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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:883558..886115 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03220.1 vs.
Match: EWM26830.1 (hypothetical protein Naga_100018g4 [Nannochloropsis gaditana]) HSP 1 Score: 241.9 bits (616), Expect = 4.700e-60 Identity = 165/392 (42.09%), Postives = 226/392 (57.65%), Query Frame = 0
Query: 188 RQYIAEEILTLKCPREGCRRAFLDFDGCFALTCPGCGCAFCAACIEDCGDDAHEHCNVVHQGLFGTLDKFNEIQGHRRLVAVTRYLTEVVCVHESRGWVEERLLGPGGALEKDLGEVGIRVQEVKRSLAGEYFLPFGAGGDKGGGGVGKALAVRLGAADDGEQEQQQEQEQEEGLAARQRRRLGELFLKRQGYVATEKDAVSRFLGTVVTASLIVVGVWRLTDVADSTSSTRDRSSSDNEEWGVES-TRLIGGAMLGPAMVLLLTGRGNQLIQSLRIALLTALIVIPLFYFSEPLITFVVMILVNVLSVTAHILGMLLDLCVEGARLSKIMLSNLSIEVAALY----------------------GLPGVKETLSTVGLLPPVELGLETATS 557
RQ+IAEEILTLKCPR+GCRRAFLDFDGCFALTCP CGC FCAACIEDCGDDAH HC VH G+FGTL++FN+IQ RRLV VT YL + + ES +V ++L G + +DL +VGI+V+EVK+ L G G+ ++ + A+ + +Q +R RRL L GY A E D SR LG + T LI+ GV L S S D + + T+L G M P LLLTGRG QL+QS +A LTA++ +PL Y+S L+ +++ LV++LSV AHI+G L+D+ VE +RL++++LS L +++ + L + + L ++GLLPP ++ L AT+
Sbjct: 5 RQHIAEEILTLKCPRKGCRRAFLDFDGCFALTCPRCGCGFCAACIEDCGDDAHNHCRDVHYGVFGTLERFNDIQRKRRLVGVTEYL-KWISQQESPAFV-SKVLESRGPVSQDLADVGIQVEEVKKVLNG-----------------GQVPSLDMNASIGLFSTRNHTNDQ--SWISRWLRRL----LDGPGY-APEDDITSRLLGNITTGMLILAGVHGL---VGSPSHDTDAPYGYGMWYFLGGMTKLFYGLMAAPPACLLLTGRGKQLLQSAHVAFLTAVVFLPL-YYSADLLPTLILCLVSILSVIAHIIGFLVDVLVECSRLAQLLLSELWTKLSQMSSFATNAFNRSTLWPCYRRIAEDALFNIVKNLRSIGLLPPADVELRIATA 366
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03220.1 ID=NO08G03220.1|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp
TGTTGCATCTATTTCCGAGGCTCATCGGCAAACAGCAGGCCCATCTGGCT
GTTCGCAGTCCTCCACCTAGGGAAAACGCCTGAGGCTTCCCTCTGCTGCG
ACTGATACGACTGGGCAAGACCAGGCAAGCTCCAGGCTTTATATTACTCA
CACATCAAATATCCCTCTTCATCTTGTCGACTTATCCCACCAACGAAGCC
CCCTCAAAACCATACGACATACAGGGACTCGCCACCTCGGCTCGCGCGTT
CCACAAGGGAGGACCCCTCCGTCTTCATACTGTCAATACCCCTGGGGCAG
AGAAATCCTAGACCTCGCATATACCTACCACCCAGCCAGCGGGGACACAA
TTATGGTGCGGCCGCTTGTCCCTCCCATCCCCTTAGCTGCCCCTACTTCT
GCCCCCACTGGCGACCCTCCAGACGATGCGCGATGCCGAAGCCCCATGTC
TAATTCCAGGTCCTCCGCGCCTGTTTTCCTTAGTCCCGCGGGTAAACCCT
GCGTGATCTGTTTCGACATGGAGCGGGATGGCGTAGTGTGCAGTGGTACC
GAGAATCACTTCGTTTGCCGCGGATGTCTGCAGGGCTTCATCCGCAACCT
CGAGCCCATTACCATCCGTCGTTCGGGCGGTTGTGTCAGCTGTCCTGCCA
TTGAAGAAAGCACAGGCCACGCTTGTGACGCGGACCCCTGGAGTTACGAT
GACCTCGTCAACCTTCTCGATCCAAGTACCCAGCGCATGTACGTCCAGCG
ACTCGAGGGATTATTAGCCAGTGTTTTATCAGCCGAGACGGCCATCACGG
GGAAGGCTCCCCGTTCCCCCTATCGAGGCAGTATTGGGGGTGGGCGACGT
TCCCGGTCCGTGAGTCCCCTCCCCCTCTCCTCCTCCTCCGATCATGACAA
AATACAAGGATATCGCCAATACATTGCTGAAGAAATTTTGACACTGAAGT
GCCCCAGAGAAGGGTGTCGTCGAGCTTTCTTGGATTTTGATGGATGTTTT
GCGTTGACCTGCCCTGGGTGTGGGTGTGCTTTTTGTGCGGCCTGCATAGA
GGATTGTGGGGACGATGCCCACGAACACTGCAACGTGGTCCACCAGGGGT
TATTTGGGACTTTGGACAAATTTAATGAGATACAGGGGCACAGGCGATTG
GTGGCCGTGACGAGATACTTGACGGAGGTGGTGTGTGTGCACGAGTCGAG
GGGATGGGTGGAGGAAAGGTTGCTTGGGCCAGGGGGGGCGTTGGAGAAGG
ATTTGGGGGAGGTGGGTATAAGGGTACAGGAGGTAAAGCGCTCACTTGCG
GGGGAGTATTTTTTGCCTTTCGGTGCGGGAGGTGATAAAGGCGGCGGTGG
TGTTGGCAAGGCTCTCGCTGTTCGGTTGGGGGCGGCTGATGATGGCGAGC
AGGAGCAGCAGCAGGAGCAGGAGCAGGAAGAGGGTTTAGCTGCTCGACAG
CGGCGGCGGCTCGGGGAGCTGTTCTTGAAAAGACAAGGGTATGTAGCGAC
AGAGAAAGATGCAGTCTCCCGATTCTTGGGTACGGTAGTGACGGCCTCCC
TGATCGTGGTGGGTGTGTGGCGGTTGACTGATGTGGCCGACAGCACCAGC
AGTACCCGCGACCGCAGCAGCAGTGATAATGAGGAATGGGGAGTGGAGAG
CACGCGATTGATTGGGGGAGCGATGCTGGGACCAGCAATGGTGTTACTGC
TGACGGGGAGGGGAAATCAGCTTATACAATCGTTGAGAATTGCCTTGCTC
ACGGCTTTGATAGTTATCCCTCTTTTCTATTTCTCCGAGCCTTTGATTAC
GTTTGTAGTGATGATTTTGGTGAATGTCCTATCGGTGACAGCGCATATTC
TGGGGATGCTTCTAGATCTTTGTGTGGAGGGAGCGCGGCTCTCCAAAATT
ATGCTGTCGAATTTATCTATTGAGGTTGCAGCACTGTACGGGCTGCCAGG
AGTGAAGGAGACGTTGAGTACTGTGGGTCTGCTGCCACCGGTTGAACTGG
GGTTGGAGACAGCCACGTCTTGATGAAAAGAAGGAGAGGACGGGAAATAG
GGGGAGGGTGATAAAAAGTGTGGCATAAGGGAAGGGTAAATGTGTCTTTG
TTTAAGTGCATGCATGCCTGCAGGCCCGCACGGGCTGTAAAAAGAGTGAG
ATGTAGATTATTTATTGGATGACGGCATCACATGCGAAGGCCGGTTAAAT
GTAGCTTTATAATATTGAAGAACTATAAGCAATTTTTGACTTTTCGAAA back to topprotein sequence of NO08G03220.1 >NO08G03220.1-protein ID=NO08G03220.1-protein|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MVRPLVPPIPLAAPTSAPTGDPPDDARCRSPMSNSRSSAPVFLSPAGKPC
VICFDMERDGVVCSGTENHFVCRGCLQGFIRNLEPITIRRSGGCVSCPAI
EESTGHACDADPWSYDDLVNLLDPSTQRMYVQRLEGLLASVLSAETAITG
KAPRSPYRGSIGGGRRSRSVSPLPLSSSSDHDKIQGYRQYIAEEILTLKC
PREGCRRAFLDFDGCFALTCPGCGCAFCAACIEDCGDDAHEHCNVVHQGL
FGTLDKFNEIQGHRRLVAVTRYLTEVVCVHESRGWVEERLLGPGGALEKD
LGEVGIRVQEVKRSLAGEYFLPFGAGGDKGGGGVGKALAVRLGAADDGEQ
EQQQEQEQEEGLAARQRRRLGELFLKRQGYVATEKDAVSRFLGTVVTASL
IVVGVWRLTDVADSTSSTRDRSSSDNEEWGVESTRLIGGAMLGPAMVLLL
TGRGNQLIQSLRIALLTALIVIPLFYFSEPLITFVVMILVNVLSVTAHIL
GMLLDLCVEGARLSKIMLSNLSIEVAALYGLPGVKETLSTVGLLPPVELG
LETATS* back to topmRNA from alignment at chr8:883558..886115+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03220.1 ID=NO08G03220.1|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2558bp|location=Sequence derived from alignment at chr8:883558..886115+ (Nannochloropsis oceanica)
TGTTGCATCTATTTCCGAGGCTCATCGGCAAACAGCAGGCCCATCTGGCT
GTTCGCAGTCCTCCACCTAGGGAAAACGCCTGAGGCTTCCCTCTGCTGCG
ACTGATACGACTGGGCAAGACCAGGCAAGCTCCAGGCTTTATATTACTCA
CACATCAAATATCCCTCTTCATCTTGTCGACTTATCCCACCAACGAAGCC
CCCTCAAAACCATACGACATACAGGGACTCGCCACCTCGGCTCGCGCGTT
CCACAAGGGAGGACCCCTCCGTCTTCATACTGTCAATACCCCTGGGGCAG
AGAAATCCTAGACCTCGCATATACCTACCACCCAGCCAGCGGGGACACAA
TTATGGTGCGGCCGCTTGTCCCTCCCATCCCCTTAGCTGCCCCTACTTCT
GCCCCCACTGGCGACCCTCCAGACGATGCGCGATGCCGAAGCCCCATGTC
TAATTCCAGGTCCTCCGCGCCTGTTTTCCTTAGTCCCGCGGGTAAACCCT
GCGTGATCTGTTTCGACATGGAGCGGGATGGCGTAGTGTGCAGTGGTACC
GAGAATCACTTCGTTTGCCGCGGATGTCTGCAGGTACGTTGTCTGGGGTC
GGATGGTCTGAGGGGGGTGGATGGAACAACTGGAATCGAATGGACGCATT
TATACATATAATTTGCATCGTCAAGTCTATAGCTTGTATATTTGATTATG
ATGATGCCCTAACAGTGTGCACTCCGGTTTTCTTCCTTTTGGGAGGCAAG
AAAATATACCCGACTCTATTACCCACCTGCACACCCTATTCCGCCACACG
AATGAACGTCTCCAAGTACAACCGCTCCACCATCAAAATCCGCCTTCTGA
CCCTGTCCATCCCTGCATCTATCCCACCGTACATATATGTAGGGCTTCAT
CCGCAACCTCGAGCCCATTACCATCCGTCGTTCGGGCGGTTGTGTCAGCT
GTCCTGCCATTGAAGAAAGCACAGGCCACGCTTGTGACGCGGACCCCTGG
AGTTACGATGACCTCGTCAACCTTCTCGATCCAAGTACCCAGCGCATGTA
CGTCCAGCGACTCGAGGGATTATTAGCCAGTGTTTTATCAGCCGAGACGG
CCATCACGGGGAAGGCTCCCCGTTCCCCCTATCGAGGCAGTATTGGGGGT
GGGCGACGTTCCCGGTCCGTGAGTCCCCTCCCCCTCTCCTCCTCCTCCGA
TCATGACAAAATACAAGGATATCGCCAATACATTGCTGAAGAAATTTTGA
CACTGAAGTGCCCCAGAGAAGGGTGTCGTCGAGCTTTCTTGGATTTTGAT
GGATGTTTTGCGTTGACCTGCCCTGGGTGTGGGTGTGCTTTTTGTGCGGC
CTGCATAGAGGATTGTGGGGACGATGCCCACGAACACTGCAACGTGGTCC
ACCAGGGGTTATTTGGGACTTTGGACAAATTTAATGAGATACAGGGGCAC
AGGCGATTGGTGGCCGTGACGAGATACTTGACGGAGGTGGTGTGTGTGCA
CGAGTCGAGGGGATGGGTGGAGGAAAGGTTGCTTGGGCCAGGGGGGGCGT
TGGAGAAGGATTTGGGGGAGGTGGGTATAAGGGTACAGGAGGTAAAGCGC
TCACTTGCGGGGGAGTATTTTTTGCCTTTCGGTGCGGGAGGTGATAAAGG
CGGCGGTGGTGTTGGCAAGGCTCTCGCTGTTCGGTTGGGGGCGGCTGATG
ATGGCGAGCAGGAGCAGCAGCAGGAGCAGGAGCAGGAAGAGGGTTTAGCT
GCTCGACAGCGGCGGCGGCTCGGGGAGCTGTTCTTGAAAAGACAAGGGTA
TGTAGCGACAGAGAAAGATGCAGTCTCCCGATTCTTGGGTACGGTAGTGA
CGGCCTCCCTGATCGTGGTGGGTGTGTGGCGGTTGACTGATGTGGCCGAC
AGCACCAGCAGTACCCGCGACCGCAGCAGCAGTGATAATGAGGAATGGGG
AGTGGAGAGCACGCGATTGATTGGGGGAGCGATGCTGGGACCAGCAATGG
TGTTACTGCTGACGGGGAGGGGAAATCAGCTTATACAATCGTTGAGAATT
GCCTTGCTCACGGCTTTGATAGTTATCCCTCTTTTCTATTTCTCCGAGCC
TTTGATTACGTTTGTAGTGATGATTTTGGTGAATGTCCTATCGGTGACAG
CGCATATTCTGGGGATGCTTCTAGATCTTTGTGTGGAGGGAGCGCGGCTC
TCCAAAATTATGCTGTCGAATTTATCTATTGAGGTTGCAGCACTGTACGG
GCTGCCAGGAGTGAAGGAGACGTTGAGTACTGTGGGTCTGCTGCCACCGG
TTGAACTGGGGTTGGAGACAGCCACGTCTTGATGAAAAGAAGGAGAGGAC
GGGAAATAGGGGGAGGGTGATAAAAAGTGTGGCATAAGGGAAGGGTAAAT
GTGTCTTTGTTTAAGTGCATGCATGCCTGCAGGCCCGCACGGGCTGTAAA
AAGAGTGAGATGTAGATTATTTATTGGATGACGGCATCACATGCGAAGGC
CGGTTAAATGTAGCTTTATAATATTGAAGAACTATAAGCAATTTTTGACT
TTTCGAAA back to topCoding sequence (CDS) from alignment at chr8:883558..886115+ >NO08G03220.1 ID=NO08G03220.1|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr8:883558..886115+ (Nannochloropsis oceanica)
ATGGTGCGGCCGCTTGTCCCTCCCATCCCCTTAGCTGCCCCTACTTCTGC
CCCCACTGGCGACCCTCCAGACGATGCGCGATGCCGAAGCCCCATGTCTA
ATTCCAGGTCCTCCGCGCCTGTTTTCCTTAGTCCCGCGGGTAAACCCTGC
GTGATCTGTTTCGACATGGAGCGGGATGGCGTAGTGTGCAGTGGTACCGA
GAATCACTTCGTTTGCCGCGGATGTCTGCAGGGCTTCATCCGCAACCTCG
AGCCCATTACCATCCGTCGTTCGGGCGGTTGTGTCAGCTGTCCTGCCATT
GAAGAAAGCACAGGCCACGCTTGTGACGCGGACCCCTGGAGTTACGATGA
CCTCGTCAACCTTCTCGATCCAAGTACCCAGCGCATGTACGTCCAGCGAC
TCGAGGGATTATTAGCCAGTGTTTTATCAGCCGAGACGGCCATCACGGGG
AAGGCTCCCCGTTCCCCCTATCGAGGCAGTATTGGGGGTGGGCGACGTTC
CCGGTCCGTGAGTCCCCTCCCCCTCTCCTCCTCCTCCGATCATGACAAAA
TACAAGGATATCGCCAATACATTGCTGAAGAAATTTTGACACTGAAGTGC
CCCAGAGAAGGGTGTCGTCGAGCTTTCTTGGATTTTGATGGATGTTTTGC
GTTGACCTGCCCTGGGTGTGGGTGTGCTTTTTGTGCGGCCTGCATAGAGG
ATTGTGGGGACGATGCCCACGAACACTGCAACGTGGTCCACCAGGGGTTA
TTTGGGACTTTGGACAAATTTAATGAGATACAGGGGCACAGGCGATTGGT
GGCCGTGACGAGATACTTGACGGAGGTGGTGTGTGTGCACGAGTCGAGGG
GATGGGTGGAGGAAAGGTTGCTTGGGCCAGGGGGGGCGTTGGAGAAGGAT
TTGGGGGAGGTGGGTATAAGGGTACAGGAGGTAAAGCGCTCACTTGCGGG
GGAGTATTTTTTGCCTTTCGGTGCGGGAGGTGATAAAGGCGGCGGTGGTG
TTGGCAAGGCTCTCGCTGTTCGGTTGGGGGCGGCTGATGATGGCGAGCAG
GAGCAGCAGCAGGAGCAGGAGCAGGAAGAGGGTTTAGCTGCTCGACAGCG
GCGGCGGCTCGGGGAGCTGTTCTTGAAAAGACAAGGGTATGTAGCGACAG
AGAAAGATGCAGTCTCCCGATTCTTGGGTACGGTAGTGACGGCCTCCCTG
ATCGTGGTGGGTGTGTGGCGGTTGACTGATGTGGCCGACAGCACCAGCAG
TACCCGCGACCGCAGCAGCAGTGATAATGAGGAATGGGGAGTGGAGAGCA
CGCGATTGATTGGGGGAGCGATGCTGGGACCAGCAATGGTGTTACTGCTG
ACGGGGAGGGGAAATCAGCTTATACAATCGTTGAGAATTGCCTTGCTCAC
GGCTTTGATAGTTATCCCTCTTTTCTATTTCTCCGAGCCTTTGATTACGT
TTGTAGTGATGATTTTGGTGAATGTCCTATCGGTGACAGCGCATATTCTG
GGGATGCTTCTAGATCTTTGTGTGGAGGGAGCGCGGCTCTCCAAAATTAT
GCTGTCGAATTTATCTATTGAGGTTGCAGCACTGTACGGGCTGCCAGGAG
TGAAGGAGACGTTGAGTACTGTGGGTCTGCTGCCACCGGTTGAACTGGGG
TTGGAGACAGCCACGTCTTGA back to top
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