NO09G03030.1, NO09G03030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03030.1
Unique NameNO09G03030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1400
Alignment locationchr9:884589..886608 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:884589..886608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03030.1 vs.
Match: XP_005852692.1 (protein rer1a [Nannochloropsis gaditana CCMP526]; EKU23140.1 protein rer1a [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.2 bits (827), Expect = 5.400e-85
Identity = 154/178 (86.52%), Postives = 164/178 (92.13%), Query Frame = 0 
Query:    2 MESDGDPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAGGGEKR 180
            ME+ G+ S VEQ  VS QRKWQHILD+STV+VGLRWVIF  ML LYA+RVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPT E EEYRPFARRLPEFKFWYQCAKATW+AF MTFF+FFDVPVYWPILLLYF+SLF+LTMKRQIRHMIKHRYVPWSN KA+YAG GEKR
Sbjct:    1 MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKR 178
The following BLAST results are available for this feature:
BLAST of NO09G03030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852692.15.400e-8586.52protein rer1a [Nannochloropsis gaditana CCMP526]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03030NO09G03030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03030.1NO09G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03030.1.cds1NO09G03030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03030.1.cds2NO09G03030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03030.1 ID=NO09G03030.1|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
AGGTCAAAGTCATTTCCCCGTCGTTGTCGTCGTAGACCTTCAAGCCTACT
TATAGGTTGCTCTGGGTGTCGTGCCCTGAAAAGTCTCCCTCCCAGAGAAG
GGCTTCTCTCGCTCAAAAGCGTTGCTTCGTGAGCGGAACCCTTGCATCTC
TGCACCACCTACCCACACGTAAGCCCCGCGCCGCGCGACAGACGCCTGTA
CAATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTG
TCCCTGCAAAGAAAATGGCAACACATCCTGGATCGCTCCACCGTGTACGT
CGGCCTTCGTTGGGTTATCTTTGTTGTCATGCTCGGCCTATACGCCTTAC
GTGTATTCTACATTAATGGCTGGTTCATTGTGACCTACGGCTTGGGTATC
TACCTCCTGAACAACTTTATCGGATTCCTTTCCCCGCAGATGGACCCAGA
ATCAGAAGGTCCCTTACTACCAACGAATGAGAGGGAAGAATATCGACCGT
TTGCCCGACGGTTGCCGGAATTTAAATTTTGGTACCAATGCGCGAAGGCG
ACATGGGTGGCATTTGGAATGACGTTTTTTGATTTTTTTGACGTGCCGGT
TTATTGGCCGATTCTCTTGTTGTACTTTATAAGTCTGTTTGTATTGACGA
TGAAGAGACAGATTCGGCATATGATCAAACATCGGTACGTGCCGTGGAGT
AACGGCAAGGCCAAGTATGCGGGAGGGGGAGAGAAGCGGATGGCAGCGAA
GTAAGTGCGGATAGCGTGGGAGGTGGTGAGGCGTTAGACATAGAAAGAGA
AAGGGAGACGATGGTGGACATGGCGCTGGAGGTTTGAGACTTACTCTCTC
TTTCCCTCCTGAACATGTGTGTGTGTACGCGCGCGCGTGCGTGTATGTAC
GATAGATTCAAAACCAGAAAAAATGTTTTGTTGGGCGTTATGGTTTGCTC
CCTGGACAAATGAAACAGAAAGGGAAGCAGTCGATCCTCCCCTTTGCTCT
GTTGGCTCCTTGACAACAGACAGCGGTAACACGTTCGCGAGAAGGATGAT
AGAAAATCCGCCCATGCTTTGGACAAAAGAGCGACAGGTTAACCGACTCC
AGGCGTTCAAAAGCCAACGGAAGGATGTTGAGAGAAATAAGGAAGGGAAA
TGATGGAGGGAGAAGTCGAGGGAGCAGGGCCACAGACGGAAAAACAAGAA
ACGTCTCGACGCTTCCCGGCGAGACGTTTCTGCGGCCGATGCCATGGGAG
GGGGGGAGGGAGGGGGAAGGCCATTACCTAGGCCGTTCCCCTTCATCATC
CTCCCCACGAAGGACCAACCACATGACAACACCATCGATACACGCAATAA
GTCAACAAGCAAACATGGCTGCGACCGACAAACACCCGCACCTTGCATTA
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protein sequence of NO09G03030.1

>NO09G03030.1-protein ID=NO09G03030.1-protein|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MMESDGDPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALR
VFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPF
ARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTM
KRQIRHMIKHRYVPWSNGKAKYAGGGEKRMAAK*
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mRNA from alignment at chr9:884589..886608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03030.1 ID=NO09G03030.1|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp|location=Sequence derived from alignment at chr9:884589..886608- (Nannochloropsis oceanica)
AGGTCAAAGTCATTTCCCCGTCGTTGTCGTCGTAGACCTTCAAGCCTACT
TATAGGTTGCTCTGGGTGTCGTGCCCTGAAAAGTCTCCCTCCCAGAGAAG
GGCTTCTCTCGCTCAAAAGCGTTGCTTCGTGAGCGGAACCCTTGCATCTC
TGCACCACCTACCCACACGTAAGCCCCGCGCCGCGCGACAGACGCCTGTA
CAATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTG
TCCCTGCAAAGGTACGTGCTTTATTTACTCTAGGTCTTGTGTATGGGTGG
GTGGACTGCGTGGGTGGGTCATGTGGCGGGTGGTGTACGGGTGAATGTGT
GTCTGGTGCTTGAAAAGCCTCGCTGCTCATCATTGTCGCTATCTGGATAT
GGTGTAATGGCGTTAGGAAATGCGTGGGTGAGAAGATGCTCGATGGATTG
ATGGCATGTGTGAGAGGGAGAGTTACTAAGTCTCTTCCCGCTTTACCCAC
CATGCTCTCGGTGAAACGTTGTGCAATGCATGTTTACCTTTGAGATATGC
TCGTAAGAGTATGTGTGCATATTCCCGTGCGTTTGATGCGATGATTTCTC
TTGTCGGTAGATAGGGCTGTGCATCATTGACATCTTGACGGACGGAACCA
TCAACCATTGATCACCGGATGCGCTTTCACCACCCCATCACCAACCCACT
CTCGCCCTTCCAACCTATCTTCAGTCTAACAATGACCATACACAGTTTGA
AAATTTCTCCACACACCATGTCAGCCCTTGGATGATCCTCTTGGTGGTCG
TGCTCACTATGTTCACAGCGCCTTTCGCGAGTTCAAAAATTGCTTAACAA
AACCCCAATTTTTCCCCTCACGCGAACACAGAAAATGGCAACACATCCTG
GATCGCTCCACCGTGTACGTCGGCCTTCGTTGGGTTATCTTTGTTGTCAT
GCTCGGCCTATACGCCTTACGTGTATTCTACATTAATGGCTGGTTCATTG
TGACCTACGGCTTGGGTATCTACCTCCTGAACAACTTTATCGGATTCCTT
TCCCCGCAGATGGACCCAGAATCAGAAGGTCCCTTACTACCAACGAATGA
GAGGGAAGAATATCGACCGTTTGCCCGACGGTTGCCGGAATTTAAATTTT
GGTACCAATGCGCGAAGGCGACATGGGTGGCATTTGGAATGACGTTTTTT
GATTTTTTTGACGTGCCGGTTTATTGGCCGATTCTCTTGTTGTACTTTAT
AAGTCTGTTTGTATTGACGATGAAGAGACAGATTCGGCATATGATCAAAC
ATCGGTACGTGCCGTGGAGTAACGGCAAGGCCAAGTATGCGGGAGGGGGA
GAGAAGCGGATGGCAGCGAAGTAAGTGCGGATAGCGTGGGAGGTGGTGAG
GCGTTAGACATAGAAAGAGAAAGGGAGACGATGGTGGACATGGCGCTGGA
GGTTTGAGACTTACTCTCTCTTTCCCTCCTGAACATGTGTGTGTGTACGC
GCGCGCGTGCGTGTATGTACGATAGATTCAAAACCAGAAAAAATGTTTTG
TTGGGCGTTATGGTTTGCTCCCTGGACAAATGAAACAGAAAGGGAAGCAG
TCGATCCTCCCCTTTGCTCTGTTGGCTCCTTGACAACAGACAGCGGTAAC
ACGTTCGCGAGAAGGATGATAGAAAATCCGCCCATGCTTTGGACAAAAGA
GCGACAGGTTAACCGACTCCAGGCGTTCAAAAGCCAACGGAAGGATGTTG
AGAGAAATAAGGAAGGGAAATGATGGAGGGAGAAGTCGAGGGAGCAGGGC
CACAGACGGAAAAACAAGAAACGTCTCGACGCTTCCCGGCGAGACGTTTC
TGCGGCCGATGCCATGGGAGGGGGGGAGGGAGGGGGAAGGCCATTACCTA
GGCCGTTCCCCTTCATCATCCTCCCCACGAAGGACCAACCACATGACAAC
ACCATCGATACACGCAATAAGTCAACAAGCAAACATGGCTGCGACCGACA
AACACCCGCACCTTGCATTA
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Coding sequence (CDS) from alignment at chr9:884589..886608-

>NO09G03030.1 ID=NO09G03030.1|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr9:884589..886608- (Nannochloropsis oceanica)
ATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTGTC
CCTGCAAAGAAAATGGCAACACATCCTGGATCGCTCCACCGTGTACGTCG
GCCTTCGTTGGGTTATCTTTGTTGTCATGCTCGGCCTATACGCCTTACGT
GTATTCTACATTAATGGCTGGTTCATTGTGACCTACGGCTTGGGTATCTA
CCTCCTGAACAACTTTATCGGATTCCTTTCCCCGCAGATGGACCCAGAAT
CAGAAGGTCCCTTACTACCAACGAATGAGAGGGAAGAATATCGACCGTTT
GCCCGACGGTTGCCGGAATTTAAATTTTGGTACCAATGCGCGAAGGCGAC
ATGGGTGGCATTTGGAATGACGTTTTTTGATTTTTTTGACGTGCCGGTTT
ATTGGCCGATTCTCTTGTTGTACTTTATAAGTCTGTTTGTATTGACGATG
AAGAGACAGATTCGGCATATGATCAAACATCGGTACGTGCCGTGGAGTAA
CGGCAAGGCCAAGTATGCGGGAGGGGGAGAGAAGCGGATGGCAGCGAAGT
AA
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Synonyms
Publications