NO08G04100.1, NO08G04100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04100.1
Unique NameNO08G04100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length740
Alignment locationchr8:1167399..1168405 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1167399..1168405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04100.1 vs.
Match: EWM26878.1 (hypothetical protein Naga_100576g3 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 1.600e-18
Identity = 80/131 (61.07%), Postives = 87/131 (66.41%), Query Frame = 0 
Query:   53 MVLFGGRGSGARNAGVASTPAAPAPS-TLSDRFNRLHVKIAPAFTGGAARDSRRIQTQTSQQQKRIAAQAAFRGQTVQIVLPKQQQSQQHRQQQHQQRGRRIVGR--GGGRGV-GLAGRGSAGRGG-RGEG 179
            MVLFGGRG GA    V+     PAPS TLSDRF+RLHVK   AFTGG  RD RR Q Q +QQQKR AAQAAFRGQTVQ+VLPKQQ          Q+ G R+ GR  GG RGV G+A R   GRGG RG G
Sbjct:   44 MVLFGGRGGGAGRGAVSG----PAPSSTLSDRFDRLHVKSTAAFTGGG-RDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQL---------QRGGIRVGGRGVGGSRGVAGVASRAGGGRGGVRGRG 160
The following BLAST results are available for this feature:
BLAST of NO08G04100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26878.11.600e-1861.07hypothetical protein Naga_100576g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04100NO08G04100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04100.1NO08G04100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04100.1.cds1NO08G04100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04100.1.cds2NO08G04100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04100.1 ID=NO08G04100.1|Name=NO08G04100.1|organism=Nannochloropsis oceanica|type=mRNA|length=740bp
TTGGCTTTCGCGCCATAACTTGTGACAGAGGCGCATGGTCCCCCTCCTTT
CTTCCCTGCCTTGTGTCCGTGGTCTACCGTAAACTTCGATGCCACCCTTA
TGCGCCGCATACCACCACTGTCACAAAGGCTATGAGATTTCTGTCTTATG
GTCAGGTGGTTGCCATTACAATAGTGTGGCGCGCGTCGTCGACCTCCTCT
CTCATCCTTCCCTCCAACCCTACTCAGCCCTTTCTTTGTTCGACACCCAC
AGTAAATCGTCCCCGCCTTCACTCCGCGCACAGCAATATGGTCCTCTTTG
GTGGCCGCGGTAGTGGGGCTCGTAACGCGGGCGTCGCTAGTACCCCTGCT
GCCCCAGCTCCCAGCACTCTCTCCGATCGTTTTAATCGCCTGCACGTCAA
GATCGCACCAGCCTTCACGGGCGGTGCAGCGCGTGACAGCCGCCGCATCC
AGACGCAGACCTCCCAGCAACAGAAGCGAATTGCGGCCCAAGCGGCTTTT
CGGGGACAGACCGTGCAGATCGTCCTCCCCAAGCAGCAGCAATCCCAGCA
ACACCGACAGCAGCAGCATCAGCAGCGAGGTAGGCGTATTGTGGGACGTG
GAGGGGGACGAGGAGTGGGTCTGGCTGGCCGTGGGAGTGCTGGCCGGGGT
GGACGGGGGGAGGGCGCGGCGGCGTTGGTGGGCGGGGCACCCGTGGTGGA
CGAGGAGGGGGTCGTGGCCGTGGGGGGGGAGGGGCTGTGA
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protein sequence of NO08G04100.1

>NO08G04100.1-protein ID=NO08G04100.1-protein|Name=NO08G04100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MRFLSYGQVVAITIVWRASSTSSLILPSNPTQPFLCSTPTVNRPRLHSAH
SNMVLFGGRGSGARNAGVASTPAAPAPSTLSDRFNRLHVKIAPAFTGGAA
RDSRRIQTQTSQQQKRIAAQAAFRGQTVQIVLPKQQQSQQHRQQQHQQRG
RRIVGRGGGRGVGLAGRGSAGRGGRGEGAAALVGGAPVVDEEGVVAVGGE
GL*
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mRNA from alignment at chr8:1167399..1168405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04100.1 ID=NO08G04100.1|Name=NO08G04100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp|location=Sequence derived from alignment at chr8:1167399..1168405- (Nannochloropsis oceanica)
TTGGCTTTCGCGCCATAACTTGTGACAGAGGCGCATGGTCCCCCTCCTTT
CTTCCCTGCCTTGTGTCCGTGGTCTACCGTAAACTTCGATGCCACCCTTA
TGCGCCGCATACCACCACTGTCACAAAGGCTATGAGATTTCTGTCTTATG
GTCAGGTGGTTGCCATTACAATAGTGTGGCGCGCGTCGTCGACCTCCTCT
CTCATCCTTCCCTCCAACCCTACTCAGCCCTTTCTTTGTTCGACACCCAC
AGTAAATCGTCCCCGCCTTCACTCCGCGCACAGCAATATGGTCCTCTTTG
GTGGCCGCGGTAGTGGGGCTCGTAACGCGGGCGTCGCTAGTACCCCTGCT
GCCCCAGCTCCCAGGTACGTGCAGCCCCCTCTCTCCTTCCTCCTTGTTCC
TTCCCGCCCTCCCTTTTCTATCACGAGCTCTAGGGAGCACAGCATTCTGG
CTGCACATGGTACCAACGAGTAAGATGCAAACACGTGTTTTACGGGACCT
TTCGTAGAGTTCATGACACTCCTTTGGAAATAAGACCAAGTGAAGGGCGT
CATCATGATCACCATCTGCACCATCAGCAGCAGCGGCCGCTGCACTGCAC
TAAGCCCCCTCCTCCCTACCCCGCACAGCAGCACTCTCTCCGATCGTTTT
AATCGCCTGCACGTCAAGATCGCACCAGCCTTCACGGGCGGTGCAGCGCG
TGACAGCCGCCGCATCCAGACGCAGACCTCCCAGCAACAGAAGCGAATTG
CGGCCCAAGCGGCTTTTCGGGGACAGACCGTGCAGATCGTCCTCCCCAAG
CAGCAGCAATCCCAGCAACACCGACAGCAGCAGCATCAGCAGCGAGGTAG
GCGTATTGTGGGACGTGGAGGGGGACGAGGAGTGGGTCTGGCTGGCCGTG
GGAGTGCTGGCCGGGGTGGACGGGGGGAGGGCGCGGCGGCGTTGGTGGGC
GGGGCACCCGTGGTGGACGAGGAGGGGGTCGTGGCCGTGGGGGGGGAGGG
GCTGTGA
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Coding sequence (CDS) from alignment at chr8:1167399..1168405-

>NO08G04100.1 ID=NO08G04100.1|Name=NO08G04100.1|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at chr8:1167399..1168405- (Nannochloropsis oceanica)
ATGAGATTTCTGTCTTATGGTCAGGTGGTTGCCATTACAATAGTGTGGCG
CGCGTCGTCGACCTCCTCTCTCATCCTTCCCTCCAACCCTACTCAGCCCT
TTCTTTGTTCGACACCCACAGTAAATCGTCCCCGCCTTCACTCCGCGCAC
AGCAATATGGTCCTCTTTGGTGGCCGCGGTAGTGGGGCTCGTAACGCGGG
CGTCGCTAGTACCCCTGCTGCCCCAGCTCCCAGCACTCTCTCCGATCGTT
TTAATCGCCTGCACGTCAAGATCGCACCAGCCTTCACGGGCGGTGCAGCG
CGTGACAGCCGCCGCATCCAGACGCAGACCTCCCAGCAACAGAAGCGAAT
TGCGGCCCAAGCGGCTTTTCGGGGACAGACCGTGCAGATCGTCCTCCCCA
AGCAGCAGCAATCCCAGCAACACCGACAGCAGCAGCATCAGCAGCGAGGT
AGGCGTATTGTGGGACGTGGAGGGGGACGAGGAGTGGGTCTGGCTGGCCG
TGGGAGTGCTGGCCGGGGTGGACGGGGGGAGGGCGCGGCGGCGTTGGTGG
GCGGGGCACCCGTGGTGGACGAGGAGGGGGTCGTGGCCGTGGGGGGGGAG
GGGCTGTGA
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Synonyms
Publications