NO09G00710.1, NO09G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00710.1
Unique NameNO09G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3390
Alignment locationchr9:256117..260069 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:256117..260069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00710.1 vs.
Match: EWM27710.1 (60s ribosomal protein l18a [Nannochloropsis gaditana])

HSP 1 Score: 285.4 bits (729), Expect = 1.200e-73
Identity = 136/145 (93.79%), Postives = 141/145 (97.24%), Query Frame = 0 
Query:    1 MVQSRLRQYQVVGRHVPTEAHPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDVNELVERNARIVKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYSEMAGRHRARFRSIQIIRTGVVTAKDAKRTHTMQYH 146
            MVQ+RLRQYQVVGRHVPTEA PNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILD+NELVERN+RI+KNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLY+EMAGRHRARFRSIQIIRTGVV AKD KR HTMQYH
Sbjct:   16 MVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
The following BLAST results are available for this feature:
BLAST of NO09G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27710.11.200e-7393.7960s ribosomal protein l18a [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00710NO09G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00710.1NO09G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00710.1.cds1NO09G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00710.1.cds2NO09G00710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00710.1.cds3NO09G00710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00710.1 ID=NO09G00710.1|Name=NO09G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3390bp
TCTGCCGCGTCCATGTTTGCCTGTGCGGGTAAAAAAAACGAAAGAATTTG
TAATCCAACTTGGACATGGCATATGTGGGGCATGTAATGTGCAACTTCTC
GTTGTAGACATTGCTGTCTTGTAAACTGCTGGCTGGCATATTTGAAATTA
GAATATATGGCATAGAGGGAGACTAAGTAAGGCACCTAAGGACAAATGGA
CAAAGGACAAATCAATGTCGGCGACACAGGCCAAAAACTTTCGTCAAAAT
GAAGATTGGAGGGTGTATGCCTCTGGGAACACGTCACAAGTCTAAGGGAA
GGTAGGTGCTTGGAAGGACTCCTTAGGACAACCGAGGGGGGGAGGTTCCT
TCGGCGATGATGTGTGAAGACGAGATTGACGAAAATGGGCATACATGTGT
GTCAGAGCCGCACAGCACAGGCTCCAAGTTTGTTCCAGTGCAGAGGATTT
GAGCTCTTCTCCCCTTGGAGTAGATCCTGCAAGGTCTAGAGTTGGCCTGT
TTCGGCACGTGTCAAAAAATCCTTAAATGAAACACGGTGCTTTGCCTTGA
CCAAGTCAATGTTATATTTCATCAATATATTATTATGTGTGGAAAACCCA
AGGCCTGCAAACCACTCACGGCTTCCTCACTGTGCCGTTTGCCCCCCCCC
ACCCCACGACTCACTGCGTTTGATCAATCTTGTTACGTAGAAAAGAGATT
AAACGTGCCTCATTTTGGCACAGTGTGTAACTGTGGTCAAGGATGGGAGG
AGGCGGTCATCAGAAGCGTTGGTTGTGGGCTTTTCCACCATCCGCCTCCT
GACTTGCCTTCTTTCGTCTCTCCGTTGCCTCACGCTAGTTTTTTGTCGTA
TGTCTTTGACATTTACTCACTCTTATCTATCCATATACATCCGCACATGA
CCGCAGGGTTTCTTGCTTCCTGAGGAGAGCGTCAATTGTTGTTCGAGTCA
GTCATGGTGCAATCGCGGCTCCGTCAGTACCAGGTAGTGGGACGGCACGT
GCCCACTGAGGCTCACCCCAACCCCACGGTGTTTCGGATGAAGATCTTTG
CGCCAAACGAAGTAGTGGCCAAGTCCCGCTTCTGGTACTTTCTGCACCAG
ATGCACAAAATGAAGAAGACCACGGGCGAGATTCTGGACGTCAACGAGCT
TGTTGAACGCAACGCCCGCATCGTCAAGAATTACGCCATCTGGCTCAAAT
ATGACTCCCGCTCCGGCACCCACAACATGTACCGCGAGTATCGTGACTTG
ACTCTCACTGGCGCCGTTGACCAGCTCTACTCGGAGATGGCGGGTCGCCA
CCGTGCTCGGTTCCGCTCTATCCAGATCATTCGCACGGGGGTCGTGACCG
CCAAAGACGCCAAGCGCACACACACTATGCAGTACCATAATTCAAAGATT
AAGTTTCCGTTGCCCCACCGCATCCAGCGACCGCCCACCAAGAGCCTGCG
TGGCGTCTACAAGGCCGTTCGACCCAACACCTACTTCCACTAGATCTCCA
CGTCTCCCTCTCCCTCTTTCCGCCTTTCCGGTCGGGAGCATATAATAGGA
TGGAATGGATGCGGCAGCAGCAATGCGAGGTAATGGACGGGTTACAGGGT
GTGAGCGATGCGGGGGCCTGGCATGGCATGGGAGGGAGGGAGGGAATGGT
GCCGTTTAGACGGGCACTTTAACGGTAGTAACAAAGAAAAAACCAAAACC
GAGTCTTTTCGTGATGCACACACGAATTTTATTGAAAATTTGTCTGTCTG
TGTGTATCATTGGGTTTGTCACTCTCCGGAGTCTTGCCCACTGACCATTT
CTTTTGACTCTCAGGCATCCAACAACCCCAAGAAAACTGCCAAAGCCTTT
CCATCGCTTTGTTGTTTCGGACGCATCGTGACCATTGGAAATAGTTTTTG
GTATCTATCTCTTTATTTAGTTCGTCTCGCGTACTCTTCCTTGTTCCTTG
CCTTGCTTCTCCAGGCTTGTGGTGCGAAGCACTTCGATCCTTCCCTCTTG
TACCCAATTTCCTTACTTTCTCTCTTTCCTATTCTCTCCCTGTGATGCAT
GTCAGTCACACCAGCACTCTTAATGAGACCGCCAAGGCAATACCAACCGC
ACTACCGATCAAGGTGTTCAAAAAGTTGATGAACTCGTTCGTCGCCCACG
GGTGCCGTTCATTCTGCAGACTCGCCCCCAGGAGGCTCTCGACATTCGTA
GCCACGAAGGCGGCCACCAACACGAGCGGGACAGCATTCAAGCTCATCAA
CTTCAACCCTACCCCCGCCCCAGCCATGAGAATAGAACCCATCACGCCCG
CCACGGTGCCTTCTAGACTGACGGCGCCCTCCGTGCCAGGAGGAACGGGC
TTGAGCGTCGTGATAAGGAAAGTTCGTTTCCCGTAGGCCTTGCCAATCTC
ACTTGCGAAAGTGTCGGACAGCTTGGTGGCGAGCGAAGCAACATACCCGA
TGAGAAGGATGGGGATCCAGGTGGGAAGAAAGAGGGTGGCGATAGCGCAC
AGCGTGCCCTGTATATAAATACATACACACACATGTATGTTTCACAGGGT
GACTGGGTGAATGGGTTGCAAAATATGACTCGAGGTCCTCCTTGATCTTC
CCGCCAGACACAAAACAAAACCTACCGCTGCCGCTGATCCCCAAACATTC
TCTGGTCCTCTTGCTCCGCCCCGTTTCTCCGCGATGCCCAACGCCTCCTT
CTCCGCCTGCTTCACCTTGGTGACAAGCGACCCAAACACCAAATAGAACA
CACACAAGGCCCAGCCCCGCCAGCCCAGCGTCGTCCATAGTGACACCCCA
AGCACCCAGGCATGCAACAATCCCCACGAGGTCAACCATCGTTGTTTCAA
TGCCATTCCTAGGATGGCCAGTGCTGAGTTAGTCCACAACCCTCTCCCCG
CGTTGGCCGAATACGCCGCAAACTCCGGCAAGCTGGTTAGGGCCAGATGA
GAGAGCGCACCGCGTGGCCCCTGTAGCTGACCTTTTGATATCCTTGATGT
CTCGGCACATACGTTGGTAATCGTCACAGGTGTTTTAGTGAAGGACAGCG
CGGTGGAGGGGAAGGTACCAGCAGGTCGAACAGAGGAGAGGAGGCTCGAG
ACCTTTTTACCTAGACAACCCCGTGGTCCGCTTAGAAATGCTCCCGTCAA
GAAAGAGGCCGTGGCCAGCTGTACAGGAAGAAGAATAAGAGCGGCGAAAG
GGAGCAGCGCAAGGAGCAGCAGTGGACGCATGTACAGGAATTTTCTCCTC
CGTGGAAGCAGCAGCGTCGAGTTGCAGTTCACTGTAGGCATCTTGACGCC
GGTGCGGGCAGGAACGAAGATGAATGCGTAGTCGAGGAATAAAGGTCGGG
GCTTGGTCCCCGCTGCCCTAGACGGTACGTGTGGAGCTCT
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protein sequence of NO09G00710.1

>NO09G00710.1-protein ID=NO09G00710.1-protein|Name=NO09G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MVQSRLRQYQVVGRHVPTEAHPNPTVFRMKIFAPNEVVAKSRFWYFLHQM
HKMKKTTGEILDVNELVERNARIVKNYAIWLKYDSRSGTHNMYREYRDLT
LTGAVDQLYSEMAGRHRARFRSIQIIRTGVVTAKDAKRTHTMQYHNSKIK
FPLPHRIQRPPTKSLRGVYKAVRPNTYFH*
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mRNA from alignment at chr9:256117..260069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00710.1 ID=NO09G00710.1|Name=NO09G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3953bp|location=Sequence derived from alignment at chr9:256117..260069- (Nannochloropsis oceanica)
TCTGCCGCGTCCATGTTTGCCTGTGCGGGTAAAAAAAACGAAAGAATTTG
TAATCCAACTTGGACATGGCATATGTGGGGCATGTAATGTGCAACTTCTC
GTTGTAGACATTGCTGTCTTGTAAACTGCTGGCTGGCATATTTGAAATTA
GAATATATGGCATAGAGGGAGACTAAGTAAGGCACCTAAGGACAAATGGA
CAAAGGACAAATCAATGTCGGCGACACAGGCCAAAAACTTTCGTCAAAAT
GAAGATTGGAGGGTGTATGCCTCTGGGAACACGTCACAAGTCTAAGGGAA
GGTAGGTGCTTGGAAGGACTCCTTAGGACAACCGAGGGGGGGAGGTTCCT
TCGGCGATGATGTGTGAAGACGAGATTGACGAAAATGGGCATACATGTGT
GTCAGAGCCGCACAGCACAGGCTCCAAGTTTGTTCCAGTGCAGAGGATTT
GAGCTCTTCTCCCCTTGGAGTAGATCCTGCAAGGTCTAGAGTTGGCCTGT
TTCGGCACGTGTCAAAAAATCCTTAAATGAAACACGGTGCTTTGCCTTGA
CCAAGTCAATGTTATATTTCATCAATATATTATTATGTGTGGAAAACCCA
AGGCCTGCAAACCACTCACGGCTTCCTCACTGTGCCGTTTGCCCCCCCCC
ACCCCACGACTCACTGCGTTTGATCAATCTTGTTACGTAGAAAAGAGATT
AAACGTGCCTCATTTTGGCACAGTGTGTAACTGTGGTCAAGGATGGGAGG
AGGCGGTCATCAGAAGCGTTGGTTGTGGGCTTTTCCACCATCCGCCTCCT
GACTTGCCTTCTTTCGTCTCTCCGTTGCCTCACGCTAGTTTTTTGTCGTA
TGTCTTTGACATTTACTCACTCTTATCTATCCATATACATCCGCACATGA
CCGCAGGGTTTCTTGCTTCCTGAGGAGAGCGTCAATTGTTGTTCGAGTCA
GTCATGGTGGTAAGTCGCGGGGGTCTACTCGATGGAGGGAGGAGAAGAGA
ATGAGGGGTGGATTGGGATGATCATGGTTTGCTTTGTGGGGGCAACGATG
CCTCTTACGGTCTTGCAGCCCTGCTTCTTGTTGTTTAGGGTTATTGATAA
TGGTATGCTGTTGCTATGGTGAGGTATGGGTGTTGCGGATTGACCTACCA
AGCCTGGCCCCCTCGCTTCGTCCATCCACTGCATCATCTGCCCTTCGAAA
AGTCATTTCATGTCCCTGTGCATGTCCGCACCCTCTGTTTCCATGTTCTG
AGCACCTTTCCCCCTTAATGTTGCGCTGCATGCCCACACGTGCACGGTTT
CCCCCGAACTTAAGTCTCTCTCTCCCCCTCCCAAGCAATCGCGGCTCCGT
CAGTACCAGGTAGTGGGACGGCACGTGCCCACTGAGGCTCACCCCAACCC
CACGGTGTTTCGGATGAAGATCTTTGCGCCAAACGAAGTAGTGGCCAAGT
CCCGCTTCTGGTACTTTCTGCACCAGATGCACAAAATGAAGAAGACCACG
GGCGAGATTCTGGACGTCAACGAGCTTGTTGAACGCAACGCCCGCATCGT
CAAGAATTACGCCATCTGGCTCAAATATGACTCCCGCTCCGGCACCCACA
ACATGTACCGCGAGTATCGTGACTTGACTCTCACTGGCGCCGTTGACCAG
CTCTACTCGGAGATGGCGGGTCGCCACCGTGCTCGGTTCCGCTCTATCCA
GATCATTCGCACGGGGGTCGTGACCGCCAAAGACGCCAAGCGCACACACA
CTATGCAGTACCATGTACGTATCTAGCACAGTCGGCCGCTTTTGAATGAG
AGGAGGGGGCAGGAAGGGTGCCATGGTGTGTGTTGATATTGACAGCATCA
TACATAGTGTAGTGTCTGCATTTTTTCCCTTTAAGCTGCCTCTGCGCCCA
ATCACCCACGCATCACACTTCTCTCTTTCCTTTCCTCTTCCATTTTCACA
GAATTCAAAGATTAAGTTTCCGTTGCCCCACCGCATCCAGCGACCGCCCA
CCAAGAGCCTGCGTGGCGTCTACAAGGCCGTTCGACCCAACACCTACTTC
CACTAGATCTCCACGTCTCCCTCTCCCTCTTTCCGCCTTTCCGGTCGGGA
GCATATAATAGGATGGAATGGATGCGGCAGCAGCAATGCGAGGTAATGGA
CGGGTTACAGGGTGTGAGCGATGCGGGGGCCTGGCATGGCATGGGAGGGA
GGGAGGGAATGGTGCCGTTTAGACGGGCACTTTAACGGTAGTAACAAAGA
AAAAACCAAAACCGAGTCTTTTCGTGATGCACACACGAATTTTATTGAAA
ATTTGTCTGTCTGTGTGTATCATTGGGTTTGTCACTCTCCGGAGTCTTGC
CCACTGACCATTTCTTTTGACTCTCAGGCATCCAACAACCCCAAGAAAAC
TGCCAAAGCCTTTCCATCGCTTTGTTGTTTCGGACGCATCGTGACCATTG
GAAATAGTTTTTGGTATCTATCTCTTTATTTAGTTCGTCTCGCGTACTCT
TCCTTGTTCCTTGCCTTGCTTCTCCAGGCTTGTGGTGCGAAGCACTTCGA
TCCTTCCCTCTTGTACCCAATTTCCTTACTTTCTCTCTTTCCTATTCTCT
CCCTGTGATGCATGTCAGTCACACCAGCACTCTTAATGAGACCGCCAAGG
CAATACCAACCGCACTACCGATCAAGGTGTTCAAAAAGTTGATGAACTCG
TTCGTCGCCCACGGGTGCCGTTCATTCTGCAGACTCGCCCCCAGGAGGCT
CTCGACATTCGTAGCCACGAAGGCGGCCACCAACACGAGCGGGACAGCAT
TCAAGCTCATCAACTTCAACCCTACCCCCGCCCCAGCCATGAGAATAGAA
CCCATCACGCCCGCCACGGTGCCTTCTAGACTGACGGCGCCCTCCGTGCC
AGGAGGAACGGGCTTGAGCGTCGTGATAAGGAAAGTTCGTTTCCCGTAGG
CCTTGCCAATCTCACTTGCGAAAGTGTCGGACAGCTTGGTGGCGAGCGAA
GCAACATACCCGATGAGAAGGATGGGGATCCAGGTGGGAAGAAAGAGGGT
GGCGATAGCGCACAGCGTGCCCTGTATATAAATACATACACACACATGTA
TGTTTCACAGGGTGACTGGGTGAATGGGTTGCAAAATATGACTCGAGGTC
CTCCTTGATCTTCCCGCCAGACACAAAACAAAACCTACCGCTGCCGCTGA
TCCCCAAACATTCTCTGGTCCTCTTGCTCCGCCCCGTTTCTCCGCGATGC
CCAACGCCTCCTTCTCCGCCTGCTTCACCTTGGTGACAAGCGACCCAAAC
ACCAAATAGAACACACACAAGGCCCAGCCCCGCCAGCCCAGCGTCGTCCA
TAGTGACACCCCAAGCACCCAGGCATGCAACAATCCCCACGAGGTCAACC
ATCGTTGTTTCAATGCCATTCCTAGGATGGCCAGTGCTGAGTTAGTCCAC
AACCCTCTCCCCGCGTTGGCCGAATACGCCGCAAACTCCGGCAAGCTGGT
TAGGGCCAGATGAGAGAGCGCACCGCGTGGCCCCTGTAGCTGACCTTTTG
ATATCCTTGATGTCTCGGCACATACGTTGGTAATCGTCACAGGTGTTTTA
GTGAAGGACAGCGCGGTGGAGGGGAAGGTACCAGCAGGTCGAACAGAGGA
GAGGAGGCTCGAGACCTTTTTACCTAGACAACCCCGTGGTCCGCTTAGAA
ATGCTCCCGTCAAGAAAGAGGCCGTGGCCAGCTGTACAGGAAGAAGAATA
AGAGCGGCGAAAGGGAGCAGCGCAAGGAGCAGCAGTGGACGCATGTACAG
GAATTTTCTCCTCCGTGGAAGCAGCAGCGTCGAGTTGCAGTTCACTGTAG
GCATCTTGACGCCGGTGCGGGCAGGAACGAAGATGAATGCGTAGTCGAGG
AATAAAGGTCGGGGCTTGGTCCCCGCTGCCCTAGACGGTACGTGTGGAGC
TCT
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Coding sequence (CDS) from alignment at chr9:256117..260069-

>NO09G00710.1 ID=NO09G00710.1|Name=NO09G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr9:256117..260069- (Nannochloropsis oceanica)
ATGGTGCAATCGCGGCTCCGTCAGTACCAGGTAGTGGGACGGCACGTGCC
CACTGAGGCTCACCCCAACCCCACGGTGTTTCGGATGAAGATCTTTGCGC
CAAACGAAGTAGTGGCCAAGTCCCGCTTCTGGTACTTTCTGCACCAGATG
CACAAAATGAAGAAGACCACGGGCGAGATTCTGGACGTCAACGAGCTTGT
TGAACGCAACGCCCGCATCGTCAAGAATTACGCCATCTGGCTCAAATATG
ACTCCCGCTCCGGCACCCACAACATGTACCGCGAGTATCGTGACTTGACT
CTCACTGGCGCCGTTGACCAGCTCTACTCGGAGATGGCGGGTCGCCACCG
TGCTCGGTTCCGCTCTATCCAGATCATTCGCACGGGGGTCGTGACCGCCA
AAGACGCCAAGCGCACACACACTATGCAGTACCATAATTCAAAGATTAAG
TTTCCGTTGCCCCACCGCATCCAGCGACCGCCCACCAAGAGCCTGCGTGG
CGTCTACAAGGCCGTTCGACCCAACACCTACTTCCACTAG
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Synonyms
Publications