NO09G02550.1, NO09G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02550.1
Unique NameNO09G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2881
Alignment locationchr9:755459..758670 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:755459..758670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G02550.1 vs.
Match: EWM27550.1 (n-alpha-acetyltransferase catalytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 295.8 bits (756), Expect = 1.600e-76
Identity = 184/309 (59.55%), Postives = 210/309 (67.96%), Query Frame = 0 
Query:    3 QQQQQPGEDASLATRIRYMAYSSEKQLGAIMALVDRDLSEPYSIFTYRYFLCGWPDLCILAYIDDDPTR--TAKDRVDSIKTKSGEGGDW-----HGTLVGVIVGKADNEGSTDPKGLCGYIAMLAVETSYRRAGIGRKLVGRAVDRMVEIGCKEVALEAEVTNKGALHLYERQGFAREERLFKYYLNGVDAFRLKLWLAGGGEDVGGGEEDGGHNKIHQHSPGEEEGEGCCDDRDHYHHHHHEKEGEEKEKEEYAHGLPRGGHQHSHDGGGSCCGGHQHGEEDENDHIATQQSLALLSLETRMVGAAR 305
            Q  ++   ++SL  RI+Y+ YSSEKQLGAIMALVDRDLSEPYSIFTYRYFLCGWPDLC LAYIDDD +    A D+  S+K  S E  D      H TLVGVIVGKADNEGS D KGLCGYIAMLAVETSYRRAGIGRKLV RAV RMVEIGC+EVALEAEVTN GALHLYERQGFAREERL KYYLNGVDAFRLKLWL    ED      DG  +    H  G+     CC  ++  H+      G+  +K   AHG+       S  G  +C GG +  E+ + + + T+Q+L  LSLE R V   R
Sbjct:    6 QHNREQKNESSLEARIKYVGYSSEKQLGAIMALVDRDLSEPYSIFTYRYFLCGWPDLCFLAYIDDDASSKAVAGDQY-SLKKASAESMDRDEYNEHRTLVGVIVGKADNEGSQDSKGLCGYIAMLAVETSYRRAGIGRKLVSRAVARMVEIGCQEVALEAEVTNIGALHLYERQGFAREERLLKYYLNGVDAFRLKLWLK--MEDDFIMPHDGRQS---MHESGQ-----CCGGKNDQHNEQRHPHGD--KKAVLAHGIEA---NDSPTGPPNCSGGRE--EDIDGNIMVTRQNLTSLSLEGRHVHPQR 296
The following BLAST results are available for this feature:
BLAST of NO09G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27550.11.600e-7659.55n-alpha-acetyltransferase catalytic subunit [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02550NO09G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02550.1NO09G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02550.1.cds1NO09G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02550.1.cds2NO09G02550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02550.1.cds3NO09G02550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02550.1 ID=NO09G02550.1|Name=NO09G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2881bp
GGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGACCACAGGTAGGGTTGCC
ACTCCTTTTTGCTGAGTACGACGCTGCAAAGTCTCAAGGCCTCACAATCG
TACTCTCGTTGGCCTCCGCAAGGGGTCTCGGAGAAATGACGGAGCAACGG
TCGAGGCAGACAGTTGAGGAAGTCGGTGAGGAACTTCTCTTTCCTCACCT
TGTCCTTCCCCTTCACGTTTTGCACGATCCGAGACCAGTCGCGCGCTACT
GCCAAGACATAAGAGCAAGTCCAAATCCTCAATGACTGCACTCGCATTTG
GTGTACCTTCAGCCGTTCAGTCGTACTATCAATGCTCCTGCTGCTGGTGG
TTGTCCTGCTATTGGTCTTCATGGCCTTGTCGAGGACGTCTAGCAATGTT
TTGATTACTTTCTTATCCGTTAGCCCCGCTGGACTCAGCAGGGGCAACAA
GCGCTCAACTACTCGCACAGCTAAAAGCAAGTCGTGATTGGCCAGGTGTT
CTAATACCTCGCTTTGGAAGTGCTCTCGAATAAAGCTACAATAGCTCCCA
TCACTCGGCTCCTTGCCTGGCACCGGATCACGCGCCAGTAGAGGGACAGG
AAAGGTCGATTGCGCCTGCGTTAACGCCGTCACGGCCATGTCTACTCCCG
CCTCGTTCACACTCTCTGTCATGCCTCTTTCTCCTTCCTCGTGACGCCTT
CCACCACAAGTAATACGTCCTCCCTTCAAAACGTAAAGCAAAATGGCCTT
GAGCAGCCCACGGGCTTCGCCTGCACATCCTGGGTTGGTTGCCAGACGAG
GTAGCAATTTGGAGGAGACTAGCAAACCCTGCACGGGCAAGAAAGGTGCA
AAGTCACCAAATCTTCCATCGACAGCTAAGCGTATGGCCGTCATAACTTT
TTGAAGGAGGGATTCAGAGAGGTTTGAGAGATCGCACACTTGATAGGCGA
TTGTTGTTAGTAGGGAGTTGGCCAGGTCTGCCAACGGCATCTGCTCATGC
CCTGCCGCCGTGTTGTAACCCTCACGCACCGTAAGCTGCTCCTGTACCTT
TTCTATAATTTCCACGAGCAAACTCAAAACTTTCTCATCTGCACGATTGT
TATTGGAGAGCTGCGCGCAACATCGCTTGTCGTTGAGAAGCAGGGTCAGT
AGGGGCAGAGCGGGCGAGACTGAAGCCGCGAAGTCAGCGGGCGAGGCAAC
GGCGGGACGCAAGCTCTCGACAATGTGGTCCACCACGGCGGCGCCTCGCA
AGGGGATGAAACATTGCAGGTCCTCGGGTGTCTCCTCCTCCCCTGCGGCT
GCTTCCATTTTTTCGTACAAGAATTGGTAGGCCTCGATGCAGGAGTGGCA
GCCCCGATCCTTGATGCCACCGCCCTGACCGCCATCCTCCCCCAGTAGCT
CCCCTAGACATGCCGCTACATTTTCCCAGACCATGGCCTTACTATGTGCA
CGGGAGGGGAGCGTGAGCGTGGTACAACTTGCGTTGAACGTACAAATGAG
GAACTTGGGCCGCGATTCGGGCCGCGATTTTGCTTTGACTTGCTCACAAT
CTCTCCACCACACATATCCACCCGCACACAACCTCTCAGGGACAAAGTTC
AAGAAACGTACCAGCTGCTGAGTGCTTTGATTCTCAATGGGTGCTTGAGT
GGTTTGAAATTTTGGCATTTGATTCCGACGGTCCATCACTCAGCCTCCCA
CCTCCTCTCCTCTTTGCCTGCGGTCGAGAACACACGCTAGTCCAACGACA
CCGCCACAACATCTCACGACATCAACATTGAAAAAGGCACGACAATACCG
ACTATGACGCAGCAACAGCAGCAGCCTGGGGAAGATGCCAGCCTGGCAAC
CCGCATCCGCTACATGGCTTATTCCAGTGAGAAGCAGTTAGGGGCCATCA
TGGCCTTGGTCGACCGGGACTTGTCAGAGCCTTACTCCATTTTCACATAC
CGCTACTTCCTATGCGGGTGGCCTGACCTATGCATCCTTGCGTACATTGA
CGACGACCCTACTAGAACTGCGAAAGATCGAGTTGACAGCATCAAGACCA
AATCTGGAGAAGGGGGCGATTGGCACGGCACGCTCGTGGGGGTGATCGTG
GGCAAGGCAGATAATGAGGGGAGCACGGACCCTAAGGGTTTGTGTGGGTA
TATTGCCATGTTGGCCGTGGAGACGTCTTATCGTCGAGCAGGCATAGGAC
GAAAGCTTGTCGGCCGTGCCGTCGACCGTATGGTGGAAATTGGCTGTAAA
GAAGTTGCACTCGAAGCCGAGGTGACCAATAAAGGAGCTTTGCATTTGTA
TGAAAGACAGGGTTTCGCTAGGGAGGAACGTTTGTTTAAATATTATCTAA
ATGGCGTGGATGCATTTAGGCTTAAGTTGTGGTTGGCCGGGGGTGGGGAG
GATGTTGGAGGGGGGGAGGAGGATGGAGGGCACAATAAAATACACCAGCA
TAGTCCTGGGGAGGAGGAAGGAGAAGGATGTTGCGACGATAGAGATCATT
ATCACCATCATCACCACGAGAAGGAGGGGGAGGAGAAGGAGAAGGAGGAG
TACGCGCACGGACTCCCGCGCGGAGGGCACCAGCACTCCCACGACGGAGG
GGGGAGTTGTTGTGGTGGTCACCAACATGGCGAGGAGGACGAGAACGACC
ATATAGCCACCCAACAGAGTTTAGCATTGTTGAGTCTAGAAACCAGAATG
GTCGGGGCGGCGCGAGTAGCCAAATCGGCAGCGGACGGTGATGCGGCAAG
GGTTCTCGGAGGGGGAGAGGGGGAGATGACATGATGGAAGGCAGAGTGAG
ATACAAAGACGAAAAGCACTATCAAACCCAACTGTCCTTGATACGTCGTT
TTGAGTATGAGTCAAGGGAGGAACACACTCT
back to top

protein sequence of NO09G02550.1

>NO09G02550.1-protein ID=NO09G02550.1-protein|Name=NO09G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MTQQQQQPGEDASLATRIRYMAYSSEKQLGAIMALVDRDLSEPYSIFTYR
YFLCGWPDLCILAYIDDDPTRTAKDRVDSIKTKSGEGGDWHGTLVGVIVG
KADNEGSTDPKGLCGYIAMLAVETSYRRAGIGRKLVGRAVDRMVEIGCKE
VALEAEVTNKGALHLYERQGFAREERLFKYYLNGVDAFRLKLWLAGGGED
VGGGEEDGGHNKIHQHSPGEEEGEGCCDDRDHYHHHHHEKEGEEKEKEEY
AHGLPRGGHQHSHDGGGSCCGGHQHGEEDENDHIATQQSLALLSLETRMV
GAARVAKSAADGDAARVLGGGEGEMT*
back to top

mRNA from alignment at chr9:755459..758670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02550.1 ID=NO09G02550.1|Name=NO09G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3212bp|location=Sequence derived from alignment at chr9:755459..758670+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGACCACAGGTAGGGTTGCC
ACTCCTTTTTGCTGAGTACGACGCTGCAAAGTCTCAAGGCCTCACAATCG
TACTCTCGTTGGCCTCCGCAAGGGGTCTCGGAGAAATGACGGAGCAACGG
TCGAGGCAGACAGTTGAGGAAGTCGGTGAGGAACTTCTCTTTCCTCACCT
TGTCCTTCCCCTTCACGTTTTGCACGATCCGAGACCAGTCGCGCGCTACT
GCCAAGACATAAGAGCAAGTCCAAATCCTCAATGACTGCACTCGCATTTG
GTGTACCTTCAGCCGTTCAGTCGTACTATCAATGCTCCTGCTGCTGGTGG
TTGTCCTGCTATTGGTCTTCATGGCCTTGTCGAGGACGTCTAGCAATGTT
TTGATTACTTTCTTATCCGTTAGCCCCGCTGGACTCAGCAGGGGCAACAA
GCGCTCAACTACTCGCACAGCTAAAAGCAAGTCGTGATTGGCCAGGTGTT
CTAATACCTCGCTTTGGAAGTGCTCTCGAATAAAGCTACAATAGCTCCCA
TCACTCGGCTCCTTGCCTGGCACCGGATCACGCGCCAGTAGAGGGACAGG
AAAGGTCGATTGCGCCTGCGTTAACGCCGTCACGGCCATGTCTACTCCCG
CCTCGTTCACACTCTCTGTCATGCCTCTTTCTCCTTCCTCGTGACGCCTT
CCACCACAAGTAATACGTCCTCCCTTCAAAACGTAAAGCAAAATGGCCTT
GAGCAGCCCACGGGCTTCGCCTGCACATCCTGGGTTGGTTGCCAGACGAG
GTAGCAATTTGGAGGAGACTAGCAAACCCTGCACGGGCAAGAAAGGTGCA
AAGTCACCAAATCTTCCATCGACAGCTAAGCGTATGGCCGTCATAACTTT
TTGAAGGAGGGATTCAGAGAGGTTTGAGAGATCGCACACTTGATAGGCGA
TTGTTGTTAGTAGGGAGTTGGCCAGGTCTGCCAACGGCATCTGCTCATGC
CCTGCCGCCGTGTTGTAACCCTCACGCACCGTAAGCTGCTCCTGTACCTT
TTCTATAATTTCCACGAGCAAACTCAAAACTTTCTCATCTGCACGATTGT
TATTGGAGAGCTGCGCGCAACATCGCTTGTCGTTGAGAAGCAGGGTCAGT
AGGGGCAGAGCGGGCGAGACTGAAGCCGCGAAGTCAGCGGGCGAGGCAAC
GGCGGGACGCAAGCTCTCGACAATGTGGTCCACCACGGCGGCGCCTCGCA
AGGGGATGAAACATTGCAGGTCCTCGGGTGTCTCCTCCTCCCCTGCGGCT
GCTTCCATTTTTTCGTACAAGAATTGGTAGGCCTCGATGCAGGAGTGGCA
GCCCCGATCCTTGATGCCACCGCCCTGACCGCCATCCTCCCCCAGTAGCT
CCCCTAGACATGCCGCTACATTTTCCCAGACCATGGCCTTACTATGTGCA
CGGGAGGGGAGCGTGAGCGTGGTACAACTTGCGTTGAACGTACAAATGAG
GAACTTGGGCCGCGATTCGGGCCGCGATTTTGCTTTGACTTGCTCACAAT
CTCTCCACCACACATATCCACCCGCACACAACCTCTCAGGGACAAAGTTC
AAGAAACGTACCAGCTGCTGAGTGCTTTGATTCTCAATGGGTGCTTGAGT
GGTTTGAAATTTTGGCATTTGATTCCGACGGTCCATCACTCAGCCTCCCA
CCTCCTCTCCTCTTTGCCTGCGGTCGAGAACACACGCTAGTCCAACGACA
CCGCCACAACATCTCACGACATCAACATTGAAAAAGGCACGACAATACCG
ACTATGACGCAGCAACAGCAGCAGCCTGGGGAAGATGCCAGGTATTATTT
CCCCTATATCCTGCCCTAGCCTCCCCACTTGCCCCCTCCTTCATGTCACA
CTTCTCTCCTCTTCACACAAATCTTGACTGCCTGTACACAACAGCCTGGC
AACCCGCATCCGCTACATGGCTTATTCCAGTGAGAAGCAGTTAGGGGCCA
TCATGGCCTTGGTCGACCGGGACTTGTCAGAGCCTTACTCCATTTTCACA
TACCGCTACTTCCTATGCGGGTGGCCTGACCTATGCATCCTTGCGTACAT
TGACGACGACCCTACTAGAACTGCGAAAGATCGAGTTGACAGCATCAAGA
CCAAATCTGGAGAAGGGGGCGATTGGCACGGCACGCTCGTGGGGGTGATC
GTGGGCAAGGCAGATAATGAGGGGAGCACGGACCCTAAGGGTTTGTGTGG
GTATATTGCCATGTTGGCCGTGGAGACGTCTTATCGTCGAGCAGGCATAG
GTATGAAGTACTCTTACTTGTGATAGGTCTAAGGGTGAGCTTGTCATGTC
TATGTGGATCCCAAATGCTGGCGCTCGCCAACAGGGCACTTATCGAGAGG
ATGTCAATCGACAAATTTGTTGATCCGACCACTCGCTTACCCAGAATGTC
ATGTTAGTGAGACGACATATATTGACAGCATTTGCTTAACTCTTTGCCAT
GACTCACCCCAAATCCCCCCCAAAAAAGGACGAAAGCTTGTCGGCCGTGC
CGTCGACCGTATGGTGGAAATTGGCTGTAAAGAAGTTGCACTCGAAGCCG
AGGTGACCAATAAAGGAGCTTTGCATTTGTATGAAAGACAGGGTTTCGCT
AGGGAGGAACGTTTGTTTAAATATTATCTAAATGGCGTGGATGCATTTAG
GCTTAAGTTGTGGTTGGCCGGGGGTGGGGAGGATGTTGGAGGGGGGGAGG
AGGATGGAGGGCACAATAAAATACACCAGCATAGTCCTGGGGAGGAGGAA
GGAGAAGGATGTTGCGACGATAGAGATCATTATCACCATCATCACCACGA
GAAGGAGGGGGAGGAGAAGGAGAAGGAGGAGTACGCGCACGGACTCCCGC
GCGGAGGGCACCAGCACTCCCACGACGGAGGGGGGAGTTGTTGTGGTGGT
CACCAACATGGCGAGGAGGACGAGAACGACCATATAGCCACCCAACAGAG
TTTAGCATTGTTGAGTCTAGAAACCAGAATGGTCGGGGCGGCGCGAGTAG
CCAAATCGGCAGCGGACGGTGATGCGGCAAGGGTTCTCGGAGGGGGAGAG
GGGGAGATGACATGATGGAAGGCAGAGTGAGATACAAAGACGAAAAGCAC
TATCAAACCCAACTGTCCTTGATACGTCGTTTTGAGTATGAGTCAAGGGA
GGAACACACTCT
back to top

Coding sequence (CDS) from alignment at chr9:755459..758670+

>NO09G02550.1 ID=NO09G02550.1|Name=NO09G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr9:755459..758670+ (Nannochloropsis oceanica)
ATGACGCAGCAACAGCAGCAGCCTGGGGAAGATGCCAGCCTGGCAACCCG
CATCCGCTACATGGCTTATTCCAGTGAGAAGCAGTTAGGGGCCATCATGG
CCTTGGTCGACCGGGACTTGTCAGAGCCTTACTCCATTTTCACATACCGC
TACTTCCTATGCGGGTGGCCTGACCTATGCATCCTTGCGTACATTGACGA
CGACCCTACTAGAACTGCGAAAGATCGAGTTGACAGCATCAAGACCAAAT
CTGGAGAAGGGGGCGATTGGCACGGCACGCTCGTGGGGGTGATCGTGGGC
AAGGCAGATAATGAGGGGAGCACGGACCCTAAGGGTTTGTGTGGGTATAT
TGCCATGTTGGCCGTGGAGACGTCTTATCGTCGAGCAGGCATAGGACGAA
AGCTTGTCGGCCGTGCCGTCGACCGTATGGTGGAAATTGGCTGTAAAGAA
GTTGCACTCGAAGCCGAGGTGACCAATAAAGGAGCTTTGCATTTGTATGA
AAGACAGGGTTTCGCTAGGGAGGAACGTTTGTTTAAATATTATCTAAATG
GCGTGGATGCATTTAGGCTTAAGTTGTGGTTGGCCGGGGGTGGGGAGGAT
GTTGGAGGGGGGGAGGAGGATGGAGGGCACAATAAAATACACCAGCATAG
TCCTGGGGAGGAGGAAGGAGAAGGATGTTGCGACGATAGAGATCATTATC
ACCATCATCACCACGAGAAGGAGGGGGAGGAGAAGGAGAAGGAGGAGTAC
GCGCACGGACTCCCGCGCGGAGGGCACCAGCACTCCCACGACGGAGGGGG
GAGTTGTTGTGGTGGTCACCAACATGGCGAGGAGGACGAGAACGACCATA
TAGCCACCCAACAGAGTTTAGCATTGTTGAGTCTAGAAACCAGAATGGTC
GGGGCGGCGCGAGTAGCCAAATCGGCAGCGGACGGTGATGCGGCAAGGGT
TCTCGGAGGGGGAGAGGGGGAGATGACATGA
back to top
Synonyms
Publications