|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:731051..733407 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02450.1 vs.
Match: EWM27539.1 (PolyU-binding-splicing factor PUF60 [Nannochloropsis gaditana]) HSP 1 Score: 141.4 bits (355), Expect = 6.500e-30 Identity = 105/190 (55.26%), Postives = 119/190 (62.63%), Query Frame = 0
Query: 241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWAAAGGGGGGG---------AGMASYTYPPQLG--MVGGGYGGGYGGALVQHGQSMFVQQPAGGALLYQQQPLQMYQQQQPYQQQQQQ-------QQQQQQQQQQQPSAYYAQGGMSYGPG 413
FEV+EEVV+GLFQ+FG+IRSFSLLPDPQ PGRLHRGYGFI+F+S++AAA AIQ M GF+L GR MKVGWAA GG GG AG +Y Q + G YG G A + Q QQ AL+YQQ Q QQ Q QQQQ Q QQQQQQQQQQQ YYAQ +YGPG
Sbjct: 344 FEVSEEVVRGLFQSFGKIRSFSLLPDPQMNPGRLHRGYGFIEFDSEQAAATAIQTMQGFELQGRAMKVGWAAPVGGSGGAPPASGAPSMAGAGTYVQQQQALNLLTGQYYGQGVMPAGMYAPQPQQQQQQQPPALMYQQPQHQYLQQYQQMQQQQPQPQGQPQGQQQQQQQQQQQQQMYYAQSAAAYGPG 533
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02450.1 ID=NO09G02450.1|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC AAGGAGAAGGCGCAGAAGCGCTTGAACGAGCAGGACAACAATGACCAGCC TCACGGCACAACTATATCCACGAACAGCAGTAGTCGCACCGCCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGAGTCAA TTTCCCGCCTCTCGCTCCAGCAAATCGTCCCCTCCGTCCTCCACCACTTC TTCTCCCTCGGCCGCCGCTGCCGCCACTTCCACTGCCTACTACGCCGCGG CCGTTAATGCCGCAACCGCGTTTGAAGTGGCGGAGGAGGTGGTTAAGGGT TTGTTCCAGAATTTTGGCCGGATCCGGTCTTTTTCTCTTCTGCCGGACCC GCAGCATACGCCCGGGAGGTTGCATCGAGGGTATGGTTTTATAGATTTTG AGAGTGACGAGGCGGCAGCGGCGGCAATTCAGGCCATGAATGGGTTTGAC TTGTACGGCAGAAGAATGAAAGTGGGTTGGGCTGCGGCGGGAGGAGGAGG GGGGGGAGGAGCAGGGATGGCGAGCTATACGTACCCACCACAGTTGGGGA TGGTGGGAGGTGGATATGGAGGTGGATATGGAGGCGCGCTCGTGCAGCAC GGGCAGAGTATGTTTGTGCAGCAGCCAGCAGGAGGTGCCTTGCTTTATCA GCAGCAGCCGCTGCAAATGTACCAACAGCAGCAACCGTACCAACAGCAGC AGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCATCGGCG TACTATGCGCAGGGCGGGATGTCGTATGGGCCTGGAGGGGTTTGA back to topprotein sequence of NO09G02450.1 >NO09G02450.1-protein ID=NO09G02450.1-protein|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp MPRAKPTKKAVKAEPPVPPAPVAEEEEEEETKALEGPAPEAPVEEEEGDA TNSGSTVPENHTTSTTTGNNKKKAEVIEGSDVKEEPTNKRQKRQPQDKAG EEAVEAEAAVKAETSTAPPTSAGEKGQEAEEDPEILLKSIIEKQLELQEA KEKAQKRLNEQDNNDQPHGTTISTNSSSRTASSSSSSSSSSSSSSSSQSQ FPASRSSKSSPPSSTTSSPSAAAAATSTAYYAAAVNAATAFEVAEEVVKG LFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFD LYGRRMKVGWAAAGGGGGGGAGMASYTYPPQLGMVGGGYGGGYGGALVQH GQSMFVQQPAGGALLYQQQPLQMYQQQQPYQQQQQQQQQQQQQQQQQPSA YYAQGGMSYGPGGV* back to topmRNA from alignment at chr9:731051..733407- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02450.1 ID=NO09G02450.1|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp|location=Sequence derived from alignment at chr9:731051..733407- (Nannochloropsis oceanica) ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT
GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC
TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG
ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC
TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG
AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA
GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC
GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG
AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC
AAGGAGAAGGCGCAGAAGCGCTTGAACGAGGTATGTGGTAGGGGTGTGTG
TGGAGGGGTTTGAGATTGCACTTGTCTGTCACTACCGGTTCGGGGAGGGG
GGGAGTGTCTATGATGCTTGTCTGGATCGACCTCCCATTGCATTTCTTTC
ATGTTTTTAAGAATGTTTTGGAGTTTTGCTATCCTTTTGCCTTGTTGGGG
GCATGTTTCCTACATTGCCTCTCTCGGTCCGTCTACCTTCTCTCCTCTCT
TCAGTCGAGTCTTGTGCCTCTCCGCTCTGCTGCTGCCGTCTTCATTTCCT
TCTTCTCCCGTCCCCCTTTCCTGCTTTCTGCCTGTCCTTTGGGAGCTTTT
GGGGCATGCGGCTTTCCTCACCATGAAGCCTCGTCGTTGTCGTATCGATG
TTGGCAGGCGATGTTTAATATTATTGGGCTGCTCAGCAGGACAACAATGA
CCAGCCTCACGGCACAACTATATCCACGAACAGCAGTAGTCGCACCGCCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAG
AGTGTGAGGACTTGTTAAGAAAAGCGACGATGGGGAAGACGTCGAGCCCA
TCCAACTTTGCATGGCAGCAGGAGGAGGAAGAGAGGTCCCGTGCACTGCA
GACACTCTAGGAATCAGCACTTCACCCCATTGCGACACTGACTGCTGCGA
ATTAACACGACAACGACGAGAATAGTCAAGGACACGGGCCGTCGTTCGCC
TTAGCTGTCTCTCGTCTCCCTCTCACCCACCCCTATTCTCTCTTCCCCCC
ACCCTTTTTTCCACTTGTCCCAATCCACAGCAATTTCCCGCCTCTCGCTC
CAGCAAATCGTCCCCTCCGTCCTCCACCACTTCTTCTCCCTCGGCCGCCG
CTGCCGCCACTTCCACTGCCTACTACGCCGCGGCCGTTAATGCCGCAACC
GGTACCGCTGGTGACCCCCCCTTCCCTCTCTCCCTCATACCTCCTCGTCG
AAACAACAATCCCCGGTGGACGATGCGTGTCGTGTGTATGTGGGGAGTTT
GCATTATGATTTGAAGGAGGAGGACGTTAGGAAGGTGTTTGCTCCTTTTG
GGGCGATTCGGAACATCAATATGTCGTTCGAGCCAGCGACAGGAAAGAGT
AAGGGCTTTGCATTTGTGGATTTTGAGCAAGGGGAGAGTGCAACCATGGC
ACTGCAGACGATGAACGGTTTTCAGTTGGCGGGCCGGCCGCTGAAGGTCG
GGAGGCCTGCGCCGGGGGGGGCGGGGGGGGGGTAAAGGGAGGCGGAGCGC
GGCAGCAGGTACAGCAGGGTTATACCGGAGGAGGGAGAGGGGGAGGGGGG
GGGGGGCAAGGGTATATGTGGGGTCAATAGCGTTTGAAGTGGCGGAGGAG
GTGGTTAAGGGTTTGTTCCAGAATTTTGGCCGGATCCGGTCTTTTTCTCT
TCTGCCGGACCCGCAGCATACGCCCGGGAGGTTGCATCGAGGGTATGGTT
TTATAGATTTTGAGAGTGACGAGGCGGCAGCGGCGGCAATTCAGGCCATG
AATGGGTTTGACTTGTACGGCAGAAGAATGAAAGTGGGTTGGGCTGCGGC
GGGAGGAGGAGGGGGGGGAGGAGCAGGGATGGCGAGCTATACGTACCCAC
CACAGTTGGGGATGGTGGGAGGTGGATATGGAGGTGGATATGGAGGCGCG
CTCGTGCAGCACGGGCAGAGTATGTTTGTGCAGCAGCCAGCAGGAGGTGC
CTTGCTTTATCAGCAGCAGCCGCTGCAAATGTACCAACAGCAGCAACCGT
ACCAACAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCCATCGGCGTACTATGCGCAGGGCGGGATGTCGTATGGGCCTGGAGG
GGTTTGA back to topCoding sequence (CDS) from alignment at chr9:731051..733407- >NO09G02450.1 ID=NO09G02450.1|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr9:731051..733407- (Nannochloropsis oceanica) ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC AAGGAGAAGGCGCAGAAGCGCTTGAACGAGCAGGACAACAATGACCAGCC TCACGGCACAACTATATCCACGAACAGCAGTAGTCGCACCGCCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGAGTCAA TTTCCCGCCTCTCGCTCCAGCAAATCGTCCCCTCCGTCCTCCACCACTTC TTCTCCCTCGGCCGCCGCTGCCGCCACTTCCACTGCCTACTACGCCGCGG CCGTTAATGCCGCAACCGCGTTTGAAGTGGCGGAGGAGGTGGTTAAGGGT TTGTTCCAGAATTTTGGCCGGATCCGGTCTTTTTCTCTTCTGCCGGACCC GCAGCATACGCCCGGGAGGTTGCATCGAGGGTATGGTTTTATAGATTTTG AGAGTGACGAGGCGGCAGCGGCGGCAATTCAGGCCATGAATGGGTTTGAC TTGTACGGCAGAAGAATGAAAGTGGGTTGGGCTGCGGCGGGAGGAGGAGG GGGGGGAGGAGCAGGGATGGCGAGCTATACGTACCCACCACAGTTGGGGA TGGTGGGAGGTGGATATGGAGGTGGATATGGAGGCGCGCTCGTGCAGCAC GGGCAGAGTATGTTTGTGCAGCAGCCAGCAGGAGGTGCCTTGCTTTATCA GCAGCAGCCGCTGCAAATGTACCAACAGCAGCAACCGTACCAACAGCAGC AGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCATCGGCG TACTATGCGCAGGGCGGGATGTCGTATGGGCCTGGAGGGGTTTGA back to top
|