NO09G01940.1, NO09G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01940.1
Unique NameNO09G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1385
Alignment locationchr9:600129..601713 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:600129..601713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01940.1 vs.
Match: XP_005852726.1 (metallo-beta-lactamase domain-containing protein [Nannochloropsis gaditana CCMP526]; EKU23106.1 metallo-beta-lactamase domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 307.4 bits (786), Expect = 6.500e-80
Identity = 143/177 (80.79%), Postives = 157/177 (88.70%), Query Frame = 0 
Query:  217 MAAVKLRFDYLTNKPVYLNEAMGVLERPVSYLKFNVIETDADIDSGATDGVPVRALPVLHGGDYICLGFGVGRPGEFVYLSDVKNIPEKTMSYLKSLPKIKTLVVDCIKMTTGNFAHAAFEEVRGWVDELKPDKVWLVGMGCGIGEHDDANRRIH-EMGYPMVELAYDGLYVEGFSL 393
            M AV+LRFDYLTN PVYL+EA GVLERP+SYLKFNVIE +A I+S A DGVPVRALPVLHGGDYICLGF VG PGEF+YLSDVK IP +TM YLK LP+IKTLVVDC+KM  GNFAHAAFEEVR W+DELKP+KVWLVGMGCGIG+HD+ANR I  EMGYPMVELAYDGLY+EGF L
Sbjct:    1 MQAVRLRFDYLTNPPVYLDEAKGVLERPISYLKFNVIEPNAVIESSAVDGVPVRALPVLHGGDYICLGFAVGPPGEFIYLSDVKEIPPETMQYLKDLPRIKTLVVDCLKMRAGNFAHAAFEEVREWIDELKPEKVWLVGMGCGIGDHDEANRVIQDEMGYPMVELAYDGLYLEGFRL 177
The following BLAST results are available for this feature:
BLAST of NO09G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852726.16.500e-8080.79metallo-beta-lactamase domain-containing protein [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01940NO09G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01940.1NO09G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01940.1.cds1NO09G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01940.1.cds2NO09G01940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01940.1 ID=NO09G01940.1|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp
ACAGTGCGTTCAGGCCACGCGCACTTTCGCATGCGCCCCGTCCTTCTCTC
GGCGCTGCCAGTGGTCGTGGCGCCCCTGATTTTGGCGCTTTTGGCAGCAA
GACACGTCAGCGGGTTTGGACACCGCGGCCTCGCCATGTCTACCTTCCTC
GGCCCCTCGCGGCGTATTGGTACCAGCCGACGGCAGCCGCAGCGACAGCA
GCACCAGCAGCACTTTCGACGTTGTAGTCCTCGTCTTGCCATGACAGCTA
CGGGGGAAGACGAATGGGTCTTTGATGTGCTCTTTACGGGGACCGGACAA
TCGTCATCCGTGCCATTGCTCAAGCACGCGGTCCGAGGGACGTGCAAGGT
GTGCAACGACGCCTTGATGAGGCCGGGATCGAAAAACAAGCGCAATAATG
TCTCCTGCGCTATTATCAAGCGGAAGAAGTCCACGCCCGTCGGCGAAACA
CCACGGATCGCTGCACTGATCGACTGCGGCAAGACCTTCCGGGAAGTCGT
GTTGAACCTGTTCCCCCGCTATGGACTACAAGAAGTAGGGGCATTGTTGC
TAACGCATGGACATGCGGATGCTATTCTGGGGATGGATGATTTGAGAGAT
TTGCAACTGTATGAACACGTCGACCCGGGGGTGAGGTTTCCCTCGGGGCC
GATCAATGTGTTTTTGCATGAGGCGACCATGGCGGCGGTTAAATTACGGT
TCGATTATTTGACAAATAAACCTGTCTATCTAAACGAGGCGATGGGAGTA
TTGGAGCGACCGGTGTCGTATTTAAAGTTCAATGTAATTGAGACGGACGC
GGACATTGATTCGGGCGCAACGGATGGGGTGCCTGTAAGAGCATTGCCTG
TTTTGCATGGAGGGGACTATATTTGCTTAGGATTCGGGGTGGGAAGGCCG
GGGGAGTTTGTGTATTTGTCGGATGTGAAGAATATCCCTGAAAAGACTAT
GAGCTATTTGAAGTCTTTGCCGAAAATAAAGACGTTGGTGGTTGATTGCA
TTAAAATGACCACAGGGAATTTTGCGCACGCGGCGTTCGAGGAAGTGAGG
GGGTGGGTGGATGAATTGAAGCCGGACAAGGTGTGGTTGGTGGGGATGGG
GTGTGGGATCGGGGAGCACGATGATGCAAATCGGAGGATACATGAGATGG
GGTATCCGATGGTAGAGTTGGCGTATGACGGTCTTTACGTGGAGGGCTTT
TCGCTGTAAAGTAGAAAGAAAAGGAAGGAGGGAGATAGGTAGAGTGCGAG
GGGAGGGGACGCAGTATTAATAGATAAGTCGATGGTTTGCTACAGGATAA
ATCTAGAAATGACATTTCGGTTTGATTGTGTTGAGATGAAAATGAAAATA
AGAGCGTGGATCAAGAATGACCAATCACAGAGAAA
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protein sequence of NO09G01940.1

>NO09G01940.1-protein ID=NO09G01940.1-protein|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MRPVLLSALPVVVAPLILALLAARHVSGFGHRGLAMSTFLGPSRRIGTSR
RQPQRQQHQQHFRRCSPRLAMTATGEDEWVFDVLFTGTGQSSSVPLLKHA
VRGTCKVCNDALMRPGSKNKRNNVSCAIIKRKKSTPVGETPRIAALIDCG
KTFREVVLNLFPRYGLQEVGALLLTHGHADAILGMDDLRDLQLYEHVDPG
VRFPSGPINVFLHEATMAAVKLRFDYLTNKPVYLNEAMGVLERPVSYLKF
NVIETDADIDSGATDGVPVRALPVLHGGDYICLGFGVGRPGEFVYLSDVK
NIPEKTMSYLKSLPKIKTLVVDCIKMTTGNFAHAAFEEVRGWVDELKPDK
VWLVGMGCGIGEHDDANRRIHEMGYPMVELAYDGLYVEGFSL*
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mRNA from alignment at chr9:600129..601713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01940.1 ID=NO09G01940.1|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at chr9:600129..601713- (Nannochloropsis oceanica)
ACAGTGCGTTCAGGCCACGCGCACTTTCGCATGCGCCCCGTCCTTCTCTC
GGCGCTGCCAGTGGTCGTGGCGCCCCTGATTTTGGCGCTTTTGGCAGCAA
GACACGTCAGCGGGTTTGGACACCGCGGCCTCGCCATGTCTACCTTCCTC
GGCCCCTCGCGGCGTATTGGTACCAGCCGACGGCAGCCGCAGCGACAGCA
GCACCAGCAGCACTTTCGACGTTGTAGTCCTCGTCTTGCCATGACAGCTA
CGGGGGAAGACGAATGGGTCTTTGATGTGCTCTTTACGGGGACCGGACAA
TCGTCATCCGTGCCATTGCTCAAGCACGCGGTCCGAGGGACGTGCAAGGT
GTGCAACGACGCCTTGATGAGGCCGGGATCGAAAAACAAGTACGACGGGC
AGTGAATGGGATATTGGCGGGGCGACAGAAGGGAAAGACGAGAGTGAACT
ATGATAATGAATTATTCAATTTTGGGCCCCCTCCCTCCTCGCTTCCTCCC
TTGTGTCCTTTCTCCGCTGTATGTCAAATTTTACTTGCGTCTTATCTAAC
CCGTCCCCAAACCGAACTTCTTCCCACTTAAAAATGCAGGCGCAATAATG
TCTCCTGCGCTATTATCAAGCGGAAGAAGTCCACGCCCGTCGGCGAAACA
CCACGGATCGCTGCACTGATCGACTGCGGCAAGACCTTCCGGGAAGTCGT
GTTGAACCTGTTCCCCCGCTATGGACTACAAGAAGTAGGGGCATTGTTGC
TAACGCATGGACATGCGGATGCTATTCTGGGGATGGATGATTTGAGAGAT
TTGCAACTGTATGAACACGTCGACCCGGGGGTGAGGTTTCCCTCGGGGCC
GATCAATGTGTTTTTGCATGAGGCGACCATGGCGGCGGTTAAATTACGGT
TCGATTATTTGACAAATAAACCTGTCTATCTAAACGAGGCGATGGGAGTA
TTGGAGCGACCGGTGTCGTATTTAAAGTTCAATGTAATTGAGACGGACGC
GGACATTGATTCGGGCGCAACGGATGGGGTGCCTGTAAGAGCATTGCCTG
TTTTGCATGGAGGGGACTATATTTGCTTAGGATTCGGGGTGGGAAGGCCG
GGGGAGTTTGTGTATTTGTCGGATGTGAAGAATATCCCTGAAAAGACTAT
GAGCTATTTGAAGTCTTTGCCGAAAATAAAGACGTTGGTGGTTGATTGCA
TTAAAATGACCACAGGGAATTTTGCGCACGCGGCGTTCGAGGAAGTGAGG
GGGTGGGTGGATGAATTGAAGCCGGACAAGGTGTGGTTGGTGGGGATGGG
GTGTGGGATCGGGGAGCACGATGATGCAAATCGGAGGATACATGAGATGG
GGTATCCGATGGTAGAGTTGGCGTATGACGGTCTTTACGTGGAGGGCTTT
TCGCTGTAAAGTAGAAAGAAAAGGAAGGAGGGAGATAGGTAGAGTGCGAG
GGGAGGGGACGCAGTATTAATAGATAAGTCGATGGTTTGCTACAGGATAA
ATCTAGAAATGACATTTCGGTTTGATTGTGTTGAGATGAAAATGAAAATA
AGAGCGTGGATCAAGAATGACCAATCACAGAGAAA
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Coding sequence (CDS) from alignment at chr9:600129..601713-

>NO09G01940.1 ID=NO09G01940.1|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr9:600129..601713- (Nannochloropsis oceanica)
ATGCGCCCCGTCCTTCTCTCGGCGCTGCCAGTGGTCGTGGCGCCCCTGAT
TTTGGCGCTTTTGGCAGCAAGACACGTCAGCGGGTTTGGACACCGCGGCC
TCGCCATGTCTACCTTCCTCGGCCCCTCGCGGCGTATTGGTACCAGCCGA
CGGCAGCCGCAGCGACAGCAGCACCAGCAGCACTTTCGACGTTGTAGTCC
TCGTCTTGCCATGACAGCTACGGGGGAAGACGAATGGGTCTTTGATGTGC
TCTTTACGGGGACCGGACAATCGTCATCCGTGCCATTGCTCAAGCACGCG
GTCCGAGGGACGTGCAAGGTGTGCAACGACGCCTTGATGAGGCCGGGATC
GAAAAACAAGCGCAATAATGTCTCCTGCGCTATTATCAAGCGGAAGAAGT
CCACGCCCGTCGGCGAAACACCACGGATCGCTGCACTGATCGACTGCGGC
AAGACCTTCCGGGAAGTCGTGTTGAACCTGTTCCCCCGCTATGGACTACA
AGAAGTAGGGGCATTGTTGCTAACGCATGGACATGCGGATGCTATTCTGG
GGATGGATGATTTGAGAGATTTGCAACTGTATGAACACGTCGACCCGGGG
GTGAGGTTTCCCTCGGGGCCGATCAATGTGTTTTTGCATGAGGCGACCAT
GGCGGCGGTTAAATTACGGTTCGATTATTTGACAAATAAACCTGTCTATC
TAAACGAGGCGATGGGAGTATTGGAGCGACCGGTGTCGTATTTAAAGTTC
AATGTAATTGAGACGGACGCGGACATTGATTCGGGCGCAACGGATGGGGT
GCCTGTAAGAGCATTGCCTGTTTTGCATGGAGGGGACTATATTTGCTTAG
GATTCGGGGTGGGAAGGCCGGGGGAGTTTGTGTATTTGTCGGATGTGAAG
AATATCCCTGAAAAGACTATGAGCTATTTGAAGTCTTTGCCGAAAATAAA
GACGTTGGTGGTTGATTGCATTAAAATGACCACAGGGAATTTTGCGCACG
CGGCGTTCGAGGAAGTGAGGGGGTGGGTGGATGAATTGAAGCCGGACAAG
GTGTGGTTGGTGGGGATGGGGTGTGGGATCGGGGAGCACGATGATGCAAA
TCGGAGGATACATGAGATGGGGTATCCGATGGTAGAGTTGGCGTATGACG
GTCTTTACGTGGAGGGCTTTTCGCTGTAA
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Synonyms
Publications