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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:176738..178824 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00390.1 vs.
Match: XP_005852443.1 (sorting nexin 1, partial [Nannochloropsis gaditana CCMP526]; EKU23388.1 sorting nexin 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 518.1 bits (1333), Expect = 2.800e-143 Identity = 269/406 (66.26%), Postives = 312/406 (76.85%), Query Frame = 0
Query: 1 MTTSMSEPSHATNGLAIAVTDPTKHNEGVNAYIGYSITTNADDTREEFQAPRTTVLRRYSDFHFLHAKLGHAFPGTILPPLPDKALVGRFGASFVEGRRRALERYLLRVAKHPELGASRELVLFLQADEATLQHAKEEWKRSQRNQPQKVLKLFKQAFTQMEQSLSHAPTGHVTVPPSELDGRVDGIAARVHLLEVHYHSVAREASGWIRGEKEAGDGCFQLGLALTLLGQNEAGGLGEAIRSAGHAIDGVSAVALAAVEDGGVLLEEPLVEWSRAVGAAKVALLRRAEARKVYLESLVEVATRLHVKGKWVGMIGKEEKLNAAELAWSKAVEVAEKKKGEYEEVSERLVRDWGTFREEKAREVHRVLVAFAEAQVTRHEKMRKAWEEAMPKIRDVDVMHALDEKA 407
M S P+ A NGL ++V DP KHNEGV A+IGY++ T ADD+R EFQAPRT+VLRRYSDF++LH KL H+FPG ILPPLP+KA+VGRF A FVE RRRALERYLLRV KHPELG S +LVLFLQ +EA L+HAK EW+R Q QP KVL+L KQAF ME SLS A TG V VP S+ D +D IA VH+LEVH+HS AREAS W+R EKEA DGCFQLGLALTLLGQNEAGGLGE IR GHA+D S +A AVE G+LLE PLVEWSR +G+AK+ALLRR EAR+ Y E+LVEVA R K KWVGMIGKE+KL AAE AW KAV AE K E+E VS R+VRDWG FREEKA E+ + VAF EAQV RHEKMR AW A+ K+++VD L+++A
Sbjct: 1 MANSSPNPTAALNGLLVSVADPLKHNEGVQAWIGYTVVTQADDSRSEFQAPRTSVLRRYSDFNWLHMKLSHSFPGRILPPLPEKAMVGRFEAPFVEARRRALERYLLRVVKHPELGKSSDLVLFLQENEAKLEHAKAEWRREQMRQP-KVLRLVKQAFAHMEHSLSSASTGKVEVPRSDSDAVLDDIATCVHVLEVHFHSAAREASTWVRREKEAADGCFQLGLALTLLGQNEAGGLGEVIRGTGHALDAASVLATGAVESSGLLLEGPLVEWSRGLGSAKLALLRRMEARRAYHEALVEVAVRAQGKEKWVGMIGKEDKLQAAEGAWGKAVAAAEAKNKEFETVSGRIVRDWGAFREEKAEELRKAAVAFLEAQVGRHEKMRTAWAGALSKVKEVDPKQGLNQEA 405
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00390.1 ID=NO09G00390.1|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1429bp CAGGTCCTGGACACCAGAGCTTCTTCCCACTGCCACAACACACCACAGCG GCCGACAGCACCCCCACTTTCACCAGCATGACGACCAGTATGAGTGAGCC AAGTCATGCCACGAACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGC ACAACGAAGGCGTGAACGCTTACATCGGGTACAGCATCACCACCAACGCG GACGACACCCGCGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCG TTACTCCGACTTTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCG GCACCATCCTGCCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGC GCGAGTTTTGTGGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCG AGTGGCGAAACACCCTGAATTAGGCGCATCGCGGGAGCTGGTCCTGTTCC TTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGGAAGCGC AGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACAAGCCTT CACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACGTCACAG TGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCCCGTGTC CACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTCGGGCTG GATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCGGACTGG CATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAGGCGATC CGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCTGGCGGC CGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGTGGAGCC GGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAAGCGAGG AAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCACGTTAA AGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATGCGGCGG AGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAGGGGGAG TACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATTTAGGGA AGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAGAGGCGC AGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCAATGCCG AAGATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAGGCGGTCAA ACCTGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCGGGTGGTG TCAGTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAGGGGAACGA GAGGAGGCAGCAGCGCCAAGAGTGTAGAT back to topprotein sequence of NO09G00390.1 >NO09G00390.1-protein ID=NO09G00390.1-protein|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp MTTSMSEPSHATNGLAIAVTDPTKHNEGVNAYIGYSITTNADDTREEFQA PRTTVLRRYSDFHFLHAKLGHAFPGTILPPLPDKALVGRFGASFVEGRRR ALERYLLRVAKHPELGASRELVLFLQADEATLQHAKEEWKRSQRNQPQKV LKLFKQAFTQMEQSLSHAPTGHVTVPPSELDGRVDGIAARVHLLEVHYHS VAREASGWIRGEKEAGDGCFQLGLALTLLGQNEAGGLGEAIRSAGHAIDG VSAVALAAVEDGGVLLEEPLVEWSRAVGAAKVALLRRAEARKVYLESLVE VATRLHVKGKWVGMIGKEEKLNAAELAWSKAVEVAEKKKGEYEEVSERLV RDWGTFREEKAREVHRVLVAFAEAQVTRHEKMRKAWEEAMPKIRDVDVMH ALDEKAVKPVTTASAAAAAAAAGGVSGEGGKEVGEKKEGEREEAAAPRV* back to topmRNA from alignment at chr9:176738..178824+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00390.1 ID=NO09G00390.1|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2087bp|location=Sequence derived from alignment at chr9:176738..178824+ (Nannochloropsis oceanica) CAGGTCCTGGACACCAGAGCTTCTTCCCACTGCCACAACACACCACAGCG
GCCGACAGCACCCCCACTTTCACCAGCATGACGACCAGTATGAGTGAGCC
AAGTCATGCCACGAGTAAGTGTTCCTGAGGTGAAGGAGTGGAGGGTGGAA
GGATGAACACCAGAGCCACACTGGCTGGCCCATTCTCGCTGATTTATACC
CTTCCTTTGTGTACATGCACGCGCGCGCTGTTCTAGAAACACCCGCACGC
ATGTGATTCAAAGTGTTCCTCTAGTACACATAGCTTCCTGCAACTGACGC
CTTGTCCTCAACCATCCAACCTATTTCCCACGTCCTACCCTCCGAAACAC
TAGACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGCACAACGAAGGC
GTGAACGCTTACATCGGGTACAGCATCACCACCAACGCGGACGACACCCG
CGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCGTTACTCCGACT
TTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCGGCACCATCCTG
CCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTGT
GGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCGAGTGGCGAAAC
ACCCTGAATTAGGTCAGTGGGCTTCTTTGGGCTTGTCAGTCGGTTTGTTT
GGTTTATCCCTCCCTCCCTCCCTCCCTCCCTCGCCTCCTTACCCTCCCCT
ATTCACTGACGAGGAACATGTTGTGGGCCGTTACAGAGGGCAAGCTTTTG
CGGCGTCAACATTATTCTCATTTGCCATCCTTGTTTTGTTCCTGTCCAAC
CCCTTTTCTCCCTCCCTTCTTCGCACCAGGCGCATCGCGGGAGCTGGTCC
TGTTCCTTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGG
AAGCGCAGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACA
AGCCTTCACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACG
TCACAGTGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCC
CGTGTCCACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTC
GGGCTGGATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCG
GACTGGCATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAG
GCGATCCGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCT
GGCGGCCGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGT
GGAGCCGGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAA
GCGAGGAAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCA
CGTTAAAGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATG
CGGCGGAGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAG
GGGGAGTACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATT
TAGGGAAGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAG
AGGCGCAGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCA
ATGCCGAAGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGAA
TGGAGCGGGGGAGGCCCCCCTATGGATATTTTCTTGGCTCATTTTGGATG
ACTCAACTCTATGTCTTTACACACTTTGTACCTTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTTCTTCCTCCCTCCTTTATACCCTCCTTCTCAT
TCTTCGTATAGATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAG
GCGGTCAAACCTGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGC
GGGTGGTGTCAGTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAG
GGGAACGAGAGGAGGCAGCAGCGCCAAGAGTGTAGAT back to topCoding sequence (CDS) from alignment at chr9:176738..178824+ >NO09G00390.1 ID=NO09G00390.1|Name=NO09G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr9:176738..178824+ (Nannochloropsis oceanica) ATGACGACCAGTATGAGTGAGCCAAGTCATGCCACGAACGGCCTAGCCAT CGCCGTCACCGACCCCACTAAGCACAACGAAGGCGTGAACGCTTACATCG GGTACAGCATCACCACCAACGCGGACGACACCCGCGAAGAGTTCCAAGCT CCCCGCACGACCGTCCTGCGTCGTTACTCCGACTTTCATTTCCTCCACGC CAAGCTGGGCCATGCATTCCCCGGCACCATCCTGCCCCCCCTGCCTGACA AAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTGTGGAAGGTCGTCGGCGG GCCTTGGAACGATATTTACTGCGAGTGGCGAAACACCCTGAATTAGGCGC ATCGCGGGAGCTGGTCCTGTTCCTTCAGGCCGACGAAGCCACCCTGCAAC ACGCTAAGGAGGAATGGAAGCGCAGCCAGAGGAACCAACCGCAGAAAGTT CTCAAGCTCTTCAAACAAGCCTTCACGCAAATGGAGCAATCCCTCTCCCA TGCACCCACCGGGCACGTCACAGTGCCGCCGTCGGAGCTGGACGGGCGGG TGGATGGCATTGCTGCCCGTGTCCACCTCCTAGAAGTCCATTACCACAGT GTAGCGCGCGAGGCCTCGGGCTGGATCCGGGGAGAAAAGGAGGCGGGCGA CGGCTGTTTCCAGCTCGGACTGGCATTGACGTTACTGGGGCAGAACGAAG CGGGAGGGCTGGGGGAGGCGATCCGATCCGCAGGGCACGCGATCGATGGG GTGAGTGCTGTTGCCCTGGCGGCCGTGGAGGATGGAGGGGTATTGCTGGA GGAGCCGTTGGTAGAGTGGAGCCGGGCGGTGGGTGCGGCCAAGGTGGCGT TGCTTCGACGGGCGGAAGCGAGGAAGGTCTACCTGGAGTCCTTGGTGGAG GTGGCGACGCGGTTGCACGTTAAAGGGAAATGGGTGGGGATGATAGGGAA GGAGGAGAAGCTGAATGCGGCGGAGCTGGCGTGGAGCAAGGCGGTGGAGG TGGCGGAGAAGAAGAAGGGGGAGTACGAGGAGGTTTCGGAGCGGCTGGTC AGGGATTGGGGTACATTTAGGGAAGAGAAGGCGAGGGAGGTCCACCGTGT CCTTGTGGCCTTTGCAGAGGCGCAGGTGACGAGGCACGAGAAGATGCGCA AGGCATGGGAGGAGGCAATGCCGAAGATCAGAGACGTGGATGTCATGCAC GCCTTAGACGAAAAGGCGGTCAAACCTGTCACCACTGCTTCTGCTGCTGC TGCTGCTGCTGCTGCGGGTGGTGTCAGTGGAGAGGGAGGGAAGGAGGTGG GAGAAAAGAAGGAAGGGGAACGAGAGGAGGCAGCAGCGCCAAGAGTGTAG back to top
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