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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1089121..1091860 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03860.1 vs.
Match: EWM26868.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 731.5 bits (1887), Expect = 2.500e-207 Identity = 431/719 (59.94%), Postives = 523/719 (72.74%), Query Frame = 0
Query: 1 MQRLVALRQAVGAGTLG-VVRNNMPSSLSSLASGNISSEDVVASS---SSNSNTPTCKGVPSTPSPPTT--ATPPSTLHDIMKQSSSISSSSSAEDQEALLRQAGKELGRAWKQEGGVKPGIARFERILLGEDLEAMERCWRE-MRKEGLDFWHMQKFLGLLLEDRHLDVRGDGGSSLSKHHQRHHQQGRTTKASSGELPKQRLRLAWSIFDHMTAVEKAAANKGPRKDGAAKAAQNSAKAALNSD-DATASAPAASGALRTIASHHWGRVYSCLLKACAAVGDGSRAKELSDHMESAGILPGEEALSNLVMALAKTRIRHEAQEHFERARRRGLTLSSAAKSCLISCHARALDGAAAAHVLSAAIQEATLNDNPGQVSGNMVKKVLEVGIETGDVDVLRQGLTALSVPVDRGMALQILNVAARKGDGKLAMDMFYASEGWGYAPTASAFNAVVQALGLSKNDVAMLKALNEMCAWGFSPSSGTLHLLARQLSQSVTRLDEAYNNLVAMRRANEEYVRAQEQQMQAEAKAGGEANSGGKRGEGATAPFA-NAPLPVSASAVYLIVLGCAYGNQLDRAFATFEDYGPVFGLVHDTAVCNALLLACLRSRSLQVGAATSVMTEMDRLGVAPDDETCHLMVRILVQAKEADAKRVEQVLSFMDQKGVVPRASTQRLLILWHALLGEHDRAQELLSGLQAQGGYMPSYIEERLRQIRENGDRL 711
MQR +ALR+ G L V+ + LSS+ SGNIS +D A + +++ TP + + ++PSP T A+PP Q+ SI+ SSS+E+QE L +QA ELG+AWKQ GVKPG+ARFER+L GEDL+AMERCWR+ + KE L+FWH+ FLGLLL+DR L+ R G+ ++ + G+ T GE ++RLRLA S+F M ++K A + A N+A A ++SD D T HW RVY+ +L+ACA + DG A E+ DHM+ G GEE +S +VMALAK R+R EAQ FE A +GL LS AAKSCLISCHARALDG AAA VL +++ +NPG VSGNMV KVLEVGIETG+V VLRQGL AL++PVDRGM LQILN+AA++GDG+LAMD+FYA EGWG++PTAS FNAV+QALG+SKNDVAMLKALNEMCA GF+PS GTLHL+ARQLS+SV RLDEAYNNLVA+++A +++VR QE + + E +A GK GEGA F NAPLPVS SAVYLIVLGCAY NQLDRAFATFEDY PVFGL +DT NALLLACLRSRSLQVGAA SVM EMDRLG+AP+DETCHLMVRIL QAKE D KR+E VLS MD+KGVV R +TQRLLILW+ALLGEHDRAQELLSG+ AQG Y+PSY EERL+QIR NGDRL
Sbjct: 1 MQRFIALRKLAAGGFLTPVLSPHHGRYLSSIFSGNISPDDSAAPTLGQNTSRGTPMQEELRASPSPSPTVAASPPLP----SAQTISINPSSSSEEQEKLFQQAALELGQAWKQAAGVKPGMARFERLLQGEDLDAMERCWRQTVGKERLNFWHVHTFLGLLLDDRFLNARPQSGAVPAEF-----EGGQKTGGKRGETLRRRLRLASSLFKDM-VMQKIARERKAGGSPLEGGALNAAGATVSSDPDPT--------------PQHWQRVYNLMLRACANIADGVCALEVWDHMQETGFSAGEETMSFVVMALAKARMRLEAQARFEEAVEKGLVLSPAAKSCLISCHARALDGEAAARVLEVTVEDGRSPENPGVVSGNMVTKVLEVGIETGNVKVLRQGLNALTMPVDRGMGLQILNMAAKRGDGQLAMDVFYALEGWGFSPTASVFNAVIQALGISKNDVAMLKALNEMCALGFTPSEGTLHLVARQLSKSVARLDEAYNNLVALQKAYQDHVR-QEAEGRQEQQA-----VDGKDGEGADPAFVPNAPLPVSGSAVYLIVLGCAYANQLDRAFATFEDYQPVFGLAYDTNASNALLLACLRSRSLQVGAAISVMNEMDRLGIAPNDETCHLMVRILAQAKEVDVKRMESVLSHMDEKGVVLRPATQRLLILWYALLGEHDRAQELLSGMHAQGCYVPSYFEERLKQIRLNGDRL 689
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03860.1 ID=NO08G03860.1|Name=NO08G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2637bp CGGCCATGGTTCCTGCAGTCGTCTAGACGGAGAGATGTGTAACATGTGTA GCTCAAAGTTAGATGGAGATTAGTTCCAATAGTTCTTTGCTTTCGCGGCA TAAACTTCGACACCGGGAATTACATCAAGCGTGTGCCGATGCCGATGTGA GGCTTAGTACATCTTCACCTCATGCATCTGCTCCGCCCTTCGCATTCCTA TCCATAACACGTTCTGATGGGTGCTTGGAAGGAGTAGGGGTGGTGATGGG CTTTCCCAGGCTTCTGGGCCGCCTGTAGTATCTCAATCGGAAGGGATCCA CCACAATGGCCCGCCTGCCCCACCACTTACCCCTCTGCAACACTGCAAAT TCTAACCTGCTCCCATACATACAAAATACAGCACAAGCCAGAGATGCAGC GTTTGGTAGCCTTGCGGCAGGCAGTGGGCGCCGGAACTCTTGGCGTCGTT CGCAACAACATGCCAAGCTCCCTGTCCTCCTTGGCAAGCGGTAACATTTC GTCTGAAGATGTGGTCGCTTCGAGCAGCAGCAACAGCAACACACCCACTT GCAAGGGCGTGCCTTCGACTCCTTCCCCCCCTACCACTGCCACCCCTCCT TCCACCCTCCACGACATTATGAAGCAATCTTCTTCCATCTCCTCTAGCAG CAGCGCCGAAGACCAAGAAGCCCTTCTTCGACAAGCAGGAAAGGAACTTG GACGGGCCTGGAAGCAGGAAGGAGGGGTCAAGCCAGGGATTGCAAGGTTC GAGCGGATTTTGCTAGGGGAAGATTTGGAGGCGATGGAGCGGTGCTGGAG GGAGATGCGGAAGGAAGGATTGGATTTTTGGCACATGCAGAAATTTTTGG GGCTGCTATTGGAAGACCGGCATTTGGACGTGCGTGGTGATGGGGGTTCG TCGTTGTCGAAGCATCATCAACGCCACCACCAGCAGGGAAGGACTACGAA GGCCAGCAGTGGGGAGCTCCCCAAGCAGCGACTGCGGCTCGCCTGGTCCA TTTTCGACCACATGACAGCAGTTGAAAAGGCGGCTGCAAATAAAGGACCG CGGAAGGACGGTGCGGCAAAGGCAGCTCAAAACAGCGCAAAGGCAGCTCT GAACAGCGACGATGCAACAGCATCAGCACCAGCAGCATCGGGGGCCTTGC GTACGATCGCATCCCACCACTGGGGCCGGGTCTACAGTTGCCTCCTCAAG GCTTGTGCCGCCGTCGGGGATGGATCACGGGCCAAGGAGTTGTCAGACCA CATGGAGTCAGCGGGAATCCTTCCTGGGGAAGAGGCGTTGAGCAACCTAG TCATGGCTCTGGCCAAGACCCGGATCCGCCACGAAGCACAAGAGCATTTT GAGCGCGCTCGCCGTCGAGGGCTTACCCTTTCCTCGGCAGCCAAGAGCTG CCTTATTTCTTGTCATGCCCGTGCATTGGACGGCGCGGCGGCTGCGCATG TCCTGAGTGCCGCGATCCAGGAAGCGACCTTGAATGATAACCCAGGGCAG GTATCGGGGAACATGGTGAAGAAGGTGTTGGAAGTAGGAATTGAAACAGG CGATGTCGATGTTTTGCGGCAGGGATTAACGGCACTGTCTGTGCCGGTGG ATCGTGGGATGGCACTTCAGATCTTAAATGTTGCGGCAAGGAAGGGCGAT GGGAAGTTGGCGATGGACATGTTCTATGCGTCTGAAGGGTGGGGCTACGC ACCTACAGCGTCGGCGTTTAATGCCGTGGTGCAAGCCCTGGGCCTCTCGA AGAATGACGTGGCAATGCTCAAGGCATTAAATGAAATGTGTGCTTGGGGG TTTTCGCCGTCGTCGGGAACCCTGCATTTGTTGGCGCGACAGCTGTCTCA ATCTGTCACCAGGCTGGACGAGGCCTACAACAATTTGGTGGCCATGCGGA GAGCGAACGAGGAGTATGTGCGAGCGCAGGAGCAACAGATGCAAGCGGAA GCAAAGGCGGGTGGGGAGGCTAATAGTGGTGGAAAAAGGGGCGAGGGGGC GACGGCTCCGTTTGCGAATGCTCCCTTGCCCGTGAGCGCCTCTGCCGTCT ACCTTATTGTGTTGGGGTGTGCGTACGGTAATCAGCTCGATCGTGCGTTT GCGACCTTTGAAGATTACGGCCCTGTTTTTGGACTGGTGCATGACACGGC CGTGTGCAACGCTTTGTTATTAGCCTGTCTCCGCTCGCGCTCGCTGCAGG TAGGGGCGGCCACATCGGTCATGACGGAGATGGATCGCCTCGGCGTCGCG CCGGACGACGAAACTTGCCACTTGATGGTTCGCATCCTTGTACAGGCCAA GGAAGCGGACGCTAAGAGAGTGGAGCAAGTTCTGTCATTCATGGACCAAA AGGGTGTGGTGCCCCGGGCGAGCACCCAGCGGCTTCTTATTTTGTGGCAC GCACTGTTAGGGGAACATGACCGGGCGCAAGAGCTACTGAGTGGATTGCA AGCACAGGGTGGGTATATGCCATCGTATATTGAAGAGAGATTGCGGCAGA TTCGGGAGAATGGGGATCGGTTGTGAGGTGAGAGGGATGACATGTATGCT TGCCTAAGGAATGCGGGTAGGGATTGGAAAGAACACGATAGTATTAAAAT AGAAAAAGAAAAATGTTTTTCAGACATTGAAGTGAGG back to topprotein sequence of NO08G03860.1 >NO08G03860.1-protein ID=NO08G03860.1-protein|Name=NO08G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp MQRLVALRQAVGAGTLGVVRNNMPSSLSSLASGNISSEDVVASSSSNSNT PTCKGVPSTPSPPTTATPPSTLHDIMKQSSSISSSSSAEDQEALLRQAGK ELGRAWKQEGGVKPGIARFERILLGEDLEAMERCWREMRKEGLDFWHMQK FLGLLLEDRHLDVRGDGGSSLSKHHQRHHQQGRTTKASSGELPKQRLRLA WSIFDHMTAVEKAAANKGPRKDGAAKAAQNSAKAALNSDDATASAPAASG ALRTIASHHWGRVYSCLLKACAAVGDGSRAKELSDHMESAGILPGEEALS NLVMALAKTRIRHEAQEHFERARRRGLTLSSAAKSCLISCHARALDGAAA AHVLSAAIQEATLNDNPGQVSGNMVKKVLEVGIETGDVDVLRQGLTALSV PVDRGMALQILNVAARKGDGKLAMDMFYASEGWGYAPTASAFNAVVQALG LSKNDVAMLKALNEMCAWGFSPSSGTLHLLARQLSQSVTRLDEAYNNLVA MRRANEEYVRAQEQQMQAEAKAGGEANSGGKRGEGATAPFANAPLPVSAS AVYLIVLGCAYGNQLDRAFATFEDYGPVFGLVHDTAVCNALLLACLRSRS LQVGAATSVMTEMDRLGVAPDDETCHLMVRILVQAKEADAKRVEQVLSFM DQKGVVPRASTQRLLILWHALLGEHDRAQELLSGLQAQGGYMPSYIEERL RQIRENGDRL* back to topmRNA from alignment at chr8:1089121..1091860+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03860.1 ID=NO08G03860.1|Name=NO08G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2740bp|location=Sequence derived from alignment at chr8:1089121..1091860+ (Nannochloropsis oceanica) CGGCCATGGTTCCTGCAGTCGTCTAGACGGAGAGATGTGTAACATGTGTA
GCTCAAAGTTAGATGGAGATTAGTTCCAATAGTTCTTTGCTTTCGCGGCA
TAAACTTCGACACCGGGAATTACATCAAGCGTGTGCCGATGCCGATGTGA
GGCTTAGTACATCTTCACCTCATGCATCTGCTCCGCCCTTCGCATTCCTA
TCCATAACACGTTCTGATGGGTGCTTGGAAGGAGTAGGGGTGGTGATGGG
CTTTCCCAGGCTTCTGGGCCGCCTGTAGTATCTCAATCGGAAGGGATCCA
CCACAATGGCCCGCCTGCCCCACCACTTACCCCTCTGCAACACTGCAAAT
TCTAACCTGCTCCCATACATACAAAATACAGCACAAGCCAGAGATGCAGC
GTTTGGTAGCCTTGCGGCAGGCAGTGGGCGCCGGAACTCTTGGCGTCGTT
CGCAACAACATGCCAAGGTATGATGAATATGCGGCGTCCGTCATCGTTGC
CCTCCGTTCTCCATGTTGTTCCTCTCACCGCGCACTACCCCACATCCCAC
AATCTCACTATCCACTACAGCTCCCTGTCCTCCTTGGCAAGCGGTAACAT
TTCGTCTGAAGATGTGGTCGCTTCGAGCAGCAGCAACAGCAACACACCCA
CTTGCAAGGGCGTGCCTTCGACTCCTTCCCCCCCTACCACTGCCACCCCT
CCTTCCACCCTCCACGACATTATGAAGCAATCTTCTTCCATCTCCTCTAG
CAGCAGCGCCGAAGACCAAGAAGCCCTTCTTCGACAAGCAGGAAAGGAAC
TTGGACGGGCCTGGAAGCAGGAAGGAGGGGTCAAGCCAGGGATTGCAAGG
TTCGAGCGGATTTTGCTAGGGGAAGATTTGGAGGCGATGGAGCGGTGCTG
GAGGGAGATGCGGAAGGAAGGATTGGATTTTTGGCACATGCAGAAATTTT
TGGGGCTGCTATTGGAAGACCGGCATTTGGACGTGCGTGGTGATGGGGGT
TCGTCGTTGTCGAAGCATCATCAACGCCACCACCAGCAGGGAAGGACTAC
GAAGGCCAGCAGTGGGGAGCTCCCCAAGCAGCGACTGCGGCTCGCCTGGT
CCATTTTCGACCACATGACAGCAGTTGAAAAGGCGGCTGCAAATAAAGGA
CCGCGGAAGGACGGTGCGGCAAAGGCAGCTCAAAACAGCGCAAAGGCAGC
TCTGAACAGCGACGATGCAACAGCATCAGCACCAGCAGCATCGGGGGCCT
TGCGTACGATCGCATCCCACCACTGGGGCCGGGTCTACAGTTGCCTCCTC
AAGGCTTGTGCCGCCGTCGGGGATGGATCACGGGCCAAGGAGTTGTCAGA
CCACATGGAGTCAGCGGGAATCCTTCCTGGGGAAGAGGCGTTGAGCAACC
TAGTCATGGCTCTGGCCAAGACCCGGATCCGCCACGAAGCACAAGAGCAT
TTTGAGCGCGCTCGCCGTCGAGGGCTTACCCTTTCCTCGGCAGCCAAGAG
CTGCCTTATTTCTTGTCATGCCCGTGCATTGGACGGCGCGGCGGCTGCGC
ATGTCCTGAGTGCCGCGATCCAGGAAGCGACCTTGAATGATAACCCAGGG
CAGGTATCGGGGAACATGGTGAAGAAGGTGTTGGAAGTAGGAATTGAAAC
AGGCGATGTCGATGTTTTGCGGCAGGGATTAACGGCACTGTCTGTGCCGG
TGGATCGTGGGATGGCACTTCAGATCTTAAATGTTGCGGCAAGGAAGGGC
GATGGGAAGTTGGCGATGGACATGTTCTATGCGTCTGAAGGGTGGGGCTA
CGCACCTACAGCGTCGGCGTTTAATGCCGTGGTGCAAGCCCTGGGCCTCT
CGAAGAATGACGTGGCAATGCTCAAGGCATTAAATGAAATGTGTGCTTGG
GGGTTTTCGCCGTCGTCGGGAACCCTGCATTTGTTGGCGCGACAGCTGTC
TCAATCTGTCACCAGGCTGGACGAGGCCTACAACAATTTGGTGGCCATGC
GGAGAGCGAACGAGGAGTATGTGCGAGCGCAGGAGCAACAGATGCAAGCG
GAAGCAAAGGCGGGTGGGGAGGCTAATAGTGGTGGAAAAAGGGGCGAGGG
GGCGACGGCTCCGTTTGCGAATGCTCCCTTGCCCGTGAGCGCCTCTGCCG
TCTACCTTATTGTGTTGGGGTGTGCGTACGGTAATCAGCTCGATCGTGCG
TTTGCGACCTTTGAAGATTACGGCCCTGTTTTTGGACTGGTGCATGACAC
GGCCGTGTGCAACGCTTTGTTATTAGCCTGTCTCCGCTCGCGCTCGCTGC
AGGTAGGGGCGGCCACATCGGTCATGACGGAGATGGATCGCCTCGGCGTC
GCGCCGGACGACGAAACTTGCCACTTGATGGTTCGCATCCTTGTACAGGC
CAAGGAAGCGGACGCTAAGAGAGTGGAGCAAGTTCTGTCATTCATGGACC
AAAAGGGTGTGGTGCCCCGGGCGAGCACCCAGCGGCTTCTTATTTTGTGG
CACGCACTGTTAGGGGAACATGACCGGGCGCAAGAGCTACTGAGTGGATT
GCAAGCACAGGGTGGGTATATGCCATCGTATATTGAAGAGAGATTGCGGC
AGATTCGGGAGAATGGGGATCGGTTGTGAGGTGAGAGGGATGACATGTAT
GCTTGCCTAAGGAATGCGGGTAGGGATTGGAAAGAACACGATAGTATTAA
AATAGAAAAAGAAAAATGTTTTTCAGACATTGAAGTGAGG back to topCoding sequence (CDS) from alignment at chr8:1089121..1091860+ >NO08G03860.1 ID=NO08G03860.1|Name=NO08G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at chr8:1089121..1091860+ (Nannochloropsis oceanica) ATGCAGCGTTTGGTAGCCTTGCGGCAGGCAGTGGGCGCCGGAACTCTTGG CGTCGTTCGCAACAACATGCCAAGCTCCCTGTCCTCCTTGGCAAGCGGTA ACATTTCGTCTGAAGATGTGGTCGCTTCGAGCAGCAGCAACAGCAACACA CCCACTTGCAAGGGCGTGCCTTCGACTCCTTCCCCCCCTACCACTGCCAC CCCTCCTTCCACCCTCCACGACATTATGAAGCAATCTTCTTCCATCTCCT CTAGCAGCAGCGCCGAAGACCAAGAAGCCCTTCTTCGACAAGCAGGAAAG GAACTTGGACGGGCCTGGAAGCAGGAAGGAGGGGTCAAGCCAGGGATTGC AAGGTTCGAGCGGATTTTGCTAGGGGAAGATTTGGAGGCGATGGAGCGGT GCTGGAGGGAGATGCGGAAGGAAGGATTGGATTTTTGGCACATGCAGAAA TTTTTGGGGCTGCTATTGGAAGACCGGCATTTGGACGTGCGTGGTGATGG GGGTTCGTCGTTGTCGAAGCATCATCAACGCCACCACCAGCAGGGAAGGA CTACGAAGGCCAGCAGTGGGGAGCTCCCCAAGCAGCGACTGCGGCTCGCC TGGTCCATTTTCGACCACATGACAGCAGTTGAAAAGGCGGCTGCAAATAA AGGACCGCGGAAGGACGGTGCGGCAAAGGCAGCTCAAAACAGCGCAAAGG CAGCTCTGAACAGCGACGATGCAACAGCATCAGCACCAGCAGCATCGGGG GCCTTGCGTACGATCGCATCCCACCACTGGGGCCGGGTCTACAGTTGCCT CCTCAAGGCTTGTGCCGCCGTCGGGGATGGATCACGGGCCAAGGAGTTGT CAGACCACATGGAGTCAGCGGGAATCCTTCCTGGGGAAGAGGCGTTGAGC AACCTAGTCATGGCTCTGGCCAAGACCCGGATCCGCCACGAAGCACAAGA GCATTTTGAGCGCGCTCGCCGTCGAGGGCTTACCCTTTCCTCGGCAGCCA AGAGCTGCCTTATTTCTTGTCATGCCCGTGCATTGGACGGCGCGGCGGCT GCGCATGTCCTGAGTGCCGCGATCCAGGAAGCGACCTTGAATGATAACCC AGGGCAGGTATCGGGGAACATGGTGAAGAAGGTGTTGGAAGTAGGAATTG AAACAGGCGATGTCGATGTTTTGCGGCAGGGATTAACGGCACTGTCTGTG CCGGTGGATCGTGGGATGGCACTTCAGATCTTAAATGTTGCGGCAAGGAA GGGCGATGGGAAGTTGGCGATGGACATGTTCTATGCGTCTGAAGGGTGGG GCTACGCACCTACAGCGTCGGCGTTTAATGCCGTGGTGCAAGCCCTGGGC CTCTCGAAGAATGACGTGGCAATGCTCAAGGCATTAAATGAAATGTGTGC TTGGGGGTTTTCGCCGTCGTCGGGAACCCTGCATTTGTTGGCGCGACAGC TGTCTCAATCTGTCACCAGGCTGGACGAGGCCTACAACAATTTGGTGGCC ATGCGGAGAGCGAACGAGGAGTATGTGCGAGCGCAGGAGCAACAGATGCA AGCGGAAGCAAAGGCGGGTGGGGAGGCTAATAGTGGTGGAAAAAGGGGCG AGGGGGCGACGGCTCCGTTTGCGAATGCTCCCTTGCCCGTGAGCGCCTCT GCCGTCTACCTTATTGTGTTGGGGTGTGCGTACGGTAATCAGCTCGATCG TGCGTTTGCGACCTTTGAAGATTACGGCCCTGTTTTTGGACTGGTGCATG ACACGGCCGTGTGCAACGCTTTGTTATTAGCCTGTCTCCGCTCGCGCTCG CTGCAGGTAGGGGCGGCCACATCGGTCATGACGGAGATGGATCGCCTCGG CGTCGCGCCGGACGACGAAACTTGCCACTTGATGGTTCGCATCCTTGTAC AGGCCAAGGAAGCGGACGCTAAGAGAGTGGAGCAAGTTCTGTCATTCATG GACCAAAAGGGTGTGGTGCCCCGGGCGAGCACCCAGCGGCTTCTTATTTT GTGGCACGCACTGTTAGGGGAACATGACCGGGCGCAAGAGCTACTGAGTG GATTGCAAGCACAGGGTGGGTATATGCCATCGTATATTGAAGAGAGATTG CGGCAGATTCGGGAGAATGGGGATCGGTTGTGA back to top
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