagus irre... [more]
gi|585641755|ref|XP_006881087.1|1.662e-2232.47PREDICTED: E3 ubiquitin-protein ligase FANCL-like ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7870rna7870Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications