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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1123292..1125290 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03870.1 vs.
Match: EWM27414.1 (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana]) HSP 1 Score: 309.3 bits (791), Expect = 1.200e-80 Identity = 168/226 (74.34%), Postives = 185/226 (81.86%), Query Frame = 0
Query: 49 MVIRRPCFFLPLLLAGAAIISPSLAFLPPSTPPPPASSSSSFSSTATIISAEIRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDDGMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKATSTGSSSQKPLEEDDADLFEDGEDV 275
M+IR C L ++A AA+ S AFLPP TPPPP + F A L+ + LPSAALC GA PPQP+ AFGEDIAAKVQKSL EDTTKKYT+DGMDLVETLK+RTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVM+KDGQYVLLTE++Y TLK EGKIVGRDFVVDY+ SAPAAVEAP++EEEDKKATSTGSSSQK LEEDDADLFEDG+ V
Sbjct: 1 MLIRSYCAALSFIVA-AALFSSVFAFLPPPTPPPPTPKVTQFKP---YFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03870.1 ID=NO09G03870.1|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp CGTCCTTTGGCATGATTCACCTGTGCATGTGTGCGTGGGTCGTGGGTTAG AACAGGGTTTGGGAAGGAGGAAAGGGGCAGAGACGTCCAACAGCGATAAG AGCGAACGGTCGAGCCCAAGCGCTGCTGCAACTTAGGGGCGACTGCAGCT AGCAGCATCCATCGCCCAACGTACGTTGGTCTTGTTGTTGTGGTCGATAT AAAGAGCGGCATGTCGGACGCGGCCGTGTATGCACGGTCAGCAAGGTTGC AACCTCCTCCCTTCCTCAGGAGGGCTCTATCTCCTCTCCCCCTCCCCCCC CACTTTCTCATCCCCTCTCACCATCCTCCGTCCCACTCAACATGTACACA CAGCCAACCCCCTAACCACTACTATGGTAATTAGACGGCCTTGTTTCTTC CTACCCCTCCTGCTGGCCGGGGCGGCCATCATCAGCCCCTCCTTAGCATT CTTACCCCCATCCACCCCTCCTCCCCCCGCCTCCTCCTCCTCCTCCTTCT CCTCCACTGCCACCATCATTTCCGCCGAAATCCGTCGTCTCCTCCCCCTA TTTCTCCCCTCGGCTGCCTTGTGTCTAGGTGCCACCCCGCCACAGCCGTC TTACGCTTTTGGGGAAGACATCGCGGCCAAGGTGCAGAAGTCCCTAAAGG AGGACACGACCAAGAAGTACACGGACGACGGCATGGACCTCGTCGAGACC CTGAAAAAACGCACCATCCAGAACAAGGCCAAGAACGACCGTATTTTGAT GGAGAAAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCGACA AGTTCATCCCGGTGATGCGGAAGGACGGGCAGTACGTGCTCCTAACCGAG GAGGAGTACAAGACCCTCAAGAACGAGGGCAAGATCGTCGGCAGGGATTT CGTCGTCGATTATGAAGTGGCAAGCGCCCCGGCAGCCGTTGAGGCGCCAA TTGTGGAAGAGGAAGACAAGAAGGCCACATCCACAGGATCATCGTCTCAG AAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGAGGACGGCGAAGACGT CGTGTAGAGGGAGGGAAGGAGGGAGAGAAGGAGGGAGGGAGGGAAGGAGG GAAGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGA back to topprotein sequence of NO09G03870.1 >NO09G03870.1-protein ID=NO09G03870.1-protein|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp MHGQQGCNLLPSSGGLYLLSPSPPTFSSPLTILRPTQHVHTANPLTTTMV IRRPCFFLPLLLAGAAIISPSLAFLPPSTPPPPASSSSSFSSTATIISAE IRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDD GMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDG QYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKAT STGSSSQKPLEEDDADLFEDGEDVV* back to topmRNA from alignment at chr9:1123292..1125290+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03870.1 ID=NO09G03870.1|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp|location=Sequence derived from alignment at chr9:1123292..1125290+ (Nannochloropsis oceanica) CGTCCTTTGGCATGATTCACCTGTGCATGTGTGCGTGGGTCGTGGGTTAG
AACAGGGTTTGGGAAGGAGGAAAGGGGCAGAGACGTCCAACAGCGATAAG
AGCGAACGGTCGAGCCCAAGCGCTGCTGCAACTTAGGGGCGACTGCAGCT
AGCAGCATCCATCGCCCAACGTACGTTGGTCTTGTTGTTGTGGTCGATAT
AAAGAGCGGCATGTCGGACGCGGCCGTGTATGCACGGTCAGCAAGGTTGC
AACCTCCTCCCTTCCTCAGGAGGGCTCTATCTCCTCTCCCCCTCCCCCCC
CACTTTCTCATCCCCTCTCACCATCCTCCGTCCCACTCAACATGTACACA
CAGCCAACCCCCTAACCACTACTATGGTAATTAGACGGCCTTGTTTCTTC
CTACCCCTCCTGCTGGCCGGGGCGGCCATCATCAGCCCCTCCTTAGCATT
CTTACCCCCATCCACCCCTCCTCCCCCCGCCTCCTCCTCCTCCTCCTTCT
CCTCCACTGCCACCATCATTTCCGCCGAAATCCGTCGTCTCCTCCCCCTA
TTTCTCCCCTCGGCTGCCTTGTGTCTAGGTGCCACCCCGCCACAGCCGTC
TTACGCTTTTGGGGAAGACATCGCGGCCAAGGTAAGGCAAATGGGAGGCG
GAGGCGGGGAGGGACGAACGACGCACAGGAGAGGACATTGAGACATTGAC
ATCCCTGGAGCTCGCCGTCGAGTACCACCTACGTGTGCCTATTCTCCATG
TGTGTACCTACCCATCACCAGTGTTTCACGTCTTTTTCTTCTCTACTGCC
TCTGCACAGGTGCAGAAGTCCCTAAAGGAGGACACGACCAAGAAGTACAC
GGACGACGGCATGGACCTCGTCGAGACCCTGAAAAAACGGTGCGTAGCTT
GGAAACGAGAGGATGGAGGAGCTTTAGAAGAGGGGGAAATCGAAGAATAA
ATGCGTGCCTTGGACGATTGGTTCAGATTCTCGTGCTCTTGCCCCGAACA
CGCGAGATTGTCCGTCCTGTCGAGAAGAGGGCCTCTACACAATTCCTGAA
CCATTTTCCCCCCGCCCTCCCTCACCCCCTCTCTCCCTGTCCCTCCCGTC
TTATCCCCTTGCAGCACCATCCAGAACAAGGCCAAGAACGACCGTATTTT
GATGGAGAAAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCG
ACAAGTAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGCAGGGGACGAAG
TACCCAGAAGTGAGAGATCCCCACGCACAACTCCACCTCCCCCCCTCCCT
CCCTCCCTCGCTCTGGTAGGTTCATCCCGGTGATGCGGAAGGACGGGCAG
TACGTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGGGCAA
GATCGTCGGCAGGGATTTCGTCGTCGATTATGAAGTACGTCCCTCTCTTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCATCTTCTTCAATTCTTCCTC
CCCTTAATACCTACCTACCTACCTACCTACCTACCTCCCTCCCTCCCAGG
TGGCAAGCGCCCCGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGAC
AAGAAGGCCACATCCACAGGTAGGCAGGCAGGCAAGGAGGGAAGGAGGGA
GGGAGGGACAGGAGGGGGGGAGGGAGGGGAGGAAGACAATGCCAGATCCA
CAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGACC
CATTGGTCAAAGAGAAGGGCGGGGAGGGAGGGAGGAAGAGGGGAGGAAGG
GAGGGAGGACGAAGAACTCATTTCTCTCTTGATGTTTGTCGTCCCGTCCA
GGATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGA
GGACGGCGAAGACGTCGTGTAGAGGGAGGGAAGGAGGGAGAGAAGGAGGG
AGGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGA back to topCoding sequence (CDS) from alignment at chr9:1123292..1125290+ >NO09G03870.1 ID=NO09G03870.1|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr9:1123292..1125290+ (Nannochloropsis oceanica) ATGCACGGTCAGCAAGGTTGCAACCTCCTCCCTTCCTCAGGAGGGCTCTA TCTCCTCTCCCCCTCCCCCCCCACTTTCTCATCCCCTCTCACCATCCTCC GTCCCACTCAACATGTACACACAGCCAACCCCCTAACCACTACTATGGTA ATTAGACGGCCTTGTTTCTTCCTACCCCTCCTGCTGGCCGGGGCGGCCAT CATCAGCCCCTCCTTAGCATTCTTACCCCCATCCACCCCTCCTCCCCCCG CCTCCTCCTCCTCCTCCTTCTCCTCCACTGCCACCATCATTTCCGCCGAA ATCCGTCGTCTCCTCCCCCTATTTCTCCCCTCGGCTGCCTTGTGTCTAGG TGCCACCCCGCCACAGCCGTCTTACGCTTTTGGGGAAGACATCGCGGCCA AGGTGCAGAAGTCCCTAAAGGAGGACACGACCAAGAAGTACACGGACGAC GGCATGGACCTCGTCGAGACCCTGAAAAAACGCACCATCCAGAACAAGGC CAAGAACGACCGTATTTTGATGGAGAAAACTTTCCTCAACTCGGAGGCAG GCATCTACGGGCCCTTCGACAAGTTCATCCCGGTGATGCGGAAGGACGGG CAGTACGTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGGG CAAGATCGTCGGCAGGGATTTCGTCGTCGATTATGAAGTGGCAAGCGCCC CGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGACAAGAAGGCCACA TCCACAGGATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTT GTTCGAGGACGGCGAAGACGTCGTGTAG back to top
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