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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:737339..740123 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02630.1 vs.
Match: EWM26637.1 (protein mam3 [Nannochloropsis gaditana]) HSP 1 Score: 774.2 bits (1998), Expect = 2.900e-220 Identity = 429/570 (75.26%), Postives = 468/570 (82.11%), Query Frame = 0
Query: 43 MDFGEDASGYANMDAANFWYQLVGAVVCVLCAAFAAGLTVGLMSLDPLELEVKRRVGTPDERKHAEKICPLIARHHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVLLSVTAILIFGEIIPSALFTGPNQIVMAARFSGCVLFLMGLFWPIAYPIAHVLDRWLGHNSFKRYTREELSTLVDLQREAGTIKHRRPPGTPGGGVGTGIYAHSAKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMDEVYTLCEDDVLDENMLCEIMACGFSRIPVHSARGRQDIRGFLLVKRLIVLDPADRRPVRTLPLRQPIVVGPTGSLLELINVFQEGRSHMAIVSSCPDLTRQALRTGKPLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETLKRVRRKVRRLRQQQQEELESGHHKA------ISVASSTSSG-LSNQSPTSSP-TSTLSGSALSPTTTAAFLLLNSGVPNSSSALGEAHTAPASDDPTTTLLSSRPKSNIIQPSSSKKTNGGNITGSSSRNSKKKTTKRQQAGSSTLGNGNVKGHGQPPSSYGSTDATDSPV 605
MDFG+D +GYA+M WYQL GAVVCV+CAAFAAGLTVGLMSLDPLELEVKRRVGTP+ERKHAEKICPLIA HHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVLLSVTAILIFGEIIPSA+FTGPNQI+MAA FSG V FLMG+FWPIAYPI VLD+WLGHNSFKRYTREELSTLVDLQRE G +KHRRPPG+ G G G +AKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMD VYTLCE+D+LDEN LCEIMACG+SRIPVHSARGRQDIRGFLLVKRLIVLDPADRRPVRTLPLRQPIVV PTGSLLELINVFQEGRSHMAIVS CPDLTRQALR+ KPLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETL+RVRRKVRRL QQQQ + + +A +S +SSTSS L NQSP SSP +ST+S LSPTTTA FLLLNS P+ P+ +DP+T LLS PK++ KT + ++ R + ++ + SST+ NG VK Q P+SYGSTD DS V
Sbjct: 1 MDFGDDNAGYADMRDIGSWYQLGGAVVCVICAAFAAGLTVGLMSLDPLELEVKRRVGTPEERKHAEKICPLIAPHHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVLLSVTAILIFGEIIPSAIFTGPNQIIMAAHFSGFVYFLMGVFWPIAYPIGKVLDKWLGHNSFKRYTREELSTLVDLQREVGVVKHRRPPGSHSGSGGGGGTLKAAKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMDVVYTLCEEDILDENKLCEIMACGYSRIPVHSARGRQDIRGFLLVKRLIVLDPADRRPVRTLPLRQPIVVSPTGSLLELINVFQEGRSHMAIVSPCPDLTRQALRSNKPLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETLRRVRRKVRRLHQQQQHKQQGPQQQAFSGSGHLSASSSTSSSVLMNQSPDSSPASSTMSSGGLSPTTTATFLLLNSDTPSLLPVSHRVSACPSQNDPSTGLLSGGPKNDSTHIPGDGKT---EMKSATRRKKNGEHKEKPFSCSSTIANGLVK--MQSPTSYGSTDMGDSLV 565
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02630.1 ID=NO08G02630.1|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp ATGCTCGGAGGCAAGGAGCGCGAGAGCGGGGGGCCTCCGAGTCTGCAATC GCTCAGAACGAGGGCAGCAGCAGAGGCAAGGCCCGCTACTTCACACCTCA ACACTGTAGCAACGGCGGCGGCCGGAATGGATTTCGGGGAAGATGCATCC GGATATGCAAACATGGATGCGGCAAACTTTTGGTATCAACTGGTCGGGGC CGTGGTCTGCGTACTGTGCGCAGCTTTTGCCGCAGGCCTCACGGTGGGGC TCATGTCGCTGGACCCTTTGGAGCTGGAGGTGAAGCGGCGGGTTGGTACG CCAGATGAACGAAAACACGCTGAGAAAATTTGTCCACTTATTGCGCGGCA CCATCGTCTGCTTGTGACCCTCCTGCTATTTAATTCCATCGCCAACGAAG CCCTCCCCATCTTCTTGTCGGGACTGGTGCCTGGTTACGTCGCTGTGCTT CTTTCCGTCACGGCCATCCTCATTTTTGGTGAGATCATCCCCTCAGCGCT CTTTACGGGGCCGAACCAAATCGTAATGGCCGCGCGCTTCTCGGGCTGTG TCCTTTTCCTGATGGGGCTCTTCTGGCCCATCGCCTACCCGATTGCCCAC GTCCTAGACAGGTGGCTGGGGCACAATTCCTTCAAGCGCTACACGCGAGA GGAGCTCTCGACGTTGGTAGACCTGCAGCGGGAAGCGGGCACGATCAAGC ACAGACGGCCACCGGGGACTCCGGGTGGAGGGGTAGGGACCGGAATTTAC GCCCATTCGGCGAAGGAGAAAGAGCTCGGAGAGAGCATGCGGGCCATCAC CGTTGACGAGGCGACGATCGTGGCAGGTGTGCTGAAGTGCCATGCGAAGA AGATTTGTGACGCCTTGAAACCGATGGATGAGGTGTACACTCTTTGTGAA GATGATGTGCTGGACGAAAACATGCTCTGCGAGATCATGGCCTGTGGCTT CTCCCGCATTCCCGTGCACAGCGCGCGAGGCAGGCAAGATATCCGCGGCT TCCTTCTGGTCAAGCGTCTAATTGTACTAGATCCCGCCGACCGCCGCCCC GTTCGCACCTTGCCGTTGCGCCAGCCTATCGTGGTGGGCCCCACCGGGTC GCTGCTTGAGCTGATTAATGTCTTCCAGGAGGGCAGGAGCCACATGGCTA TCGTTTCATCATGTCCTGATTTGACAAGACAGGCCCTTCGGACGGGCAAG CCGCTGGAAGGACGGATCGCACCGATTGGAATCATAACGCTGGAGGACTT GTTCGAAGAAATTCTGCAGGAGGAGATTTATGACGAGCATGACGACCGGG AACGAAAAGCCATCGAGACTCTCAAACGTGTGCGACGGAAGGTTCGCCGC CTCCGACAGCAACAGCAGGAAGAATTGGAAAGCGGACATCATAAAGCGAT CAGCGTCGCCAGTAGTACCAGCAGCGGCCTCTCCAACCAGTCGCCCACTT CCTCTCCAACCTCGACACTTTCCGGTAGCGCACTCTCCCCCACCACCACT GCTGCATTCCTTCTCCTCAACAGTGGCGTGCCCAACTCTTCCTCCGCCTT GGGCGAGGCACACACCGCCCCTGCTTCGGACGACCCCACCACTACCCTTC TTTCGAGCAGGCCAAAAAGTAATATAATACAGCCATCATCGAGTAAGAAG ACAAATGGCGGTAACATCACCGGCAGCAGTAGTAGGAACAGTAAGAAAAA GACGACGAAGCGACAGCAGGCCGGGTCGTCTACGCTGGGTAACGGCAACG TCAAGGGGCATGGCCAGCCACCTTCTTCCTACGGTAGTACAGATGCCACT GACTCGCCTGTGTAG back to topprotein sequence of NO08G02630.1 >NO08G02630.1-protein ID=NO08G02630.1-protein|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp MLGGKERESGGPPSLQSLRTRAAAEARPATSHLNTVATAAAGMDFGEDAS GYANMDAANFWYQLVGAVVCVLCAAFAAGLTVGLMSLDPLELEVKRRVGT PDERKHAEKICPLIARHHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVL LSVTAILIFGEIIPSALFTGPNQIVMAARFSGCVLFLMGLFWPIAYPIAH VLDRWLGHNSFKRYTREELSTLVDLQREAGTIKHRRPPGTPGGGVGTGIY AHSAKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMDEVYTLCE DDVLDENMLCEIMACGFSRIPVHSARGRQDIRGFLLVKRLIVLDPADRRP VRTLPLRQPIVVGPTGSLLELINVFQEGRSHMAIVSSCPDLTRQALRTGK PLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETLKRVRRKVRR LRQQQQEELESGHHKAISVASSTSSGLSNQSPTSSPTSTLSGSALSPTTT AAFLLLNSGVPNSSSALGEAHTAPASDDPTTTLLSSRPKSNIIQPSSSKK TNGGNITGSSSRNSKKKTTKRQQAGSSTLGNGNVKGHGQPPSSYGSTDAT DSPV* back to topmRNA from alignment at chr8:737339..740123+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02630.1 ID=NO08G02630.1|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2785bp|location=Sequence derived from alignment at chr8:737339..740123+ (Nannochloropsis oceanica) ATGCTCGGAGGCAAGGAGCGCGAGAGCGGGGGGCCTCCGAGTCTGCAATC
GCTCAGAACGAGGGTCGAGTTTTGACGCACGCATTTGCTGTCAATTTTCC
CGAGCATGCATTTCAGGACAGCAAGTACTCGCATAAATCTTGGCCCTCTT
CGCTCAGGTCGTGGCCCTGGCTGTCACGCATGCGCGCTTGTGCTGCTGGA
GGAGCAACATCACCTCCTTCTTCGGCTTGCCTTGACTCCTTATCACCACT
TCATCGCACCACTAAAACAGTGAAAAGAGCCAAGGGCGCCGGTGGCAGTG
GGGGGGAAGCACGCACACACTCCCGACGCTATCGCTAGGCAGCAGCAGAG
GCAAGGTACGTGTCCTGGACAGGTGTGGGGTGTGGTGGACTGGATAACTA
GTCCTCTTCCCCGCCCTCGTTGAAGTGTTCACATGTGAACTGACATGCAC
ACCGACTGGATTCACTCCAGTCGCATGCATCATGCACGGTCTCGGCAGGA
CGGCATGTGCGTTCGCTTTTGTTTCAAATGCTTTTTATGGAATAAGTGCA
TGTGTCTCTCTGTCTCTCTGTCTCTCAGTCTATGTCTGAGTCTCTGTCTG
TGTCTCCATGTCTCCGTCCGGGTCTCTGTGTCTCTGTTTCTTTTTGCGTG
TGAGGCTGTCTGGATGTGTTTGCGTCCGAGTGTAAGTGTGTGTGTTGTAT
CTGTGCGTATTTTTGTCTGTGTCTGTGTCTGTGTGTGTATCTGTGTGTCT
GTCTGAATATGTGTCTCGGTGCATCTGTAGGTGCATATAATTGTGCGTGG
CTACTGGACTTGCACCCACAGCTGGCTCGCAGCCAACCACTCAAATGCAT
TCTGCAAGTTGCCACAGATCTCACTGGCTCCACATTCTTTGCACACAGGC
CCGCTACTTCACACCTCAACACTGTAGCAACGGCGGCGGCCGGAATGGAT
TTCGGGGAAGATGCATCCGGATATGCAAACATGGATGCGGCAAACTTTTG
GTATCAACTGGTCGGGGCCGTGGTCTGCGTACTGTGCGCAGCTTTTGCCG
CAGGCCTCACGGTGGGGCTCATGTCGCTGGACCCTTTGGAGCTGGAGGTG
AAGCGGCGGGTTGGTACGCCAGATGAACGAAAACACGCTGAGAAAATTTG
TCCACTTATTGCGCGGCACCATCGTCTGCTTGTGACCCTCCTGCTATTTA
ATTCCATCGCCAACGAAGCCCTCCCCATCTTCTTGTCGGGACTGGTGCCT
GGTTACGTCGCTGTGCTTCTTTCCGTCACGGCCATCCTCATTTTTGGTGA
GATCATCCCCTCAGCGCTCTTTACGGGGCCGAACCAAATCGTAATGGCCG
CGCGCTTCTCGGGCTGTGTCCTTTTCCTGATGGGGCTCTTCTGGCCCATC
GCCTACCCGATTGCCCACGTCCTAGACAGGTGGCTGGGGCACAATTCCTT
CAAGCGCTACACGCGAGAGGAGCTCTCGACGTTGGTAGACCTGCAGCGGG
AAGCGGGCACGATCAAGCACAGACGGCCACCGGGGACTCCGGGTGGAGGG
GTAGGGACCGGAATTTACGCCCATTCGGCGAAGGAGAAAGAGCTCGGAGA
GAGCATGCGGGCCATCACCGTTGACGAGGCGACGATCGTGGCAGGTGTGC
TGAAGTGCCATGCGAAGAAGATTTGTGACGCCTTGAAACCGATGGATGAG
GTGTACACTCTTTGTGAAGATGATGTGCTGGACGAAAACATGCTCTGCGA
GATCATGGCCTGTGGCTTCTCCCGCATTCCCGTGCACAGCGCGCGAGGCA
GGCAAGATATCCGCGGCTTCCTTCTGGTCAAGCGTCTAATTGTACTAGAT
CCCGCCGACCGCCGCCCCGTTCGCACCTTGCCGTTGCGCCAGCCTATCGT
GGTGGGCCCCACCGGGTCGCTGCTTGAGCTGATTAATGTCTTCCAGGAGG
GCAGGAGCCACATGGCTATCGTTTCATCATGTCCTGATTTGACAAGACAG
GCCCTTCGGACGGGCAAGCCGCTGGAAGGACGGATCGCACCGATTGGAAT
CATAACGCTGGAGGACTTGTTCGAAGAAATTCTGCAGGAGGAGATTTATG
ACGAGCATGACGACCGGGTATGTGGATTTTTTGTGCTTGCTGGGATGACC
CTTTCTTCTCCTTTTCATGCTGTCCCCCTGTTTCCCCCCCCCCCCTTTTT
AAAGATATTGCATTGAATCGCCCAGTCTTTGATTCCTTTCTTTTTTTAAT
ATTTTCTCGACTACTCTAGGAACGAAAAGCCATCGAGACTCTCAAACGTG
TGCGACGGAAGGTTCGCCGCCTCCGACAGCAACAGCAGGAAGAATTGGAA
AGCGGACATCATAAAGCGATCAGCGTCGCCAGTAGTACCAGCAGCGGCCT
CTCCAACCAGTCGCCCACTTCCTCTCCAACCTCGACACTTTCCGGTAGCG
CACTCTCCCCCACCACCACTGCTGCATTCCTTCTCCTCAACAGTGGCGTG
CCCAACTCTTCCTCCGCCTTGGGCGAGGCACACACCGCCCCTGCTTCGGA
CGACCCCACCACTACCCTTCTTTCGAGCAGGCCAAAAAGTAATATAATAC
AGCCATCATCGAGTAAGAAGACAAATGGCGGTAACATCACCGGCAGCAGT
AGTAGGAACAGTAAGAAAAAGACGACGAAGCGACAGCAGGCCGGGTCGTC
TACGCTGGGTAACGGCAACGTCAAGGGGCATGGCCAGCCACCTTCTTCCT
ACGGTAGTACAGATGCCACTGACTCGCCTGTGTAG back to topCoding sequence (CDS) from alignment at chr8:737339..740123+ >NO08G02630.1 ID=NO08G02630.1|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=1815bp|location=Sequence derived from alignment at chr8:737339..740123+ (Nannochloropsis oceanica) ATGCTCGGAGGCAAGGAGCGCGAGAGCGGGGGGCCTCCGAGTCTGCAATC GCTCAGAACGAGGGCAGCAGCAGAGGCAAGGCCCGCTACTTCACACCTCA ACACTGTAGCAACGGCGGCGGCCGGAATGGATTTCGGGGAAGATGCATCC GGATATGCAAACATGGATGCGGCAAACTTTTGGTATCAACTGGTCGGGGC CGTGGTCTGCGTACTGTGCGCAGCTTTTGCCGCAGGCCTCACGGTGGGGC TCATGTCGCTGGACCCTTTGGAGCTGGAGGTGAAGCGGCGGGTTGGTACG CCAGATGAACGAAAACACGCTGAGAAAATTTGTCCACTTATTGCGCGGCA CCATCGTCTGCTTGTGACCCTCCTGCTATTTAATTCCATCGCCAACGAAG CCCTCCCCATCTTCTTGTCGGGACTGGTGCCTGGTTACGTCGCTGTGCTT CTTTCCGTCACGGCCATCCTCATTTTTGGTGAGATCATCCCCTCAGCGCT CTTTACGGGGCCGAACCAAATCGTAATGGCCGCGCGCTTCTCGGGCTGTG TCCTTTTCCTGATGGGGCTCTTCTGGCCCATCGCCTACCCGATTGCCCAC GTCCTAGACAGGTGGCTGGGGCACAATTCCTTCAAGCGCTACACGCGAGA GGAGCTCTCGACGTTGGTAGACCTGCAGCGGGAAGCGGGCACGATCAAGC ACAGACGGCCACCGGGGACTCCGGGTGGAGGGGTAGGGACCGGAATTTAC GCCCATTCGGCGAAGGAGAAAGAGCTCGGAGAGAGCATGCGGGCCATCAC CGTTGACGAGGCGACGATCGTGGCAGGTGTGCTGAAGTGCCATGCGAAGA AGATTTGTGACGCCTTGAAACCGATGGATGAGGTGTACACTCTTTGTGAA GATGATGTGCTGGACGAAAACATGCTCTGCGAGATCATGGCCTGTGGCTT CTCCCGCATTCCCGTGCACAGCGCGCGAGGCAGGCAAGATATCCGCGGCT TCCTTCTGGTCAAGCGTCTAATTGTACTAGATCCCGCCGACCGCCGCCCC GTTCGCACCTTGCCGTTGCGCCAGCCTATCGTGGTGGGCCCCACCGGGTC GCTGCTTGAGCTGATTAATGTCTTCCAGGAGGGCAGGAGCCACATGGCTA TCGTTTCATCATGTCCTGATTTGACAAGACAGGCCCTTCGGACGGGCAAG CCGCTGGAAGGACGGATCGCACCGATTGGAATCATAACGCTGGAGGACTT GTTCGAAGAAATTCTGCAGGAGGAGATTTATGACGAGCATGACGACCGGG AACGAAAAGCCATCGAGACTCTCAAACGTGTGCGACGGAAGGTTCGCCGC CTCCGACAGCAACAGCAGGAAGAATTGGAAAGCGGACATCATAAAGCGAT CAGCGTCGCCAGTAGTACCAGCAGCGGCCTCTCCAACCAGTCGCCCACTT CCTCTCCAACCTCGACACTTTCCGGTAGCGCACTCTCCCCCACCACCACT GCTGCATTCCTTCTCCTCAACAGTGGCGTGCCCAACTCTTCCTCCGCCTT GGGCGAGGCACACACCGCCCCTGCTTCGGACGACCCCACCACTACCCTTC TTTCGAGCAGGCCAAAAAGTAATATAATACAGCCATCATCGAGTAAGAAG ACAAATGGCGGTAACATCACCGGCAGCAGTAGTAGGAACAGTAAGAAAAA GACGACGAAGCGACAGCAGGCCGGGTCGTCTACGCTGGGTAACGGCAACG TCAAGGGGCATGGCCAGCCACCTTCTTCCTACGGTAGTACAGATGCCACT GACTCGCCTGTGTAG back to top
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