|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1285168..1288483 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04390.1 vs.
Match: EWM26902.1 (ubiquitin-like domain-containing ctd phosphatase 1 [Nannochloropsis gaditana]) HSP 1 Score: 603.2 bits (1554), Expect = 6.800e-169 Identity = 314/422 (74.41%), Postives = 352/422 (83.41%), Query Frame = 0
Query: 49 SASASASAPDSSAALSMGIDDNTLLNEAHVREADVQSQELYELVAKWRGKEIDLGTLPGGCTIANIKILLEAKTRVLPERQKLIGLSVQGGKAAKDENTLEQLVLKGKRGPVKFMLMGTPEAESFVDPSEKTGLPEVFDDFELDVTAISEEWRRSVQNSENLRKFTAKTQVHLINPPRQGKRLLVLDLDHTLLDFSSREEVIDRLSMAEAASIMKRPHLDAFLAAVYPFYDLVAWSQTSWRWLEIKMVELGLLTHPAYRFCFVLDKTSMFHVESTKGNGSLFKHQVKPLQLIWTKFPHWNETNSVHVDDLSRNFALNTGNGVKIKAYYRNAEGASEDKELVYLGRYLVRLAT--CGPAAAGAGTTVVGVGDAGGEGGGG------------GENGG---------KDHRYWRDEAKRREGGG 448
S+ +S S+ ++A++ +DDN LL EA V EA VQSQ ELVAKWRGKEI+LG++P GCTIAN+KI+LEAKTRVLPE+QK+IGL++QGGK AK+E+TL+QLV+K KRGPV+FML+GTPEAE FVDP EK LPEVFDDF+LDVTA+SE WRRSVQNSENLRKFTAKTQVHLINPPR GKRLLVLDLDHTLLDFSSRE+VIDRL MAEAAS+MKRPHLDAFLAAVYP+YDLVAWSQTSWRWLEIKMVELGLLTHPAYRFCFVLDKTSMFHVESTKG+GSLFKHQVKPLQLIWTKFP W+E NS+HVDDLSRNFALNTGNG+KIKAYYRNAE ASED+EL+YLGRYLV +AT PA+ G GT DAG GGGG GE G +DH+ WRDEAK GGG
Sbjct: 27 SSLSSTSSFSQNSAVAFEMDDNLLLEEARVPEAQVQSQRSLELVAKWRGKEINLGSIPDGCTIANLKIILEAKTRVLPEKQKIIGLTIQGGKVAKNEHTLDQLVVKDKRGPVRFMLIGTPEAEVFVDPQEKESLPEVFDDFDLDVTALSEGWRRSVQNSENLRKFTAKTQVHLINPPRDGKRLLVLDLDHTLLDFSSREDVIDRLPMAEAASVMKRPHLDAFLAAVYPYYDLVAWSQTSWRWLEIKMVELGLLTHPAYRFCFVLDKTSMFHVESTKGDGSLFKHQVKPLQLIWTKFPQWDENNSIHVDDLSRNFALNTGNGLKIKAYYRNAERASEDRELLYLGRYLVNIATRPVAPASGGGGTPGGAGSDAGSGGGGGPGSRGRGWRGGLGEGGQGRSGTNQSLRDHKNWRDEAK---GGG 445
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04390.1 ID=NO08G04390.1|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp ATGGTCCACTGCCCTCACCTTACCTCCACTCAAACCCAAAGACGCTACGT GGAGATGGAGGAGGACCAAAATCCTACAGCGTCAGACAGCTGCGGCTATG TGAGCCGCACCAGTGGTTTCCCTCCTTTTCATACCTCTTCCGCTTCAGCC TCAGCTTCTGCTTCTGCCCCTGATAGTTCTGCTGCCTTATCGATGGGCAT TGACGACAACACCCTCCTAAATGAGGCTCACGTTAGAGAGGCTGACGTAC AGTCTCAAGAGCTGTATGAATTGGTGGCTAAATGGCGGGGCAAGGAGATC GATCTGGGGACCTTGCCGGGAGGCTGCACCATTGCCAACATCAAAATCCT TCTAGAAGCAAAAACTCGCGTTCTCCCCGAAAGACAGAAGCTTATCGGCT TGTCTGTGCAAGGGGGAAAGGCTGCCAAGGACGAGAACACGTTGGAGCAG CTGGTGTTGAAGGGCAAGAGGGGGCCTGTTAAGTTTATGCTCATGGGCAC GCCGGAGGCGGAGTCCTTCGTGGATCCGAGCGAGAAGACAGGCTTGCCGG AGGTTTTCGACGACTTCGAGCTGGACGTCACAGCCATATCAGAGGAGTGG CGGCGCTCGGTACAGAACAGCGAGAACCTACGCAAATTCACGGCCAAGAC GCAGGTGCACCTCATCAACCCCCCACGCCAAGGGAAGCGGCTGCTGGTGC TGGACCTTGACCACACCCTCCTCGACTTTAGCTCTCGGGAGGAGGTCATC GATCGCCTGTCTATGGCCGAGGCTGCCAGCATCATGAAGCGGCCTCACCT GGACGCCTTTCTGGCCGCCGTCTACCCCTTCTACGACCTGGTGGCCTGGA GCCAGACGTCATGGCGGTGGCTGGAAATCAAGATGGTGGAGCTCGGCCTC CTGACCCACCCCGCGTACAGGTTCTGCTTCGTCCTGGATAAGACGAGCAT GTTCCACGTCGAGTCCACCAAGGGCAACGGAAGTCTCTTCAAACACCAGG TGAAGCCGTTGCAGCTTATTTGGACCAAATTCCCCCACTGGAACGAAACC AACTCCGTCCACGTCGACGACCTCTCCCGCAACTTTGCCTTGAACACGGG CAATGGCGTAAAGATCAAGGCCTACTACCGGAACGCCGAAGGGGCGAGCG AAGACAAGGAGCTCGTCTACCTCGGGCGGTATCTGGTCCGACTCGCCACG TGCGGTCCAGCAGCGGCAGGAGCAGGAACAACTGTCGTGGGAGTAGGGGA TGCAGGGGGGGAAGGGGGGGGAGGAGGAGAGAATGGAGGGAAAGACCACA GATATTGGCGGGACGAGGCCAAGAGAAGAGAGGGCGGAGGAGAAGGAGGG GGTGGGAGCGGCGGTGGAGGTGGAGGGGCAAGTAGTGGGGGCAGTGCATG A back to topprotein sequence of NO08G04390.1 >NO08G04390.1-protein ID=NO08G04390.1-protein|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp MVHCPHLTSTQTQRRYVEMEEDQNPTASDSCGYVSRTSGFPPFHTSSASA SASASAPDSSAALSMGIDDNTLLNEAHVREADVQSQELYELVAKWRGKEI DLGTLPGGCTIANIKILLEAKTRVLPERQKLIGLSVQGGKAAKDENTLEQ LVLKGKRGPVKFMLMGTPEAESFVDPSEKTGLPEVFDDFELDVTAISEEW RRSVQNSENLRKFTAKTQVHLINPPRQGKRLLVLDLDHTLLDFSSREEVI DRLSMAEAASIMKRPHLDAFLAAVYPFYDLVAWSQTSWRWLEIKMVELGL LTHPAYRFCFVLDKTSMFHVESTKGNGSLFKHQVKPLQLIWTKFPHWNET NSVHVDDLSRNFALNTGNGVKIKAYYRNAEGASEDKELVYLGRYLVRLAT CGPAAAGAGTTVVGVGDAGGEGGGGGENGGKDHRYWRDEAKRREGGGEGG GGSGGGGGGASSGGSA* back to topmRNA from alignment at chr8:1285168..1288483+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04390.1 ID=NO08G04390.1|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=3316bp|location=Sequence derived from alignment at chr8:1285168..1288483+ (Nannochloropsis oceanica) ATGGTCCACTGCCCTCACCTTACCTCCACTCAAACCCAAAGACGCTACGT
GGAGATGGAGGAGGACCAAAATCCTACAGCGTCAGACAGCTGCGGCTATG
TGAGCCGCACCAGTGGTTTCCCTCCTTTTCATACCTCTTCCGCTTCAGCC
TCAGCTTCTGCTTCTGCCCCTGATAGTTCTGCTGCCTTATCGATGGGTAG
GTACGTGAATGAAGGGCATGACACGACATTGTCCATAAACCATGAGTCGA
GTTGTCTGACGCTGCAGGCTCGCAGGCTGCAAGCGGACTTTCGTTTCCTT
CTTTTCCGCGCTATTCATCCCCTCCCTCTCCCCTCCCTCCCTCCCTCCCT
CCCTCCTAACCTTCCTCTTCTCTCACAGGCATTGACGACAACACCCTCCT
AAATGAGGCTCACGTTAGAGAGGCTGACGTACAGTCTCAAGAGCTGTATG
AATTGGTGGCTAAATGGCGGGGCAAGGAGATCGATCTGGGGACCTTGCCG
GGAGGGTGTGTAGGAGGGAGAGGAGAGGGAGGGGAGGGAGAAAGGGAGGA
AGGGAATGCTGCCATCTTTCATGACGAAAGGGAGACCATAAGCAAGTGTT
GATTTATTTAAGTTAAGGACGTTTCGGAATGCGTACATGCGTCTATCCTT
GCCTCCCTGTGCTGTCACCCTCTCACACGCCCCCACCCTCCCTCCTTCCC
CTCCAGCTGCACCATTGCCAACATCAAAATCCTTCTAGAAGCAAAAACTC
GCGTTCTCCCCGAAAGACAGAAGCTTATCGGCTTGTCTGTGCAAGGGGGA
AAGGCTGCCAAGGACGAGAACACGTTGGAGCAGCTGGTGTTGAAGGGCAA
GAGGGGGCCTGTTAAGTTTATGCTCATGGGCACGCCGGAGGTAGGGAGGG
AGGTAGGGAGGGAGGAATAGTTGAGGACGGGACTAGCAAACGATGAGTCT
TTTCCTTCGTTCTTGGGATCTCTCGGTGATGCTTACATTTTGTGCGTGCT
GCCCTCTCAACACCATCTTTGTCTCTTCCCTCCCTCGCTCCCTCGCTCCC
TCCTCCCCTCCCTTGAGTAGGCGGAGTCCTTCGTGGATCCGAGCGAGAAG
ACAGGCTTGCCGGAGGTTTTCGACGACTTCGAGCTGGACGTCACAGCCAT
ATCAGAGGAGTGGCGGCGCTCGGTACAGAACAGCGAGAACCTACGCAAGT
GCGTTGATTTCCTCCCCTCCTCCCTCCCTCCCTCCCCCCCTCCATCCCCT
TTCTATTCTTTCCTTGATAAAATATTTTCACTTCTCATCGCTTCTTTCCT
CCTCCCCTTCCTCCCTCTCAAGATTCACGGCCAAGACGCAGGTGCACCTC
ATCAACCCCCCACGCCAAGGGAAGCGGCTGCTGGTGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAATGAGAGAGGAAGGAAGCGATGGGAGA
AGAAATAAAAGCACTGAGGTGCGATTGGACGATCTCGTATCTTCCTCATC
CCCGTCCCCTCTCCCTCCATCCCTCCCTCTCTCCCTCCCTCTTGTGTCTC
GCGCAGGTGCTGGACCTTGACCACACCCTCCTCGACTTTAGCTCTCGGGA
GGAGGTCATCGATCGGTGAGGAAGGGAGGAAGGGAAGGAGAGCAGGAGAG
GTGAAGGGCCACAGACTTGAATAGACTTGCCTTTCCTCTCATCGTACATG
CATACTGTTTTCCCCGTTACTCTGGTTCCTCCCACCGCGCTCCTTCCTCT
CCATCTCCCTTGTCAGCTACTCGGACCAGCTGCTTCCCATATAGACGGAC
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCGTCACACCCTCCCTCC
CTCCTCCCTCCCTCCCTCGCCCTCCAGCCTGTCTATGGCCGAGGCTGCCA
GCATCATGAAGCGGCCTCACCTGGACGCCTTTCTGGCCGCCGTCTACCCC
TTCTACGACCTGGTGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAAAG
AAAAAAGCAGGGATGGAAGAGGATGGGAGGAGGTAAACGAGGGAGGGAAC
GAGGGAGATATTTGTCCGCCGACCTCCACCCCCCTACTTGTTTGACCCCT
ACATATTTCACAAGAGCCCTAAAAATATGCATTAATTCCAACACTCACCC
ATTCACACCCCTTTTCCCTCACTCTCACTCCCACTCGGGCTGCTGCTAGG
CCTGGAGCCAGACGTCATGGCGGTGGCTGGAAATCAAGATGGTAAGGAAG
TGAGGAGGGAGGGGAGGACAGGGAGTGGTTGTGCTGGAGAGAGGGAGGCT
ACAGCAGGTGGATATGTATTCACCATTTTCCCCCCCTCTCTCCCTCCCTC
CCTCCCACCCTTTCTCCGTCCTCCCTCCCTCCCTCCCTTTCTCCGTCCTC
TAGGTGGAGCTCGGCCTCCTGACCCACCCCGCGTACAGGTTCTGCTTCGT
CCTGGATAAGACGAGCATGTTCCACGTCGAGTCCACCAAGGGCAACGGAA
GTCTCTTCAAACACCAGGTCGGGGGGGAAGGAGGAAAGACAGCAGGAAGG
CAGGCAGGGAGGGAGGGAGGGACGAAGGAATCCTTTGGATTTGTTCCGAG
CTTCCTGGATGGCTCACTACCTCGATCCGATCCACCTGACCCTTCATGTC
CTCGCCTTACTTGTGCTTGCCCCGTCAAGACAGCGCTTTCGGGAGCCCCT
TCCTTACCTTCCCCCCCCCGTCCTTGCAGGTGAAGCCGTTGCAGCTTATT
TGGACCAAATTCCCCCACTGGAACGAAACCAACTCCGTCCACGTCGACGA
CCTCTCCCGCAACTTTGCCTTGAACACGGGTAGGGGAGGAAGGAGGGAAG
GGGGAAAAGGAGGGAAGGAGGGAGGAAAGGAAGGAAAGAAAATGGGGGGG
CAGAAAGAAGACAGAGAAATCGACATTCGCGCCATCAATTGTGGGTGTAG
CTTGAATCTCAGCTCTGCGTATATCGGTACTCATTCCAGGCTCCCTCCCT
CCCTCCCGCCCCAGGCAATGGCGTAAAGATCAAGGCCTACTACCGGAACG
CCGAAGGGGCGAGCGAAGACAAGGAGCTCGTCTACCTCGGGCGGTATCTG
GTCCGACTCGCCACGTGCGGTCCAGCAGCGGCAGGAGCAGGAACAACTGT
CGTGGGAGTAGGGGATGCAGGGGGGGAAGGGGGGGGAGGAGGAGAGAATG
GAGGGAAAGACCACAGATATTGGCGGGACGAGGCCAAGAGAAGAGAGGGC
GGAGGAGAAGGAGGGGGTGGGAGCGGCGGTGGAGGTGGAGGGGCAAGTAG
TGGGGGCAGTGCATGA back to topCoding sequence (CDS) from alignment at chr8:1285168..1288483+ >NO08G04390.1 ID=NO08G04390.1|Name=NO08G04390.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr8:1285168..1288483+ (Nannochloropsis oceanica) ATGGTCCACTGCCCTCACCTTACCTCCACTCAAACCCAAAGACGCTACGT GGAGATGGAGGAGGACCAAAATCCTACAGCGTCAGACAGCTGCGGCTATG TGAGCCGCACCAGTGGTTTCCCTCCTTTTCATACCTCTTCCGCTTCAGCC TCAGCTTCTGCTTCTGCCCCTGATAGTTCTGCTGCCTTATCGATGGGCAT TGACGACAACACCCTCCTAAATGAGGCTCACGTTAGAGAGGCTGACGTAC AGTCTCAAGAGCTGTATGAATTGGTGGCTAAATGGCGGGGCAAGGAGATC GATCTGGGGACCTTGCCGGGAGGCTGCACCATTGCCAACATCAAAATCCT TCTAGAAGCAAAAACTCGCGTTCTCCCCGAAAGACAGAAGCTTATCGGCT TGTCTGTGCAAGGGGGAAAGGCTGCCAAGGACGAGAACACGTTGGAGCAG CTGGTGTTGAAGGGCAAGAGGGGGCCTGTTAAGTTTATGCTCATGGGCAC GCCGGAGGCGGAGTCCTTCGTGGATCCGAGCGAGAAGACAGGCTTGCCGG AGGTTTTCGACGACTTCGAGCTGGACGTCACAGCCATATCAGAGGAGTGG CGGCGCTCGGTACAGAACAGCGAGAACCTACGCAAATTCACGGCCAAGAC GCAGGTGCACCTCATCAACCCCCCACGCCAAGGGAAGCGGCTGCTGGTGC TGGACCTTGACCACACCCTCCTCGACTTTAGCTCTCGGGAGGAGGTCATC GATCGCCTGTCTATGGCCGAGGCTGCCAGCATCATGAAGCGGCCTCACCT GGACGCCTTTCTGGCCGCCGTCTACCCCTTCTACGACCTGGTGGCCTGGA GCCAGACGTCATGGCGGTGGCTGGAAATCAAGATGGTGGAGCTCGGCCTC CTGACCCACCCCGCGTACAGGTTCTGCTTCGTCCTGGATAAGACGAGCAT GTTCCACGTCGAGTCCACCAAGGGCAACGGAAGTCTCTTCAAACACCAGG TGAAGCCGTTGCAGCTTATTTGGACCAAATTCCCCCACTGGAACGAAACC AACTCCGTCCACGTCGACGACCTCTCCCGCAACTTTGCCTTGAACACGGG CAATGGCGTAAAGATCAAGGCCTACTACCGGAACGCCGAAGGGGCGAGCG AAGACAAGGAGCTCGTCTACCTCGGGCGGTATCTGGTCCGACTCGCCACG TGCGGTCCAGCAGCGGCAGGAGCAGGAACAACTGTCGTGGGAGTAGGGGA TGCAGGGGGGGAAGGGGGGGGAGGAGGAGAGAATGGAGGGAAAGACCACA GATATTGGCGGGACGAGGCCAAGAGAAGAGAGGGCGGAGGAGAAGGAGGG GGTGGGAGCGGCGGTGGAGGTGGAGGGGCAAGTAGTGGGGGCAGTGCATG A back to top
|