|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1053604..1055669 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03740.1 vs.
Match: XP_005854004.1 (hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526]; EKU22359.1 hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 268.9 bits (686), Expect = 3.900e-68 Identity = 175/375 (46.67%), Postives = 215/375 (57.33%), Query Frame = 0
Query: 72 PPAAVDLTQALKDAQRETIVVNGREFAGDPQGLQEEMHRLVNPLVVDVETATLLCQDILRASSRTASGGDSYVVASSLLVRRGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGEGGKEG--------------------------------------------GVGMQAQIQAQSWQYYLDGGGRGGRRGEGTLKKAVGLLNGFLSGQQQQQQQQQQKHGHQI-MGEEGEASSTSRSSSSCNRSPRGGEGGEEEGLECKKDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFLVLGAGEGGVNGLFVLRGFHGRSPWYGKEGEEGEEGREGGRGGGRPSVAVVKDE 402
PPAAVD+ QA KDAQRET+V+NGR F+GDP GLQ EMHRLV PLVVD ETATLLCQDILRASSRTASGGDSYV+ +SLLVR GNLLTPA A SS+PI+I+I G V I A N Y+LHWDM + G GKEG G G Q + + Y G+G G GT ++ G + +++Q +K G Q +GE+GE G GG +G E ++ E E GE+++L TLLEVRLDVL+R+ R+++VW +E E+ P SFLVLGAGEG VNG + L GF GR+PWY KE EE EE G R V +V+DE
Sbjct: 1 PPAAVDVLQAWKDAQRETVVLNGRSFSGDPSGLQSEMHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRR---YFQDRGKGPGEGVGTREECTGTEDA--GKEKEQTGVGSKKEGDQDRLGEKGEGRGE-------------GGGGRVKGEE--EEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLVLGAGEGKVNGTYFLHGFQGRAPWYMKEEEEEEE-----EEGERARVVLVRDE 350
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03740.1 ID=NO08G03740.1|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp ATGGACTACTCTGGGATGACTGACCCCCTTCCTCCTTCCAGCGACAGCAG CAGCAGCAACAGTAACGGGGGAGGAGAGAACTTCCTCCTTCGTTGCCTCG ACGGACAAGTCAAGCTTGCGCTACAAGCCCAGGTTGCCATTGCGAAGAAT ATCGACAGCTTCCTCACCCTGCTTCATCTTTTCCATTCCTCTCTCATCGC CATCCCCCTCCCTCCCCCAGCGGCGGTCGACTTGACCCAGGCGTTGAAAG ATGCGCAAAGGGAGACGATTGTGGTTAATGGGAGGGAATTTGCGGGCGAC CCGCAGGGGTTACAGGAAGAAATGCATCGACTGGTAAACCCCCTGGTAGT GGACGTGGAAACTGCCACCCTCCTTTGTCAGGACATCCTGAGAGCCTCCT CTCGAACGGCGTCGGGAGGCGATTCGTACGTCGTTGCCTCCTCCCTTCTA GTCCGTCGTGGTAACCTGCTCACCCCTGCCGCCGCTGAATCCTCCCTCCC CATCACAATAAACATCGACCCGGTAGTAGGCTCGGTTCATATCATCGCGG AAAATAGGTACATCTTGCACTGGGATATGTTCGGGGAGGACAAGGGCGAG GGTGGGAAGGAGGGAGGGGTGGGGATGCAGGCACAGATCCAGGCACAGAG CTGGCAGTATTATCTGGATGGCGGAGGGAGGGGAGGAAGAAGAGGAGAAG GGACATTGAAGAAAGCGGTGGGATTGTTGAACGGGTTTCTGAGCGGGCAG CAGCAGCAGCAGCAGCAGCAGCAACAGAAACACGGGCACCAGATAATGGG AGAAGAAGGAGAGGCGAGCAGCACCAGTAGAAGTAGCAGCAGTTGCAATC GCTCACCCCGAGGAGGGGAGGGTGGGGAGGAGGAAGGATTGGAATGCAAA AAAGACGGCGAAGGAGAGGAGGAGGGGGAGAAGGTCATTTTACACACACT CCTAGAAGTGCGGTTGGATGTCTTGAGCCGGAGTTGTAGGAGGAGGTTGA AGGTATGGAGTGAAGAGGTGGAGCGTGCTCCCCCTTCTTTCTTAGTGCTG GGCGCTGGGGAGGGAGGCGTGAATGGACTTTTTGTCCTGAGGGGCTTTCA CGGTAGAAGTCCCTGGTACGGGAAGGAGGGGGAGGAGGGGGAGGAAGGGA GGGAAGGAGGAAGGGGGGGGGGAAGGCCATCGGTGGCGGTTGTGAAGGAT GAGAGTGGGAGTGGCAGCAGTAACAGTAAAAAGGGCAGCAGCAGCAGCAG TAGCAGTAGTGGTACTAGTGGCAGCAGCAGCAGTAAGAACAGCAAGGTCG CTGGGAAAATCACCATCAGCAGCAGCAGCATCACCGAGCTATCTTCTTTG CCCTTCTTCGCCTCTTCCGTCGCTATGGCTGCAGGGAAAGGGGAGGAGAA CGAGGGCAGCAGCAGCGCTACCAACACCACCAGTACCACCAGCAGCAGCA GCAACAGCAGTGCGCCTCCCTCTTCTTCCTCCTTCTACTCCCCTCCCTTT TCATCCTCTTCCTGTAACGGCGGATGGTGCATTGTCTCGCTCCTGGAGAA GAAGAAGAAAAAAGGCAAGCTTCTCTACTACCACCGACAGAAATCGGTAC TCCCCCCTTTGGAGGGGTGGGAGGTTGTGGGGGAGGAAAAAGATAGGGAG CGGGAAAGGGAGAGAGAAAAAGAGAGGGAAAAGGAGGGGGGGCGTGTTCT CCCACCTGCTCCTACATTGATGCCTCACGTCGAAAAGGTGAAGATTGGAG CAGGAGGAGGAAGGGGGGGAACGCTTCCCGCAGCAAGGATGGGGAGTAGC CGTTGGGAGTGA back to topprotein sequence of NO08G03740.1 >NO08G03740.1-protein ID=NO08G03740.1-protein|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp MDYSGMTDPLPPSSDSSSSNSNGGGENFLLRCLDGQVKLALQAQVAIAKN IDSFLTLLHLFHSSLIAIPLPPPAAVDLTQALKDAQRETIVVNGREFAGD PQGLQEEMHRLVNPLVVDVETATLLCQDILRASSRTASGGDSYVVASSLL VRRGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGE GGKEGGVGMQAQIQAQSWQYYLDGGGRGGRRGEGTLKKAVGLLNGFLSGQ QQQQQQQQQKHGHQIMGEEGEASSTSRSSSSCNRSPRGGEGGEEEGLECK KDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFLVL GAGEGGVNGLFVLRGFHGRSPWYGKEGEEGEEGREGGRGGGRPSVAVVKD ESGSGSSNSKKGSSSSSSSSGTSGSSSSKNSKVAGKITISSSSITELSSL PFFASSVAMAAGKGEENEGSSSATNTTSTTSSSSNSSAPPSSSSFYSPPF SSSSCNGGWCIVSLLEKKKKKGKLLYYHRQKSVLPPLEGWEVVGEEKDRE REREREKEREKEGGRVLPPAPTLMPHVEKVKIGAGGGRGGTLPAARMGSS RWE* back to topmRNA from alignment at chr8:1053604..1055669- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03740.1 ID=NO08G03740.1|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at chr8:1053604..1055669- (Nannochloropsis oceanica) ATGGACTACTCTGGGATGACTGACCCCCTTCCTCCTTCCAGCGACAGCAG
CAGCAGCAACAGTAACGGGGGAGGAGAGAACTTCCTCCTTCGTTGCCTCG
ACGGACAAGTCAAGCTTGCGCTACAAGCCCAGGTTGCCATTGCGAAGAAT
ATCGACAGCTTCCTCACCCTGCTTCATCTTTTCCATTCCTCTCTCATCGC
CATCCCCCTCCCTCCCCCAGCGGCGGTCGACTTGACCCAGGCGTTGAAAG
ATGCGCAAAGGGAGACGATTGTGGTTAATGGGAGGGAATTTGCGGGCGAC
CCGCAGGGGTTACAGGAAGAAATGCATCGACTGGTAAACCCCCTGGTAGT
GGACGTGGAAACTGCCACCCTCCTTTGTCAGGACATCCTGAGAGCCTCCT
CTCGAACGGCGTCGGGAGGTAGGGTGATGTCCAATCTTCGTGTTTCCTCT
CTTCCACCCTCCGTGCCTCTGCCTCTGTCTTCCCTCTCCTCTCTCAATCC
TTCTTGTCGAGTGGCACGACACCGCCTGTCTTGTCCTCCCTCACCCTATT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCGATTCGTACGTC
GTTGCCTCCTCCCTTCTAGTCCGTCGTGGTAACCTGCTCACCCCTGCCGC
CGCTGAATCCTCCCTCCCCATCACAATAAACATCGACCCGGTAGTAGGCT
CGGTTCATATCATCGCGGAAAATAGGTACATCTTGCACTGGGATATGTTC
GGGGAGGACAAGGGCGAGGGTGGGAAGGAGGGAGGGGTGGGGATGCAGGC
ACAGATCCAGGCACAGAGCTGGCAGTATTATCTGGATGGCGGAGGGAGGG
GAGGAAGAAGAGGAGAAGGGACATTGAAGAAAGCGGTGGGATTGTTGAAC
GGGTTTCTGAGCGGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAAACA
CGGGCACCAGATAATGGGAGAAGAAGGAGAGGCGAGCAGCACCAGTAGAA
GTAGCAGCAGTTGCAATCGCTCACCCCGAGGAGGGGAGGGTGGGGAGGAG
GAAGGATTGGAATGCAAAAAAGACGGCGAAGGAGAGGAGGAGGGGGAGAA
GGTCATTTTACACACACTCCTAGAAGTGCGGTTGGATGTCTTGAGCCGGA
GTTGTAGGAGGAGGTTGAAGGTATGGAGTGAAGAGGTGGAGCGTGCTCCC
CCTTCTTTCTTAGTGCTGGGCGCTGGGGAGGGAGGCGTGAATGGACTTTT
TGTCCTGAGGGGCTTTCACGGTAGAAGTCCCTGGTACGGGAAGGAGGGGG
AGGAGGGGGAGGAAGGGAGGGAAGGAGGAAGGGGGGGGGGAAGGCCATCG
GTGGCGGTTGTGAAGGATGAGAGGTGGCTTGCGTATAAATTGGGAGAAGG
AGGGGGGGGGGGGGATTGGCAAAGCTAACAGATTTGGTGTCTGGTCGTCC
CATAAGCAGTGGGAGTGGCAGCAGTAACAGTAAAAAGGGCAGCAGCAGCA
GCAGTAGCAGTAGTGGTACTAGTGGCAGCAGCAGCAGTAAGAACAGCAAG
GTCGCTGGGAAAATCACCATCAGCAGCAGCAGCATCACCGAGCTATCTTC
TTTGCCCTTCTTCGCCTCTTCCGTCGCTATGGCTGCAGGGAAAGGGGAGG
AGAACGAGGGCAGCAGCAGCGCTACCAACACCACCAGTACCACCAGCAGC
AGCAGCAACAGCAGTGCGCCTCCCTCTTCTTCCTCCTTCTACTCCCCTCC
CTTTTCATCCTCTTCCTGTAACGGCGGATGGTGCATTGTCTCGCTCCTGG
AGAAGAAGAAGAAAAAAGGCAAGCTTCTCTACTACCACCGACAGAAATCG
GTACTCCCCCCTTTGGAGGGGTGGGAGGTTGTGGGGGAGGAAAAAGATAG
GGAGCGGGAAAGGGAGAGAGAAAAAGAGAGGGAAAAGGAGGGGGGGCGTG
TTCTCCCACCTGCTCCTACATTGATGCCTCACGTCGAAAAGGTGAAGATT
GGAGCAGGAGGAGGAAGGGGGGGAACGCTTCCCGCAGCAAGGATGGGGAG
TAGCCGTTGGGAGTGA back to topCoding sequence (CDS) from alignment at chr8:1053604..1055669- >NO08G03740.1 ID=NO08G03740.1|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr8:1053604..1055669- (Nannochloropsis oceanica) ATGGACTACTCTGGGATGACTGACCCCCTTCCTCCTTCCAGCGACAGCAG CAGCAGCAACAGTAACGGGGGAGGAGAGAACTTCCTCCTTCGTTGCCTCG ACGGACAAGTCAAGCTTGCGCTACAAGCCCAGGTTGCCATTGCGAAGAAT ATCGACAGCTTCCTCACCCTGCTTCATCTTTTCCATTCCTCTCTCATCGC CATCCCCCTCCCTCCCCCAGCGGCGGTCGACTTGACCCAGGCGTTGAAAG ATGCGCAAAGGGAGACGATTGTGGTTAATGGGAGGGAATTTGCGGGCGAC CCGCAGGGGTTACAGGAAGAAATGCATCGACTGGTAAACCCCCTGGTAGT GGACGTGGAAACTGCCACCCTCCTTTGTCAGGACATCCTGAGAGCCTCCT CTCGAACGGCGTCGGGAGGCGATTCGTACGTCGTTGCCTCCTCCCTTCTA GTCCGTCGTGGTAACCTGCTCACCCCTGCCGCCGCTGAATCCTCCCTCCC CATCACAATAAACATCGACCCGGTAGTAGGCTCGGTTCATATCATCGCGG AAAATAGGTACATCTTGCACTGGGATATGTTCGGGGAGGACAAGGGCGAG GGTGGGAAGGAGGGAGGGGTGGGGATGCAGGCACAGATCCAGGCACAGAG CTGGCAGTATTATCTGGATGGCGGAGGGAGGGGAGGAAGAAGAGGAGAAG GGACATTGAAGAAAGCGGTGGGATTGTTGAACGGGTTTCTGAGCGGGCAG CAGCAGCAGCAGCAGCAGCAGCAACAGAAACACGGGCACCAGATAATGGG AGAAGAAGGAGAGGCGAGCAGCACCAGTAGAAGTAGCAGCAGTTGCAATC GCTCACCCCGAGGAGGGGAGGGTGGGGAGGAGGAAGGATTGGAATGCAAA AAAGACGGCGAAGGAGAGGAGGAGGGGGAGAAGGTCATTTTACACACACT CCTAGAAGTGCGGTTGGATGTCTTGAGCCGGAGTTGTAGGAGGAGGTTGA AGGTATGGAGTGAAGAGGTGGAGCGTGCTCCCCCTTCTTTCTTAGTGCTG GGCGCTGGGGAGGGAGGCGTGAATGGACTTTTTGTCCTGAGGGGCTTTCA CGGTAGAAGTCCCTGGTACGGGAAGGAGGGGGAGGAGGGGGAGGAAGGGA GGGAAGGAGGAAGGGGGGGGGGAAGGCCATCGGTGGCGGTTGTGAAGGAT GAGAGTGGGAGTGGCAGCAGTAACAGTAAAAAGGGCAGCAGCAGCAGCAG TAGCAGTAGTGGTACTAGTGGCAGCAGCAGCAGTAAGAACAGCAAGGTCG CTGGGAAAATCACCATCAGCAGCAGCAGCATCACCGAGCTATCTTCTTTG CCCTTCTTCGCCTCTTCCGTCGCTATGGCTGCAGGGAAAGGGGAGGAGAA CGAGGGCAGCAGCAGCGCTACCAACACCACCAGTACCACCAGCAGCAGCA GCAACAGCAGTGCGCCTCCCTCTTCTTCCTCCTTCTACTCCCCTCCCTTT TCATCCTCTTCCTGTAACGGCGGATGGTGCATTGTCTCGCTCCTGGAGAA GAAGAAGAAAAAAGGCAAGCTTCTCTACTACCACCGACAGAAATCGGTAC TCCCCCCTTTGGAGGGGTGGGAGGTTGTGGGGGAGGAAAAAGATAGGGAG CGGGAAAGGGAGAGAGAAAAAGAGAGGGAAAAGGAGGGGGGGCGTGTTCT CCCACCTGCTCCTACATTGATGCCTCACGTCGAAAAGGTGAAGATTGGAG CAGGAGGAGGAAGGGGGGGAACGCTTCCCGCAGCAAGGATGGGGAGTAGC CGTTGGGAGTGA back to top
|