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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:756736..758737 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02700.1 vs.
Match: EWM26751.1 (hypothetical protein Naga_100001g178 [Nannochloropsis gaditana]) HSP 1 Score: 317.0 bits (811), Expect = 1.200e-82 Identity = 240/550 (43.64%), Postives = 332/550 (60.36%), Query Frame = 0
Query: 54 ESLDEREADLKQCVDELARLEGYHAYVNEILLSAGNGDAFNSKCASSSSTDPEIVIDDPFLLCNAAERLVLEAVAGRRAHLYLLDT--VAEN----DGKV---YLQSWLVDEDGQREVARVPVEARREEDEQDPEKA-SAAHALVCALQEEEPLLPGGACLVARVVDRAGLVLGVVQIIKRQRSLGSQDEADSPFTQADLAALGNVQDQLASTLLLLRLLQRRNRLQDNMVAIAAHNNMLTSSNSNDNSRSS--SPQRMRSLRTSPAAAATATGTDVSTTFCPTLSNGRMPVSSFCKVTARGREAIIREEEEKAAIAGATAITSQIQLQQQHEEE---EGLRGKYIKAKIYIRQLEKELRQKVRGQERALLARQASEGAKRIFGRVEEMEALVAELSIRQEQLRYENDALSTAKIQAELAANAATAQAEAKARMEIDTLAESKARAEVELRAQIRQLEREQETVKATVARLKAEAKASEVEREQMRHDMRRCQKKLEKSQNAVKDARVYQEITQAELLDLKESLQRMEAGTNDLRQQLLCQEGEGEGGRP 589
+ +D + + + VDEL RLEGYHA++NEILLS G N S P+ VIDDP L AAE+LVL +A R A+LYLL + +A N G + +L SW +DE GQ + R+PV +++E E+ E+ S A L AL+EE PLL GG LVAR++DR G VLG+V++ + +D F QA ++AL +VQD+LAS LLLLRL+ R++ +D ++A + + D + S SP S R A++A G PV+ F + T+ R+A ++ A A +I +L QQ E LR KY+KAK YIR+LE+ LR K R + RALLARQA+EGA+R+F R EE++AL+ ELS RQEQLR EN+ L AK++A AANAA++Q EA+AR + ++LA + AR+E ELR ++ QL+ E ++A R +AE A ++E++ D+ RCQKKL+ SQ AVK AR YQEI+QAEL DLKESL+RMEAGTN+LRQ + +GG P
Sbjct: 26 QKIDSSQMECEASVDELRRLEGYHAFMNEILLSGAVGSLSNGDSDVFSPLTPQAVIDDPISLSRAAEKLVLNTIASRHANLYLLHSPSIASNILGHGGNLLPLFLTSWSMDERGQPRIKRIPVAMQQDEIERMEEEGDSTALGLNIALREEGPLLLGGVSLVARILDRKGQVLGLVEVTIDK---APEDFDGDIFPQAQVSALDSVQDELASVLLLLRLVLLRSQREDPLLAPCVNQ-------AGDPAASGIVSP----STRRIQASSAL----------------GNPPVNRFSENTSFPRKAHFDSGDKFDGEALAPSIGFAGELAQQPPERGELNALRQKYLKAKSYIRRLERGLRLKTRSEGRALLARQATEGAERLFARTEELQALITELSGRQEQLRLENETLRAAKVKALDAANAASSQ-EAEARTQFESLARTHARSEDELRTRVYQLDSESRAMRANAVRYEAEKNALIRDKERLERDLLRCQKKLKDSQQAVKQARDYQEISQAELWDLKESLERMEAGTNELRQHFQYSQNY-DGGDP 543
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02700.1 ID=NO08G02700.1|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp TCATTTCTCTACATCGCCCCTCTCACATGTTTCCCGATTACCACCCTTAT GTCTACAGGGTAAGCCACCAGGTCGGCTGGCAAAGCACGTCATGTCTACC GAGAGGGTGCAATCAGCCTGACTCGCCGACAGCGGGGACGTTATGCCTGA TATACGGCCGTTGGCCGCCTCGCCCCCTTTTGCCGAGACTCCACGCCATG CACAAACAACCGTGCCATCCTTATCACCACAGCGCAATCACAACATGCAT GAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGTGCTGCA AGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCGATGAGC TTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTGCTCAGT GCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATCCTCTAC TGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACGCTGCAG AAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTCTATCTG CTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAGCTGGTT AGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGGAAGCAC GGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCGCATGCA TTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGGCGCATG CCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAGTGGTGC AGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCAGATAGC CCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGACCAGTT GGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATCGGCTGC AAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACCAGCAGC AACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCGTAGCTT GAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACGTGTCCA CTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCATCTTTC TGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGAGGAGGA AAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATACAGCTAC AGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATCAAGGCC AAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGTGAGGGG GCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCAAACGTA TATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTCTCCATA AGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGCCAAGAT ACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGGCGAAAG CCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCCGAGGTG GAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAACAGTGAA GGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGGTGGAAA GGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTGGAGAAG AGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTACCCAAGC GGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCGGGACGA ACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAGGGTGGG AGGCCGAGGGTTTTGTAAGAAAGGCGAAATATTAGGGGGGTATTTGTACA TATTAGAAGTAAAGTACAACAGAAAAACCGAAGGAATACATTAATAAGAC TG back to topprotein sequence of NO08G02700.1 >NO08G02700.1-protein ID=NO08G02700.1-protein|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp MPDIRPLAASPPFAETPRHAQTTVPSLSPQRNHNMHELSTLWQFERDTCK VLQESLDEREADLKQCVDELARLEGYHAYVNEILLSAGNGDAFNSKCASS SSTDPEIVIDDPFLLCNAAERLVLEAVAGRRAHLYLLDTVAENDGKVYLQ SWLVDEDGQREVARVPVEARREEDEQDPEKASAAHALVCALQEEEPLLPG GACLVARVVDRAGLVLGVVQIIKRQRSLGSQDEADSPFTQADLAALGNVQ DQLASTLLLLRLLQRRNRLQDNMVAIAAHNNMLTSSNSNDNSRSSSPQRM RSLRTSPAAAATATGTDVSTTFCPTLSNGRMPVSSFCKVTARGREAIIRE EEEKAAIAGATAITSQIQLQQQHEEEEGLRGKYIKAKIYIRQLEKELRQK VRGQERALLARQASEGAKRIFGRVEEMEALVAELSIRQEQLRYENDALST AKIQAELAANAATAQAEAKARMEIDTLAESKARAEVELRAQIRQLEREQE TVKATVARLKAEAKASEVEREQMRHDMRRCQKKLEKSQNAVKDARVYQEI TQAELLDLKESLQRMEAGTNDLRQQLLCQEGEGEGGRPRVL* back to topmRNA from alignment at chr8:756736..758737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02700.1 ID=NO08G02700.1|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp|location=Sequence derived from alignment at chr8:756736..758737- (Nannochloropsis oceanica) TCATTTCTCTACATCGCCCCTCTCACATGTTTCCCGATTACCACCCTTAT
GTCTACAGGGTAAGCCACCAGGTCGGCTGGCAAAGCACGTCATGTCTACC
GAGAGGGTGCAATCAGCCTGACTCGCCGACAGCGGGGACGTTATGCCTGA
TATACGGCCGTTGGCCGCCTCGCCCCCTTTTGCCGAGACTCCACGCCATG
CACAAACAACCGTGCCATCCTTATCACCACAGCGCAATCACAACATGCAT
GAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGTGCTGCA
AGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCGATGAGC
TTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTGCTCAGT
GCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATCCTCTAC
TGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACGCTGCAG
AAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTCTATCTG
CTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAGCTGGTT
AGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGGAAGCAC
GGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCGCATGCA
TTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGGCGCATG
CCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAGTGGTGC
AGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCAGATAGC
CCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGACCAGTT
GGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATCGGCTGC
AAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACCAGCAGC
AACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCGTAGCTT
GAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACGTGTCCA
CTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCATCTTTC
TGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGAGGAGGA
AAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATACAGCTAC
AGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATCAAGGCC
AAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGTGAGGGG
GCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCAAACGTA
TATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTCTCCATA
AGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGCCAAGAT
ACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGGCGAAAG
CCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCCGAGGTG
GAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAACAGTGAA
GGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGGTGGAAA
GGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTGGAGAAG
AGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTACCCAAGC
GGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCGGGACGA
ACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAGGGTGGG
AGGCCGAGGGTTTTGTAAGAAAGGCGAAATATTAGGGGGGTATTTGTACA
TATTAGAAGTAAAGTACAACAGAAAAACCGAAGGAATACATTAATAAGAC
TG back to topCoding sequence (CDS) from alignment at chr8:756736..758737- >NO08G02700.1 ID=NO08G02700.1|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr8:756736..758737- (Nannochloropsis oceanica) ATGCCTGATATACGGCCGTTGGCCGCCTCGCCCCCTTTTGCCGAGACTCC ACGCCATGCACAAACAACCGTGCCATCCTTATCACCACAGCGCAATCACA ACATGCATGAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAA GTGCTGCAAGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGT CGATGAGCTTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCC TGCTCAGTGCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCA TCCTCTACTGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAA CGCTGCAGAAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACC TCTATCTGCTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAG AGCTGGTTAGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGT GGAAGCACGGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTG CGCATGCATTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGG GGCGCATGCCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGG AGTGGTGCAGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAG CAGATAGCCCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAA GACCAGTTGGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAA TCGGCTGCAAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTA CCAGCAGCAACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATG CGTAGCTTGAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGA CGTGTCCACTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCT CATCTTTCTGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAA GAGGAGGAAAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGAT ACAGCTACAGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACA TCAAGGCCAAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAG GTGAGGGGGCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGC CAAACGTATATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAAC TCTCCATAAGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACA GCCAAGATACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGA GGCGAAAGCCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTG CCGAGGTGGAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAA ACAGTGAAGGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGA GGTGGAAAGGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGC TGGAGAAGAGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATT ACCCAAGCGGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGC CGGGACGAACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAG AGGGTGGGAGGCCGAGGGTTTTGTAA back to top
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