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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1212691..1216679 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04210.1 vs.
Match: ETP43022.1 (hypothetical protein F442_10106 [Phytophthora parasitica P10297]) HSP 1 Score: 437.2 bits (1123), Expect = 7.100e-119 Identity = 233/492 (47.36%), Postives = 314/492 (63.82%), Query Frame = 0
Query: 20 LDALVSFFGSWVPLADKTVYLTVPGMDEALAPLGATLGFEIGMLKYVLAMFLAYPLSGILNILPSANAKHAFSLVVGLWYAQEIFGNQWVHSFLSSAVSYLIVCFGPRKHIATLVFLFTMTYMSVSHLYRLYVDYLGWSLDFTGPQMILTIKLSSFAYNVYDGVVDLDTISKPQE-NKLKIRVFKERLRYAITSIPSPLAFFGYVYSFSTFLAGPAFEYSDYVSVIDGSAFAKKGGKKGGKEGGAPSSLLAALWRLLQGVLCLALHLVGSAKFSLGNVLSKEVLAMPFFERWLFTLIALFFCRMKYYFAWKVAEGSCVVAGFGFEGYTEDGSVKGWNGISNMDILGFETATNTAEASKAWNKGTQKWLQRYVYFRNSESLLITYFVSAFWHGFYPGYYLFFFSIALVQTVQRAWQKKVSPYFTSSIPT------LYHLLCIVVFSAYINYFSIVFQVLAWDRAMAVWKSSHYWGHLATAAAFALTSVLPSPK 505
+D +V P A+ L + + L ATLG L YVL +F AYPL+ + +LP A+ KH F +V+G+ AQ + G+ WVHSF+SS ++YLIV FGP KH +VFLF M YMS SH+YRLYVDY+GW+LDFTGPQM+L IKL+SFAYN YDGVVD K E + K +V++ R + AI IPS L FFGYVYSF+TFLAGPAFE +Y+ V G F G K PSS+LAA + L G L +A V + L N+ +V A P F + I L FC+ KYY AWK+AEG+ V+ GFGFEG+++DGS +GWNG+SNMDILGFE + + AS+AWNKGTQ WL+RYVY R SL+ TYF+SAFWHGFYPGYY+FF S+ L V R K++ P F + + +Y +L ++ ++YF + FQ ++W+ ++A K++++ GH+A + + S +P+PK
Sbjct: 1 MDRVVDIVEHLQPYAELATPLDFSFLHAKVDELSATLGLGSDQLCYVLCLFAAYPLAVVYKLLPGASLKHVFDVVLGVSIAQFVLGSGWVHSFISSFLTYLIVKFGPSKHAPGIVFLFNMLYMSASHIYRLYVDYMGWTLDFTGPQMLLVIKLTSFAYNYYDGVVDKTFEKKGAEMSPGKKKVYESRQKLAINEIPSLLEFFGYVYSFTTFLAGPAFEIREYLDVTSGKKFLVDGKYK------QPSSVLAAFSKFLVGSLLMAAFAVYGPMYPLSNLHDPKVAAQPLFYQIRDLYITLIFCKAKYYSAWKIAEGATVLCGFGFEGFSKDGSSRGWNGVSNMDILGFEFSQSIRAASRAWNKGTQNWLERYVYTRTGNSLMATYFISAFWHGFYPGYYIFFMSLPLATAVNRLAFKRLRPRFIEADGSFGAKKKIYDVLSYLLTLFAMHYFVMPFQAMSWEHSLASLKNTYFVGHIAAVVLYIVFSCIPAPK 486
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04210.1 ID=NO08G04210.1|Name=NO08G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp TGCTTCTTTCTTGATTGCCCTTGAAGGTCGGACATGCGGTGCGTACTTAA GACTCAACATGTGTCATGCCTTGCAGTGCTCTTTTAGGCTGTAGCAGGGC ATGTACCTAAACACAATGTCACGCACAGCGTCTGGTGCAAGAAGCTGCTT GCTATTTGGGGGGGCGGTGTTGCAACATCAAGTGATGGTTGTCCAAGCCC GACTAGGGGGAATCTAGCTTCACCCATCCGCTTGACTCGAGGCATCAGTC CATCGCGCATTTTATGTGAGCGTGCTCGAAATTCTTTCACCCCATTTGCC CCTTCTACCTTAATTTTACTTGCTGTCACAGGCCTAGCCACCCTTCTTCT CAATCACGCTCCACTCAACCCTCTCTTCCCTCCAATGACTCCTTCTCCTC TCCCCCCCCAAAAAGGAGCCATGACGTTCCACGAGAAGCACCTCGATGCC TTGGTGTCCTTCTTCGGAAGCTGGGTGCCATTAGCGGATAAGACGGTCTA CCTGACTGTGCCTGGTATGGACGAGGCACTGGCACCCTTGGGGGCGACCC TGGGCTTCGAGATCGGCATGCTCAAGTATGTACTGGCCATGTTCCTTGCC TACCCGCTGTCAGGCATCCTTAATATCTTACCATCGGCCAACGCTAAGCA TGCCTTCTCCTTGGTGGTGGGCTTGTGGTACGCGCAGGAGATTTTTGGCA ACCAGTGGGTGCATTCGTTCCTCTCCTCGGCTGTGTCGTACCTCATAGTC TGTTTCGGCCCCCGGAAGCATATCGCTACGCTTGTCTTCCTCTTCACCAT GACGTACATGAGTGTCAGCCACCTGTACCGCCTCTACGTAGACTACTTGG GCTGGTCGCTGGACTTCACTGGTCCACAGATGATCTTGACCATCAAGCTT TCCTCGTTTGCCTACAACGTTTATGACGGCGTGGTGGACCTCGACACCAT CTCCAAGCCCCAGGAGAACAAGCTCAAGATCCGGGTATTTAAGGAGCGGC TCCGCTACGCCATCACCTCCATCCCCTCCCCCTTGGCCTTTTTCGGCTAC GTCTACTCCTTCTCCACCTTTTTGGCAGGCCCGGCATTCGAGTACTCAGA CTACGTCTCAGTCATCGACGGCTCGGCCTTTGCCAAGAAGGGAGGGAAGA AGGGAGGGAAGGAGGGTGGGGCGCCCTCCTCGTTGCTGGCTGCGTTGTGG CGTCTGCTACAGGGCGTCCTGTGCCTGGCCCTCCACCTCGTCGGCTCGGC CAAGTTCAGCCTCGGCAATGTCCTCTCCAAGGAAGTCCTGGCCATGCCCT TCTTCGAGCGCTGGCTCTTCACTCTCATCGCCCTCTTCTTCTGCCGAATG AAGTACTACTTCGCTTGGAAGGTGGCGGAAGGATCGTGTGTCGTGGCCGG CTTCGGTTTTGAAGGCTACACTGAGGATGGATCGGTGAAGGGGTGGAACG GTATTTCTAATATGGACATATTAGGCTTCGAGACCGCCACTAATACCGCC GAGGCCTCCAAGGCCTGGAACAAAGGCACCCAAAAATGGCTGCAGCGATA CGTCTATTTCCGCAACAGCGAGTCGCTCCTCATCACCTACTTCGTCTCCG CCTTCTGGCATGGTTTTTACCCGGGCTACTATCTCTTCTTCTTCTCCATC GCGCTCGTGCAGACCGTGCAGCGGGCGTGGCAGAAGAAGGTGTCCCCTTA CTTCACCTCCTCCATCCCCACCCTCTATCACCTGCTCTGCATCGTCGTCT TCTCCGCCTACATCAATTACTTCTCGATCGTCTTCCAGGTCCTGGCCTGG GACCGAGCGATGGCCGTGTGGAAGAGCTCGCACTACTGGGGTCACCTCGC GACCGCGGCTGCCTTTGCACTCACGTCCGTGCTGCCCTCTCCAAAGAAGG AGGCGGGGAAGAAGGCGTAGAGGGAGAGAGGGAGGGAGGAGGGAGGGAGG GAGGGAGGGAG back to topprotein sequence of NO08G04210.1 >NO08G04210.1-protein ID=NO08G04210.1-protein|Name=NO08G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp MTPSPLPPQKGAMTFHEKHLDALVSFFGSWVPLADKTVYLTVPGMDEALA PLGATLGFEIGMLKYVLAMFLAYPLSGILNILPSANAKHAFSLVVGLWYA QEIFGNQWVHSFLSSAVSYLIVCFGPRKHIATLVFLFTMTYMSVSHLYRL YVDYLGWSLDFTGPQMILTIKLSSFAYNVYDGVVDLDTISKPQENKLKIR VFKERLRYAITSIPSPLAFFGYVYSFSTFLAGPAFEYSDYVSVIDGSAFA KKGGKKGGKEGGAPSSLLAALWRLLQGVLCLALHLVGSAKFSLGNVLSKE VLAMPFFERWLFTLIALFFCRMKYYFAWKVAEGSCVVAGFGFEGYTEDGS VKGWNGISNMDILGFETATNTAEASKAWNKGTQKWLQRYVYFRNSESLLI TYFVSAFWHGFYPGYYLFFFSIALVQTVQRAWQKKVSPYFTSSIPTLYHL LCIVVFSAYINYFSIVFQVLAWDRAMAVWKSSHYWGHLATAAAFALTSVL PSPKKEAGKKA* back to topmRNA from alignment at chr8:1212691..1216679- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04210.1 ID=NO08G04210.1|Name=NO08G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=3989bp|location=Sequence derived from alignment at chr8:1212691..1216679- (Nannochloropsis oceanica) TGCTTCTTTCTTGATTGCCCTTGAAGGTCGGACATGCGGTGCGTACTTAA
GACTCAACATGTGTCATGCCTTGCAGTGCTCTTTTAGGCTGTAGCAGGGC
ATGTACCTAAACACAATGTCACGCACAGCGTCTGGTGCAAGAAGCTGCTT
GCTATTTGGGGGGGCGGTGTTGCAACATCAAGTGATGGTTGTCCAAGCCC
GACTAGGGGGAATCTAGCTTCACCCATCCGCTTGACTCGAGGCATCAGTC
CATCGCGCATTTTATGTGAGCGTGCTCGAAATTCTTTCACCCCATTTGCC
CCTTCTACCTTAATTTTACTTGCTGTCACAGGCCTAGCCACCCTTCTTCT
CAATCACGCTCCACTCAACCCTCTCTTCCCTCCAATGACTCCTTCTCCTC
TCCCCCCCCAAAAAGGAGCCATGACGTTCCACGAGAAGCACCTCGATGCC
TTGGTGTCCTTCTTCGGAAGCTGGGTGCCATTAGCGGATAAGACGGTCTA
CCTGACTGTGCCTGGTATGGACGAGGCACTGGCACCCTTGGGGGCGACCC
TGGGCTTCGAGATCGGCATGCTCAAGGTGAGGAAGTGAGACGTAACGGAG
GAGGGAGGGAGGGGGGAACGGATTCATGTAAGGAGGCTTTGGTGATTAAT
TTGTGCTTATTTGCAAATATAGTACTACGTGGAGGGCCTCTGAACGTTCA
AGGCGATCTCGCTCATCTATCCTTTCTCCCTCCCTCCCTCCCTCTCTCCC
TGCTTCCCCCACACCCACTGTAGTATGTACTGGCCATGTTCCTTGCCTAC
CCGCTGTCAGGCATCCTTAATATCTTACCATCGGCCAACGCTAAGCATGC
CTTCTCCTTGGTGGTGGGCTTGTGGTACGCGCAGGAGATTTTTGGCAACC
AGGTAGGGAGCGGTCGAGGGAGGGAGGGAGGGAGGAGGGATGGGAAGGGG
GGAAGGGAGGGAAAGGGGAGCAACAGATGTTGAATATTGAGATTAATTCA
TCATGCGTGTATGTAGCTAGCAGCCGTTCGATCTTCCAACCGTCCCCTTC
CGCCCTCCCTCCCTTCTCCCTCAGTGGGTGCATTCGTTCCTCTCCTCGGC
TGTGTCGTACCTCATAGTCTGTTTCGGCCCCCGGAAGCATATCGCTACGC
TTGTCTTCCTCTTCACCATGACGTACATGAGTGTCAGCCACCTGTACCGC
CTCTACGTAGACTACTTGGGCTGGTCGCTGGTAGGGAGGGAGGGAGGGAG
GAAGGGAGGGAGGGAGGGAGGAGGGCAGGGCGGGCGGAAGCTCACTTCAA
AATCTCCTTTTGCACCGAGACACCCGACACTTTCCTTACCCTTCCATATC
TCTTCTTTCCTCCTTCTCTCTCTCCACATGATCCTGACGATCAAGCTCTC
CTCGTTTACTGGCCATTCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCC
CTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCTCCAG
GACTTCACTGGTCCACAGATGATCTTGACCATCAAGCTTTCCTCGTTTGC
CTACAACGTTTATGACGGCGTGGTGGACCTCGACACCATCTCCAAGCCCC
AGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGGGGGAGAATGACGTAAAATAAGAGTTTCAGCTGGGA
AGCTGCTCAGGTTTTGATTGGTCGTCTTTCCTGCTTCCCTCCCTCCCTCC
CTTCCTCCTTCGCTTCCCGCCTCCCTCCCTCCCTCAGGAGAACAAGCTCA
AGATCCGGGTATTTAAGGAGCGGCTCCGCTACGCCATCACCTCCATCCCC
TCCCCCTTGGCCTTTTTCGGCTACGTCTACTCCTTCTCCACCTTTTTGGC
AGGTACGTCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCTGCAA
GCCTCGACCCCGCGTATGAAGACCGCGCTTCGATCACTTCAGTCATCCAC
CCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCAGGCCCGGCATTC
GAGTACTCAGACTACGTCTCAGTCATCGACGGCTCGGCCTTTGCCAAGAA
GGGAGGGAAGAAGGGAGGGAAGGAGGGTGGGGCGCCCTCCTCGTTGCTGG
CTGCGTTGTGGCGTCTGCTACAGGTAGGATGACGAGGGAGGGAGGGAGGT
GCTGACACCCTTCCTTCCTTTGTCAGTCCACATCCTCCCTACCTCTCTCT
ATCTCTAAATTCTGCCCCCTGATGTTTCTGCCTCCTCTCTTTTTCTTCAT
TTTGCCCCCTGATGTTTCTCGTACGCAGGGCGTCCTGTGCCTGGCCCTCC
ACCTCGTCGGCTCGGCCAAGTTCAGCCTCGGCAATGTCCTCTCCAAGGAA
GGTCAGTCCCTCCCTCCCTCCCTCCCACAATGCCTTCCTCTCTAAACATG
CTCACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCTTCCTTGCCC
CCTACCTTGCCCCAAGTCCTGGCCATGCCCTTCTTCGAGCGCTGGCTCTT
CACTCTCATCGCCCTCTTCTTCTGCCGAATGAAGTACTACTTCGCTTGGA
AGGTATCTCCTCCTCCCCCCCTCCCTCCTTTCCTCCCTCCCTTCCTCCTC
TTCATGTCTTTCTCTCATCCTCACTAAAAATGAACAGGTGGCGGAAGGAT
CGTGTGTCGTGGCCGGCTTCGGTTTTGAAGGTACGTCCACCCTTCCCTCC
TTCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCTCTCACCTAGCCTCCCTC
CCTCCCTCCCTTTCTCCCTCCCTGCCTCTTTCCCTCCAGGCTACACTGAG
GATGGATCGGTGAAGGGGTGGAACGGTATTTCTAATATGGACATATTAGG
CTTCGAGACCGCCACTAATACCGCCGAGGCCTCCAAGGCCTGGAACAAAG
GTCAGGAGGAGCTCTGGATACATCCCGAGACCTGCCCTCCCTTCCTCCCT
CCCTCCCTTCCGCTCTCCCTCCCTCCCTCCCTCCTTCATTTCATCGTCAT
ACCTTCTTGTCATCCGACATCTACCCCGACCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCCCCGCAGGCACCCAAAAATGGCTGCAGCGATACGTCTATT
TCCGCAACAGCGAGTCGCTCCTCATCACCTACTTCGTCTCCGCCTTCTGG
CATGGTTTTTACCCGGGGTAGGGACGGAGAGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
ATGAGGGGAGGGAGAAGGCGGGGCTAAGAGGCTCACTCTGTCTAGGGTGA
TACGAAAATCCTTCATCCACCCACTTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTGTAGCTACTATCTCTTCTTCTTCTC
CATCGCGCTCGTGCAGACCGTGCAGCGGGCGTGGCAGAAGAAGGTGTCCC
CTTACTTCACCTCCTCCATCCCCACCCTCTATCACCTGCTCTGCATCGTC
GTCTTCTCCGCCTACATCAATTACTTCTCGATCGTCTTCCAGGTGGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAAGGTAG
CCTGGCCTTTTTTACTGGTAGTTTACTTCCTCTTCTTTGCCCATCCAGAA
GGCTCATTTCCCCGCCAATCCCACCCTCCCTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCAGGTCCTGGCCTGGGACCGAGCGATGGCCGTGTGGA
AGAGCTCGCACTACTGGGGTCACCTCGCGACCGCGGCTGCCTTTGCACTC
ACGTCCGTGCTGCCCTCTCCAAAGAAGGAGGCGGGGAAGAAGGCGTAGAG
GGAGAGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAG back to topCoding sequence (CDS) from alignment at chr8:1212691..1216679- >NO08G04210.1 ID=NO08G04210.1|Name=NO08G04210.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr8:1212691..1216679- (Nannochloropsis oceanica) ATGACTCCTTCTCCTCTCCCCCCCCAAAAAGGAGCCATGACGTTCCACGA GAAGCACCTCGATGCCTTGGTGTCCTTCTTCGGAAGCTGGGTGCCATTAG CGGATAAGACGGTCTACCTGACTGTGCCTGGTATGGACGAGGCACTGGCA CCCTTGGGGGCGACCCTGGGCTTCGAGATCGGCATGCTCAAGTATGTACT GGCCATGTTCCTTGCCTACCCGCTGTCAGGCATCCTTAATATCTTACCAT CGGCCAACGCTAAGCATGCCTTCTCCTTGGTGGTGGGCTTGTGGTACGCG CAGGAGATTTTTGGCAACCAGTGGGTGCATTCGTTCCTCTCCTCGGCTGT GTCGTACCTCATAGTCTGTTTCGGCCCCCGGAAGCATATCGCTACGCTTG TCTTCCTCTTCACCATGACGTACATGAGTGTCAGCCACCTGTACCGCCTC TACGTAGACTACTTGGGCTGGTCGCTGGACTTCACTGGTCCACAGATGAT CTTGACCATCAAGCTTTCCTCGTTTGCCTACAACGTTTATGACGGCGTGG TGGACCTCGACACCATCTCCAAGCCCCAGGAGAACAAGCTCAAGATCCGG GTATTTAAGGAGCGGCTCCGCTACGCCATCACCTCCATCCCCTCCCCCTT GGCCTTTTTCGGCTACGTCTACTCCTTCTCCACCTTTTTGGCAGGCCCGG CATTCGAGTACTCAGACTACGTCTCAGTCATCGACGGCTCGGCCTTTGCC AAGAAGGGAGGGAAGAAGGGAGGGAAGGAGGGTGGGGCGCCCTCCTCGTT GCTGGCTGCGTTGTGGCGTCTGCTACAGGGCGTCCTGTGCCTGGCCCTCC ACCTCGTCGGCTCGGCCAAGTTCAGCCTCGGCAATGTCCTCTCCAAGGAA GTCCTGGCCATGCCCTTCTTCGAGCGCTGGCTCTTCACTCTCATCGCCCT CTTCTTCTGCCGAATGAAGTACTACTTCGCTTGGAAGGTGGCGGAAGGAT CGTGTGTCGTGGCCGGCTTCGGTTTTGAAGGCTACACTGAGGATGGATCG GTGAAGGGGTGGAACGGTATTTCTAATATGGACATATTAGGCTTCGAGAC CGCCACTAATACCGCCGAGGCCTCCAAGGCCTGGAACAAAGGCACCCAAA AATGGCTGCAGCGATACGTCTATTTCCGCAACAGCGAGTCGCTCCTCATC ACCTACTTCGTCTCCGCCTTCTGGCATGGTTTTTACCCGGGCTACTATCT CTTCTTCTTCTCCATCGCGCTCGTGCAGACCGTGCAGCGGGCGTGGCAGA AGAAGGTGTCCCCTTACTTCACCTCCTCCATCCCCACCCTCTATCACCTG CTCTGCATCGTCGTCTTCTCCGCCTACATCAATTACTTCTCGATCGTCTT CCAGGTCCTGGCCTGGGACCGAGCGATGGCCGTGTGGAAGAGCTCGCACT ACTGGGGTCACCTCGCGACCGCGGCTGCCTTTGCACTCACGTCCGTGCTG CCCTCTCCAAAGAAGGAGGCGGGGAAGAAGGCGTAG back to top
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