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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:136379..140224 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00250.1 vs.
Match: XP_005854770.1 (lipase-related protein [Nannochloropsis gaditana CCMP526]; EKU21586.1 lipase-related protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 733.0 bits (1891), Expect = 6.300e-208 Identity = 352/547 (64.35%), Postives = 416/547 (76.05%), Query Frame = 0
Query: 1 MGQRAATSPQASRQKQTRRYRLRGPLRRLRLAAAFCLLSLCRIVAHDNQGTVPVVVELKTKPQEALEQVLWEEHQETEE-PNPFLWLKKRLRENGSFSEMLRETIYTGEIERLNPTCAVIGLLLRTVPICPFVRRLEKYILDTPPSLNKFFQHALQPTPEMNAYLPEPLAVYPDMLPAIIDERVADAERHTIYWYYAMVTRAWQHMADILRPDAAVDAGRPPLEFSDFPDWNLADGWTTGRLMKSQTGVFAVSMAKDGHLVVLMRGSTTDEDWAANFDYPFSSDEAAAAVGVPGRVHKGFLRYLEALAPLLDAEMERVAPRRVSLAGDSLGGAVAVLTGAYLTKKYGPRLEGKVEVIAI------------------------------------GTPRVGDAAFSDYYKMHINGRSPAFMGSGIRFRGKAISYNMVWEIGDFVVQVPWDCFPIPDCVNDSSETYMYAYHGGLVKITPRMMPNEDGWIKEANWIGDFQIGFQGMVATHMCSYWCWATRGLPPPYEGSNCYFPGDKNHIGPPTDICLS 511
MGQ+A P+ + R R PLR L LA A C LS C + AHD+ PV V + PQEALE +L E + EE + W+ KRLR N S SE+ R++ Y +I+RLNPTCAVIG LLRTVP+CP VR+LEKY L TPPSLN+FF + L P+PEMNAYLP+PLAVYP MLP IIDE VADAERHTIYWYYAMV AW++MADILRP+ A AGRP F +P W+LADGW TGRL++SQ+G FAV+MAK+ HLVVLMRGSTTDEDWAANF+YPF ++E+AAA+G+PGRVH+GFL YL A+APLLDAE+ER+ PRR+SLAGDS+GGAV+V+TGAYL +KY L+ KVEVIAI GTPRVGD FS +++ H+NGRSPAF+GSGIRFRGKA+ +NMVWEIGDFVVQVPWDCFP+PDCV S+ETYMY+YHGGL+KITPRMMPNEDGW++EANW+GDF+IGF+GMVATHMCSYWCWATRGLPPPYEGS CYFP D H+GP TDICLS
Sbjct: 1 MGQKAVAGPRRLLR------RARVPLRALGLAIALCFLSFCEVGAHDHLEE-PVAVVVNPLPQEALETLLEERQRGPEEGASVSAWVTKRLRGNNSLSEIFRDSYYDSDIKRLNPTCAVIGFLLRTVPVCPVVRQLEKYFLGTPPSLNQFFANTLVPSPEMNAYLPKPLAVYPSMLPDIIDEEVADAERHTIYWYYAMVALAWRNMADILRPEEARAAGRPAQTFEAYPGWHLADGWETGRLIESQSGPFAVTMAKNRHLVVLMRGSTTDEDWAANFNYPFCANESAAAIGIPGRVHQGFLEYLIAIAPLLDAEVERIKPRRISLAGDSVGGAVSVITGAYLARKYASGLDSKVEVIAIGKAKGASAELLFPQVPVKRLQILQHRPCLLLTFMLSGTPRVGDDVFSSFFREHVNGRSPAFLGSGIRFRGKAVGFNMVWEIGDFVVQVPWDCFPVPDCVGGSTETYMYSYHGGLIKITPRMMPNEDGWMEEANWLGDFKIGFKGMVATHMCSYWCWATRGLPPPYEGSKCYFPSDVKHVGPATDICLS 540
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00250.1 ID=NO09G00250.1|Name=NO09G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp CTCAACGCCAACCCTCCCTGAGGGGTTAGTAGAGGATCCAGGGGGGGGAA GCGTTGTCAATCTCGCCACTTATCACACGCATGATATTCCTTTGGGACAT ATGCCTTATTATTTCTTAAGTTCGGTGTCCTGGCGCCTATCACAGCCGCC CGCATTCCCTCATCCGCACTTCGCCAAACTAACGCTCAAAAAATCCATTC GGGAGCTCAAGAGGCAATCTCTCTACCTACACTTTCTCGTCGATTTCACC GTACGCAACCATACCATTTTTAACATACCCGCAGGCTTACACTGCATATA CCTCATCGAACGGTTGTGAGGGTGGGAGACGCACATTTCTTCCGTGCTGC CTGCAGAGGCGCTACCTGCATGCCGGCCTTTCCTTGAGATGACGCCAGTC ACTTCTTAAACCAAGCGGTGAGCTTGGAGCAGGCAGGCAGAGGATCCCTC TCCACGGTGTACACACACCTACCACACGCACTTCTACGCCTTGACGACCC CGAAAGTCGTGCCCGAGTCCCCCTCCGCGGCATGGGCCAACGAGCCGCTA CCTCTCCCCAGGCCTCTCGCCAAAAGCAAACACGACGGTACCGACTGAGG GGTCCGCTTAGGCGTTTAAGACTCGCTGCAGCGTTCTGCCTTCTAAGCCT TTGTAGAATAGTGGCCCACGACAACCAAGGCACGGTCCCTGTGGTGGTGG AGCTGAAGACAAAGCCGCAAGAAGCGTTGGAGCAAGTGCTATGGGAGGAG CACCAGGAGACGGAAGAGCCAAACCCCTTTCTCTGGCTTAAAAAGCGCCT GAGAGAGAATGGCTCTTTCAGCGAGATGTTACGGGAGACGATTTACACGG GCGAGATCGAACGGCTGAACCCGACATGTGCCGTGATAGGCTTGCTCCTC CGCACTGTACCCATCTGTCCCTTTGTGCGACGACTGGAGAAATACATCCT CGATACCCCTCCCTCCCTGAATAAATTTTTCCAACACGCTCTCCAACCCA CCCCCGAGATGAACGCCTACCTTCCCGAGCCTCTTGCTGTGTATCCGGAC ATGCTCCCGGCCATAATTGACGAACGAGTGGCGGACGCCGAGAGACATAC CATCTACTGGTACTATGCCATGGTTACGCGGGCATGGCAGCACATGGCAG ACATCCTGCGTCCGGACGCAGCCGTCGACGCAGGACGTCCCCCTCTCGAA TTCAGCGACTTCCCCGACTGGAATTTGGCGGATGGATGGACCACTGGCAG GTTAATGAAGTCGCAGACGGGTGTGTTCGCCGTCTCAATGGCGAAAGACG GGCATCTGGTGGTGTTGATGCGCGGGAGCACGACCGATGAGGACTGGGCC GCCAATTTCGACTATCCCTTCTCTTCCGACGAGGCAGCGGCGGCCGTGGG CGTCCCCGGGCGGGTCCACAAAGGCTTTCTACGGTACTTGGAAGCTCTTG CCCCGCTACTGGACGCTGAGATGGAGAGGGTGGCCCCACGGAGGGTCAGC CTGGCCGGGGATTCGCTGGGAGGGGCCGTAGCGGTCCTTACAGGGGCGTA CCTGACCAAGAAATATGGGCCCAGACTGGAGGGCAAGGTGGAAGTGATCG CCATCGGCACTCCCCGCGTGGGTGACGCCGCCTTTAGTGACTATTATAAA ATGCACATCAACGGCCGAAGCCCGGCCTTTATGGGCTCCGGCATCCGTTT TCGAGGGAAGGCTATTTCCTACAATATGGTCTGGGAAATCGGCGATTTTG TCGTTCAGGTCCCGTGGGACTGTTTTCCCATCCCCGACTGTGTAAATGAC AGCAGTGAGACGTACATGTACGCCTACCACGGAGGTCTGGTTAAGATTAC CCCCCGGATGATGCCGAATGAGGACGGATGGATCAAGGAGGCGAATTGGA TCGGGGATTTTCAGATCGGATTCCAGGGCATGGTCGCGACGCATATGTGT AGTTACTGGTGCTGGGCCACGCGCGGACTCCCCCCCCCGTACGAAGGATC CAACTGCTATTTTCCCGGTGACAAAAACCACATCGGTCCACCCACAGATA TATGCCTTTCCTCCACGTAGGGAGGGGGTGAAGGGAGGGAGGGAAAGGAA GAAGTGACTTTCCTCGACCCAGGGAGAGAGGGGGGAGGGAGGGAGGGAGG GAAAGAGGGAACGAGGGAGGTGACGGACTGTGCCATGGGGATAGACATGT AGTTGTACGAGGGGGGA back to topprotein sequence of NO09G00250.1 >NO09G00250.1-protein ID=NO09G00250.1-protein|Name=NO09G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp MGQRAATSPQASRQKQTRRYRLRGPLRRLRLAAAFCLLSLCRIVAHDNQG TVPVVVELKTKPQEALEQVLWEEHQETEEPNPFLWLKKRLRENGSFSEML RETIYTGEIERLNPTCAVIGLLLRTVPICPFVRRLEKYILDTPPSLNKFF QHALQPTPEMNAYLPEPLAVYPDMLPAIIDERVADAERHTIYWYYAMVTR AWQHMADILRPDAAVDAGRPPLEFSDFPDWNLADGWTTGRLMKSQTGVFA VSMAKDGHLVVLMRGSTTDEDWAANFDYPFSSDEAAAAVGVPGRVHKGFL RYLEALAPLLDAEMERVAPRRVSLAGDSLGGAVAVLTGAYLTKKYGPRLE GKVEVIAIGTPRVGDAAFSDYYKMHINGRSPAFMGSGIRFRGKAISYNMV WEIGDFVVQVPWDCFPIPDCVNDSSETYMYAYHGGLVKITPRMMPNEDGW IKEANWIGDFQIGFQGMVATHMCSYWCWATRGLPPPYEGSNCYFPGDKNH IGPPTDICLSST* back to topmRNA from alignment at chr9:136379..140224- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00250.1 ID=NO09G00250.1|Name=NO09G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3846bp|location=Sequence derived from alignment at chr9:136379..140224- (Nannochloropsis oceanica) CTCAACGCCAACCCTCCCTGAGGGGTTAGTAGAGGATCCAGGGGGGGGAA
GCGTTGTCAATCTCGCCACTTATCACACGCATGATATTCCTTTGGGACAT
ATGCCTTATTATTTCTTAAGTTCGGTGTCCTGGCGCCTATCACAGCCGCC
CGCATTCCCTCATCCGCACTTCGCCAAACTAACGCTCAAAAAATCCATTC
GGGAGCTCAAGAGGCAATCTCTCTACCTACACTTTCTCGTCGATTTCACC
GTACGCAACCATACCATTTTTAACATACCCGCAGGCTTACACTGCATATA
CCTCATCGAACGGTTGTGAGGGTGGGAGACGCACATTTCTTCCGTGCTGC
CTGCAGAGGCGCTACCTGCATGCCGGCCTTTCCTTGAGATGACGCCAGTC
ACTTCTTAAACCAAGCGGTGAGCTTGGAGCAGGCAGGCAGAGGATCCCTC
TCCACGGTGTACACACACCTACCACACGCACTTCTACGCCTTGACGACCC
CGAAAGTCGTGCCCGAGTCCCCCTCCGCGGCATGGGCCAACGAGCCGCTA
CCTCTCCCCAGGCCTCTCGCCAAAAGCAAACACGACGGTACCGACTGAGG
GGTCCGCTTAGGCGTTTAAGACTCGCTGCAGCGTTCTGCCTTCTAAGCCT
TTGTAGAATAGTGGCCCACGACAACCAAGGCACGGTCCCTGTGGTGGTGG
AGCTGAAGACAAAGCCGCAAGAAGCGTTGGAGCAAGTGCTATGGGAGGAG
CACCAGGAGACGGAAGAGCCAAACCCCTTTCTCTGGCTTAAAAAGCGCCT
GAGAGAGAATGGCTCTTTCAGCGAGATGTTACGGGAGACGATTTACACGG
GCGAGATCGAACGGCTGAACCCGACATGTGCCGTGATAGGCTTGCTCCTC
CGCACTGTACCCATCTGTCCCTTTGTGCGACGACTGGAGAAATGTGAGTG
AGTGGGACGTGGAGGGGCGGGGAAGGGAGAACGGAATGAGAGACAGTACG
GAATGAGTTCAGTTGGGGAGTGTCTTCAGTCATTGAATTATTTATCTTCT
ATCATTGACTGGAGCTAAGCTTTTTTCCCTTCCTCCCTCCTTCCCTCCCT
CCCTTCCTCCCTCCCTCCCTCCCTTCCCTAGACATCCTCGATACCCCTCC
CTCCCTGAATAAATTTTTCCAACACGCTCTCCAACCCACCCCCGAGATGA
ACGCCTACCTTCCCGAGCCTCTTGCTGTGTATCCGGACATGCTCCCGGCC
ATAATTGACGAACGAGTGGCGGACGCCGAGAGACATACCATCTACTGGTA
CTATGCCATGGTTACGCGGGTAAGGAGGGAGGGAGGGAAGGAGGAAAGTA
AAAAGGGGGAGAGGGAGAAGTCATGAATCACAGCGGAGGGAGTCATTGGG
ATGTAGGGTATTTGTCGACGAAAATGACGTTGCCGGCAAGGCGCATCCCT
CCCTCCCTCCCTCCCTCCCTTCCTCTTTCTTTGCAGGGCCTGATAGAGCA
CGCTCAGAAAGCCAATACCATAATCGCTGGGTGCTCCACTCAAGAGCGCA
TGAAATCTCCGGGTATCCTTCAAAGTAACTCTCCTCCCCTCCCTCCCTCC
CTTCCTCCCTTTCTCAGGCATGGCAGCACATGGCAGACATCCTGCGTCCG
GACGCAGCCGTCGACGCAGGACGTCCCCCTCTCGAATTCAGCGACTTCCC
CGACTGGAATTTGGCGGATGGATGGACCACTGGCAGGTTAATGAAGTCGC
AGACGGGTGTGTTCGCCGTCTCAATGGCGAAAGACGGGCATCTGGTGGTG
TTGATGCGCGGGAGCACGACCGATGAGGTAGGCCTCCTTCATTCTTCTCC
TTGCTCCCTCCAGCTTTCCATCCATGTATATATTCCCCTTGGGAAGCATT
GTCGTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGACTGGGCCGCC
AATTTCGACTATCCCTTCTCTTCCGACGAGGCAGCGGCGGCCGTGGGCGT
CCCCGGGCGGGTCCACAAAGGCTTTCTACGGTACTTGGAAGCTCTTGCCC
CGCTACTGGACGCTGAGATGGAGAGGGTGGCCCCACGGAGGGTCAGCCTG
GCCGGGGATTCGCTGGGAGGGGCCGTAGCGGTCCTTACAGGGGCGTACCT
GACCAAGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCGGT
AGCGGTCCTTACCGGGGCGTACCTGACCAAATGAGGGAGGGAGGGAGGGA
GGAAGGGAGGGAGGGAGGGAGGGAGGTGCTTATTAGGGCGTACCTGACCA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAACACATGT
GCCTGCAAGGGAGAAAGGCAAAGCTCGACGCTCACATCAGTCTCAATCAA
ACCTTCCCCCTCTTTTAATCCCTCCCTCCTCCCTTCCCTCCCTTGTTCCC
AGGAAATATGGGCCCAGACTGGAGGGCAAGGTGGAAGTGATCGCCATCGG
TAAGGAAATGAGGAGGAAGGGGGGGGGGGTAGGAGGAGGGCATACAGATT
TTATTTTTATTCTCTTTTCTCTTTTTCTCTACCTCTTCCTCCCTCCCTCC
CTCCCTCCCTTTCTCTCTCTCTCTCTCGGAAGACCCTTTTCATTCATCGT
TGATGACACACGCCTTCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
TCCTCCCTCCCTCCCCCTCTCAGGCACTCCCCGCGTGGGTGACGCCGCCT
TTAGTGACTATTATAAAATGCACATCAACGGCCGAAGCCCGGCCTTTATG
GGCTCCGGCATCCGTTTTCGAGGGAAGGCTATTTCCTACAATATGGGTAC
GTGTTTCCCCTGCCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTC
CTTCCCTCCTTCCCTCCTTCCCTCCCTCCTTCCCTACCTCCCTCGATTCG
TGCGTGTAGAAATTTGGCCGATGAAACCCACGCGCACTCACCTTCCCTCC
TTCCCTCCCTCCCGCCCTCCTTTCCCCCCTCCCTCCCGCCCTCCTGCCCC
CCCGCCCTCCCGCCCTCCTGTTCTCCCTCCCTTCTGCCCTCCCGCCCTCT
CTCCCTCCCGCCCGCCCCCTCAGTCTGGGAAATCGGCGATTTTGTCGTTC
AGGTCCCGTGGGACTGTTTTCCCATCCCCGACTGTGTAAATGACAGCAGT
GAGACGTACATGTACGCCTACCACGGAGGTCTGGTTAAGATTACCCCCCG
GATGATGCCGAATGAGGACGGATGGATCAAGGAGGCGAATTGGATCGGGG
ATTTTCAGATCGGATTCCAGGGCATGGTCGCGACGCATATGTGTAGTTAC
TGGTGCTGGTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TTTCCCTCCAAGGCCCATCGTGTGGTGTTATCTGTTGCTGACACCTATCC
CTCTTGCATGATGAACATGCCTTGTCCAAAGTATTCTCTTCTTGTTCACA
CCCTCCCTCCCGCCCGCACGCCCGCCCTCTTCCCCTCCCTCAGGGCCACG
CGCGGACTCCCCCCCCCGTACGAAGGATCCAACTGCTATTTTCCCGGTGA
CAAAAACCACATCGGTCCACCCACAGATATATGCCTTTCCTCCACGTAGG
GAGGGGGTGAAGGGAGGGAGGGAAAGGAAGAAGTGACTTTCCTCGACCCA
GGGAGAGAGGGGGGAGGGAGGGAGGGAGGGAAAGAGGGAACGAGGGAGGT
GACGGACTGTGCCATGGGGATAGACATGTAGTTGTACGAGGGGGGA back to topCoding sequence (CDS) from alignment at chr9:136379..140224- >NO09G00250.1 ID=NO09G00250.1|Name=NO09G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr9:136379..140224- (Nannochloropsis oceanica) ATGGGCCAACGAGCCGCTACCTCTCCCCAGGCCTCTCGCCAAAAGCAAAC ACGACGGTACCGACTGAGGGGTCCGCTTAGGCGTTTAAGACTCGCTGCAG CGTTCTGCCTTCTAAGCCTTTGTAGAATAGTGGCCCACGACAACCAAGGC ACGGTCCCTGTGGTGGTGGAGCTGAAGACAAAGCCGCAAGAAGCGTTGGA GCAAGTGCTATGGGAGGAGCACCAGGAGACGGAAGAGCCAAACCCCTTTC TCTGGCTTAAAAAGCGCCTGAGAGAGAATGGCTCTTTCAGCGAGATGTTA CGGGAGACGATTTACACGGGCGAGATCGAACGGCTGAACCCGACATGTGC CGTGATAGGCTTGCTCCTCCGCACTGTACCCATCTGTCCCTTTGTGCGAC GACTGGAGAAATACATCCTCGATACCCCTCCCTCCCTGAATAAATTTTTC CAACACGCTCTCCAACCCACCCCCGAGATGAACGCCTACCTTCCCGAGCC TCTTGCTGTGTATCCGGACATGCTCCCGGCCATAATTGACGAACGAGTGG CGGACGCCGAGAGACATACCATCTACTGGTACTATGCCATGGTTACGCGG GCATGGCAGCACATGGCAGACATCCTGCGTCCGGACGCAGCCGTCGACGC AGGACGTCCCCCTCTCGAATTCAGCGACTTCCCCGACTGGAATTTGGCGG ATGGATGGACCACTGGCAGGTTAATGAAGTCGCAGACGGGTGTGTTCGCC GTCTCAATGGCGAAAGACGGGCATCTGGTGGTGTTGATGCGCGGGAGCAC GACCGATGAGGACTGGGCCGCCAATTTCGACTATCCCTTCTCTTCCGACG AGGCAGCGGCGGCCGTGGGCGTCCCCGGGCGGGTCCACAAAGGCTTTCTA CGGTACTTGGAAGCTCTTGCCCCGCTACTGGACGCTGAGATGGAGAGGGT GGCCCCACGGAGGGTCAGCCTGGCCGGGGATTCGCTGGGAGGGGCCGTAG CGGTCCTTACAGGGGCGTACCTGACCAAGAAATATGGGCCCAGACTGGAG GGCAAGGTGGAAGTGATCGCCATCGGCACTCCCCGCGTGGGTGACGCCGC CTTTAGTGACTATTATAAAATGCACATCAACGGCCGAAGCCCGGCCTTTA TGGGCTCCGGCATCCGTTTTCGAGGGAAGGCTATTTCCTACAATATGGTC TGGGAAATCGGCGATTTTGTCGTTCAGGTCCCGTGGGACTGTTTTCCCAT CCCCGACTGTGTAAATGACAGCAGTGAGACGTACATGTACGCCTACCACG GAGGTCTGGTTAAGATTACCCCCCGGATGATGCCGAATGAGGACGGATGG ATCAAGGAGGCGAATTGGATCGGGGATTTTCAGATCGGATTCCAGGGCAT GGTCGCGACGCATATGTGTAGTTACTGGTGCTGGGCCACGCGCGGACTCC CCCCCCCGTACGAAGGATCCAACTGCTATTTTCCCGGTGACAAAAACCAC ATCGGTCCACCCACAGATATATGCCTTTCCTCCACGTAG back to top
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