NO08G02420.5, NO08G02420.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02420.5
Unique NameNO08G02420.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3772
Alignment locationchr8:703729..707822 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:703729..707822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02420.5 vs.
Match: EWM26726.1 (sco1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 243.4 bits (620), Expect = 5.400e-61
Identity = 113/136 (83.09%), Postives = 122/136 (89.71%), Query Frame = 0 
Query:   15 SKSTLKPVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDFTGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHP 151
            ++S   PVTW  L +MAVTG GLAY+YQ EKE+ QQQALGKVTSYGKPALGGPWTLVDFTG+PVTDADFRGEFLLLYFGFTHCPDICPSELVKVG+ILD LD+EP LP+VRPVFISVDPDRDNVGQLRHYAQ   P
Sbjct:   60 ARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALP 195
The following BLAST results are available for this feature:
BLAST of NO08G02420.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26726.15.400e-6183.09sco1 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02420NO08G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02420.5NO08G02420.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02420.5.cds1NO08G02420.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02420.5.cds2NO08G02420.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02420.5.cds3NO08G02420.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02420.5 ID=NO08G02420.5|Name=NO08G02420.5|organism=Nannochloropsis oceanica|type=mRNA|length=3772bp
TCCGGACTAATTTGTTTTAGGGGTTCTGCGTGTGCCTCCTTCACACAGGC
ACCCGATCCGCCCATCCATAAAGTGATGGACTGACAGACAGAGGGACTGA
CTAATCGTATCAAGTAAAGGCGGGGAGACAGCCACTTCCCGACAGAGGCC
CAGACATTAAATGGTTGATGACAGACACATTTTTACTCGATCGATCCTGA
TTTTCGCTAATCAACAAAATTTACAGACAAAATAGGAAGTGGGAGATTGA
CGTGGATGCCTGTGATTAGTTTTCCCACTTGCTCAGTAGTTAGTGGACGG
CAAGGCAGTAAACTGCGCGACTTAACACTGCTTCACTTTTGCATCGTCGC
AGCAGGAGGGAGGATTTATCTCTTAATGTCTTTCTATCTATCCAAAAAAT
GCATCAGATCGGAGCGGAGGGCGTCCGCGACCGCCGTGGCAACCATGGAA
AAAATATGCGTCACGAGCACGAGTTCAGGGAAGTAGGCACTCGGGCATCC
GAAGAATTAGATGATGGTGTGGAACGTGTAGGGACATAAAACTTGCTTCG
CTCCACAAAGAGGAGGATGATTGTGTCCATGCTCACAACTGTGACGAGTA
CCTCCCTCTGCTTCCCACCTAGGTCCCGCACGGTCTGTGGGCGGTTCAGG
AACGATTGCGGCATCCCTAAACCCCCCAAGAATGAACTTATTTCCTCCGT
CTGGTCCACCTCGAAGGTCAAGGTGCCGAAGACCCGGTCGCTCTCCGAGG
GTTGCTTACCAAAGCCACCGGGTGACATTCGGCTTGTCTCCTCGCGGGTG
GTGATGGAGCTGACGGTGCTTGCTGCCATCGTGATCGCTTCAGAAGGGGA
AAATGAAGACGCAATCGCTTGCAAAGAGAAGGATCCATTTCGTAAAACTT
TAACAGTCGACCATGAGGCCCTAATCGTTCTTGCGATGCCCCGTCGCGTG
GAAGAATCTTCATCAATCTCCACCCTTCAAAAAACAGCCTAGTTCGTCGC
TCAGCTCGTTGCTTGCCTTGAATTCCCAGCGGTCTAAGCTGAAATTCATG
GAGGTATCTATCAAATGAGGAGAAGCAGATGAAATATCAAGAGTCTGGTG
AACACTGCCAAAAGAAAGAGAGGGCGTGGCGGAGGGAGGGAGGCCAGATG
CATGGATGCAAGTGGAAAAATATTCACTCCCATCACATGCCGTGAATGAG
GACGGAGACATCTCAAGTGGGTTCTTACAACAATCACGCATCATCGAGGA
CGGGTCGAGATGATCTCGACCCGTCCTCGAATACGTGGGACATACCTGAT
ACAGTGCTAGCGCCGTCGGATCCAAAGGCAGCAACGACGAGGAATATGTG
GTGAAGGAGATGGAAGACGACGTGGAGGAGGAAGAAGAATTCATAGCTGA
CACAAAATGAGTAATTTGGGGAGCTTCGTTACCGTAAATACCAAATCAGG
CTGCTGAGGAGCAGGTCAGGACTGATATCTTCGAATGGTGGAGGAAGGCG
TCGGAGGCCGGCATCCTCTGCAGCCAGGTGAGGATAAGAAGTAGCATTAC
TGTGTATTTGTAGAGAATGAGGAAGGAAGAAGTGTGAGGAAAGGTTGTAA
GTAAAGAAAGTACAGATTGCCCCCTATTATTTCCCACACATCCGGGAGCC
TGGGGTACGTATGTGTCTAATGAGCCCGAGACATGTGTCGTTGAGATGAG
GGAAGCAAGCAAGGGCAGTACCCTAACATCCCCGAGGCCTTTCGTGCACT
CAATCCTTTTTTGGACACGTTCGGACGATGCCGCTTGGCACGAGGCGAAC
GCGTCAAAAGAATAACGGCCCCTGTGCGCACGCGCGGGCGTAAAACAGTA
GTTAACGCAACGCGACGAAGCAACTTTAGCGCCGGGCTTCGAGGTTCCCC
AAGTGAGCACTTACCGAGTCCGTATGTGAGCACCGGCCGCGTCACAATTA
GCCTTTGACGTCTCACCTTTCGTCAATCGAGCAATCAATTTCCTCTGAGA
GTTTTCGCGAAGCACGGGCGCGTAGCGCTATAGCTGTAGTCTATTATCAT
GATGCGTCACATGCATGTTCACATATTATTTGGCGTTGGCGTGGCATGTT
TGGCTCAGAGATCTGATAAGACACTTTTGCCGCAGCAGTCAGACACTGTA
CCGTGCATAGCATCACATCCTCATGGTCAGGGCACTCATATTGTACAGAT
TTGAAACATCTCGGGGCTTGTGCGGCTCTGGCACCTGTCTTGACCAGTCT
CGTCGCTGCCGACTGACTCCACCTCCTCTCCTCCCTCTTCGTCCTTGCTT
GTCAGAGTCTACCTCAAGCACCCCATTCACCCCATTCACAGGCAATCATG
AATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAATCTTTCCCTCGCT
CTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCACGCCGCCCCATGA
CTACCATTAAGGCACCGCCAGACGCCGCCATCAAAACCGCAGCATCATCT
CCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCAAGATTGATAAAAT
GGTAAGTTTGGGTTTGGAGGTTGTAAAATGCCGCGAACTCATCATATAGC
ACCCGCCCCACCTCACGCCGGGATGCACAGCAAAGGTACCAGAGAGACAA
GAGAAGTTTGGGCGACAAAGAGTGGCACATTACCTGGTGATCTAACCCCG
TCAGTGCCCCCTTAAGTGAAGAGGCTTTTTTGGAGGGGGAAGGATGGCAA
CATGCAATACTCTGCGCTTCAGATGAGGAGCGAGTATATACCAGTTTGTA
CCTCTGCCTCTGCCCCTCCTCTATTTTCATCATTATACTGTAACGGGTCG
AAAATTAAATGGAAACCTCGCTGCAATCAACTCACCATCCCATCCCACTC
TCAAAATCTACTCTCAAGCCTGTAACGTGGGCGAGCCTGGGCCTCATGGC
GGTGACGGGCGCTGGCCTCGCGTACTACTACCAAGGCGAGAAGGAGAAGA
AGCAGCAACAAGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCACTC
GGCGGGCCTTGGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGACGC
GGACTTCCGCGGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACTGCC
CTGACATCTGCCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACCTG
CTTGACAAGGAGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCCGT
TGATCCCGACCGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAGACT
TTCACCCGCGTATCTTGTATTTGACGGGCACGCAGGAGCAGCTGGCTAAG
GTGACCAAAGGTTACCGAGTCTACTTCAGCAAGGTACGTGAAAGGCCGTT
ACAAAGATAGGAAAGCTTGTTGATGGATTTATAAATTAGTCCCGTGTTCC
ACCTGTCATCGCCTTGATACCACTGCGCAGGCGGACGAGGAGGACGAGGA
GAATTACCTGGTAGATCACTCCATCGTGTTGTACCTCATCGGGCCCGATG
GCTCCTTCCTGGATTTCTTCACGCAGTCCATGCAACCTACCGATATTGTG
AACCGTATTAAGGGCTATCTTGGCCAAGCAAGGCGGGTTGATACGTAAGA
CGCATACACACATATGAAGAATCGAAAAAATGAGCGCCATGGCGAAATCG
ATGAGTCAATAGCTTGAAGTGTGTGAAATAGGGCACGAAATAAACATCGA
ATATCCGTTTCCTCTTCTCAAG
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protein sequence of NO08G02420.5

>NO08G02420.5-protein ID=NO08G02420.5-protein|Name=NO08G02420.5|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
METSLQSTHHPIPLSKSTLKPVTWASLGLMAVTGAGLAYYYQGEKEKKQQ
QALGKVTSYGKPALGGPWTLVDFTGKPVTDADFRGEFLLLYFGFTHCPDI
CPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHP
RILYLTGTQEQLAKVTKGYRVYFSKVRERPLQR*
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mRNA from alignment at chr8:703729..707822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02420.5 ID=NO08G02420.5|Name=NO08G02420.5|organism=Nannochloropsis oceanica|type=mRNA|length=4094bp|location=Sequence derived from alignment at chr8:703729..707822- (Nannochloropsis oceanica)
TCCGGACTAATTTGTTTTAGGGGTTCTGCGTGTGCCTCCTTCACACAGGC
ACCCGATCCGCCCATCCATAAAGTGATGGACTGACAGACAGAGGGACTGA
CTAATCGTATCAAGTAAAGGCGGGGAGACAGCCACTTCCCGACAGAGGCC
CAGACATTAAATGGTTGATGACAGACACATTTTTACTCGATCGATCCTGA
TTTTCGCTAATCAACAAAATTTACAGACAAAATAGGAAGTGGGAGATTGA
CGTGGATGCCTGTGATTAGTTTTCCCACTTGCTCAGTAGTTAGTGGACGG
CAAGGCAGTAAACTGCGCGACTTAACACTGCTTCACTTTTGCATCGTCGC
AGCAGGAGGGAGGATTTATCTCTTAATGTCTTTCTATCTATCCAAAAAAT
GCATCAGATCGGAGCGGAGGGCGTCCGCGACCGCCGTGGCAACCATGGAA
AAAATATGCGTCACGAGCACGAGTTCAGGGAAGTAGGCACTCGGGCATCC
GAAGAATTAGATGATGGTGTGGAACGTGTAGGGACATAAAACTTGCTTCG
CTCCACAAAGAGGAGGATGATTGTGTCCATGCTCACAACTGTGACGAGTA
CCTCCCTCTGCTTCCCACCTAGGTCCCGCACGGTCTGTGGGCGGTTCAGG
AACGATTGCGGCATCCCTAAACCCCCCAAGAATGAACTTATTTCCTCCGT
CTGGTCCACCTCGAAGGTCAAGGTGCCGAAGACCCGGTCGCTCTCCGAGG
GTTGCTTACCAAAGCCACCGGGTGACATTCGGCTTGTCTCCTCGCGGGTG
GTGATGGAGCTGACGGTGCTTGCTGCCATCGTGATCGCTTCAGAAGGGGA
AAATGAAGACGCAATCGCTTGCAAAGAGAAGGATCCATTTCGTAAAACTT
TAACAGTCGACCATGAGGCCCTAATCGTTCTTGCGATGCCCCGTCGCGTG
GAAGAATCTTCATCAATCTCCACCCTTCAAAAAACAGCCTAGTTCGTCGC
TCAGCTCGTTGCTTGCCTTGAATTCCCAGCGGTCTAAGCTGAAATTCATG
GAGGTATCTATCAAATGAGGAGAAGCAGATGAAATATCAAGAGTCTGGTG
AACACTGCCAAAAGAAAGAGAGGGCGTGGCGGAGGGAGGGAGGCCAGATG
CATGGATGCAAGTGGAAAAATATTCACTCCCATCACATGCCGTGAATGAG
GACGGAGACATCTCAAGTGGGTTCTTACAACAATCACGCATCATCGAGGA
CGGGTCGAGATGATCTCGACCCGTCCTCGAATACGTGGGACATACCTGAT
ACAGTGCTAGCGCCGTCGGATCCAAAGGCAGCAACGACGAGGAATATGTG
GTGAAGGAGATGGAAGACGACGTGGAGGAGGAAGAAGAATTCATAGCTGA
CACAAAATGAGTAATTTGGGGAGCTTCGTTACCGTAAATACCAAATCAGG
CTGCTGAGGAGCAGGTCAGGACTGATATCTTCGAATGGTGGAGGAAGGCG
TCGGAGGCCGGCATCCTCTGCAGCCAGGTGAGGATAAGAAGTAGCATTAC
TGTGTATTTGTAGAGAATGAGGAAGGAAGAAGTGTGAGGAAAGGTTGTAA
GTAAAGAAAGTACAGATTGCCCCCTATTATTTCCCACACATCCGGGAGCC
TGGGGTACGTATGTGTCTAATGAGCCCGAGACATGTGTCGTTGAGATGAG
GGAAGCAAGCAAGGGCAGTACCCTAACATCCCCGAGGCCTTTCGTGCACT
CAATCCTTTTTTGGACACGTTCGGACGATGCCGCTTGGCACGAGGCGAAC
GCGTCAAAAGAATAACGGCCCCTGTGCGCACGCGCGGGCGTAAAACAGTA
GTTAACGCAACGCGACGAAGCAACTTTAGCGCCGGGCTTCGAGGTTCCCC
AAGTGAGCACTTACCGAGTCCGTATGTGAGCACCGGCCGCGTCACAATTA
GCCTTTGACGTCTCACCTTTCGTCAATCGAGCAATCAATTTCCTCTGAGA
GTTTTCGCGAAGCACGGGCGCGTAGCGCTATAGCTGTAGTCTATTATCAT
GATGCGTCACATGCATGTTCACATATTATTTGGCGTTGGCGTGGCATGTT
TGGCTCAGAGATCTGATAAGACACTTTTGCCGCAGCAGTCAGACACTGTA
CCGTGCATAGCATCACATCCTCATGGTCAGGGCACTCATATTGTACAGAT
TTGAAACATCTCGGGGCTTGTGCGGCTCTGGCACCTGTCTTGACCAGTCT
CGTCGCTGCCGACTGACTCCACCTCCTCTCCTCCCTCTTCGTCCTTGCTT
GTCAGAGTCTACCTCAAGCACCCCATTCACCCCATTCACAGGCAATCATG
AATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAATCTTTCCCTCGCT
CTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCACGCCGCCCCATGA
CTACCATTAAGGCACCGCCAGACGCCGCCATCAAAACCGCAGCATCATCT
CCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCAAGATTGATAAAAT
GGTAAGTTTGGGTTTGGAGGTTGTAAAATGCCGCGAACTCATCATATAGC
ACCCGCCCCACCTCACGCCGGGATGCACAGCAAAGGTACCAGAGAGACAA
GAGAAGTTTGGGCGACAAAGAGTGGCACATTACCTGGTGATCTAACCCCG
TCAGTGCCCCCTTAAGTGAAGAGGCTTTTTTGGAGGGGGAAGGATGGCAA
CATGCAATACTCTGCGCTTCAGATGAGGAGCGAGTATATACCAGTTTGTA
CCTCTGCCTCTGCCCCTCCTCTATTTTCATCATTATACTGTAACGGGTCG
AAAATTAAATGGAAACCTCGCTGCAATCAACTCACCATCCCATCCCACTC
TCAAAATCTACTCTCAAGCCTGTAACGTGGGCGAGCCTGGGCCTCATGGC
GGTGACGGGCGCTGGCCTCGCGTACTACTACCAAGGCGAGAAGGAGAAGA
AGCAGCAACAAGGTATCCTAGTCGTGTCGCGTTCATCTCTTTCTTTTCCT
TGGAAGCATTTTCTCTGTTTCTATCATTTTTCTCTCTCTTTCGCACACGG
CATTCACGCTCTTCCTTCGCTTTCTTCTGGTCCCTCCCTCCTCTTTACTC
CACAAACTACTCAGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCAC
TCGGCGGGCCTTGGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGAC
GCGGACTTCCGCGGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACTG
CCCTGACATCTGCCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACC
TGCTTGACAAGGAGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCC
GTTGATCCCGACCGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAGG
TGCGTTGTCTTGGGTGGTGAAAAAGCAGCGGGGTGAGGGGGATTAAGGGA
TAGGGAAGAGATGCGATGCCGAGTGACAGTGAATGGAAAGCAGCGCACTC
TTACTGCTGTCTGTAGTTACGAGCAGCACTCTGACCGAATTTCTCTCTCG
CTCCTCTTACGCCCACTAGACTTTCACCCGCGTATCTTGTATTTGACGGG
CACGCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTACCGAGTCTACTTCA
GCAAGGTACGTGAAAGGCCGTTACAAAGATAGGAAAGCTTGTTGATGGAT
TTATAAATTAGTCCCGTGTTCCACCTGTCATCGCCTTGATACCACTGCGC
AGGCGGACGAGGAGGACGAGGAGAATTACCTGGTAGATCACTCCATCGTG
TTGTACCTCATCGGGCCCGATGGCTCCTTCCTGGATTTCTTCACGCAGTC
CATGCAACCTACCGATATTGTGAACCGTATTAAGGGCTATCTTGGCCAAG
CAAGGCGGGTTGATACGTAAGACGCATACACACATATGAAGAATCGAAAA
AATGAGCGCCATGGCGAAATCGATGAGTCAATAGCTTGAAGTGTGTGAAA
TAGGGCACGAAATAAACATCGAATATCCGTTTCCTCTTCTCAAG
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Coding sequence (CDS) from alignment at chr8:703729..707822-

>NO08G02420.5 ID=NO08G02420.5|Name=NO08G02420.5|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr8:703729..707822- (Nannochloropsis oceanica)
ATGGAAACCTCGCTGCAATCAACTCACCATCCCATCCCACTCTCAAAATC
TACTCTCAAGCCTGTAACGTGGGCGAGCCTGGGCCTCATGGCGGTGACGG
GCGCTGGCCTCGCGTACTACTACCAAGGCGAGAAGGAGAAGAAGCAGCAA
CAAGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCACTCGGCGGGCC
TTGGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGACGCGGACTTCC
GCGGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACTGCCCTGACATC
TGCCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACCTGCTTGACAA
GGAGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCCGTTGATCCCG
ACCGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAGACTTTCACCCG
CGTATCTTGTATTTGACGGGCACGCAGGAGCAGCTGGCTAAGGTGACCAA
AGGTTACCGAGTCTACTTCAGCAAGGTACGTGAAAGGCCGTTACAAAGAT
AG
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Synonyms
Publications