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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:619927..621954 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02090.2 vs.
Match: EWM27444.1 (Glycosyl transferase, family 8, partial [Nannochloropsis gaditana]) HSP 1 Score: 374.8 bits (961), Expect = 3.100e-100 Identity = 169/243 (69.55%), Postives = 199/243 (81.89%), Query Frame = 0
Query: 124 SKYGIDLIAMVHPNVTTSRAALMRAGWKVLERDIPLDINEIQGDYLRERIAKNGCCGATELLKLYAWRLTDYHRVVHLDMDSLLLQPLDELFDLSGKDFLYTCDYGMMTRGSKACPVQGGFLILKPNEEDFKRLVNTVKLGDFRAGSAWGGEHIGWYWGGMTIQGLLPYYFHKLTDPTRAKEVDRCVYNNMFDNPECKNASI-PMIKNVHFTVCQKPWTCTTHAKNAACTPFMEKWFQLRREV 366
SKYG+D IA+VHPNVTTSRAAL R+GWKV+ERDIP+DI +IQG +LRE IAK+GCCGATELLKLYAW LTDYHRVVHLDMDS+LLQP+DELFD K F+YTCDYGM KAC VQGGFL+L+PN +F+RLV+TVK+GDFR GS WGG+ IGW +GGMTIQGLLPYYF L+DP + ++D C YN MFD P+CKNAS+ P +K+VHFTVCQKPW+C K AC F KWF+LR E+
Sbjct: 3 SKYGVDFIAIVHPNVTTSRAALRRSGWKVIERDIPVDITDIQGTFLREHIAKSGCCGATELLKLYAWTLTDYHRVVHLDMDSMLLQPMDELFDKEDKTFMYTCDYGMTNERLKACMVQGGFLLLRPNVTEFERLVDTVKIGDFRQGSGWGGKGIGWGYGGMTIQGLLPYYFLSLSDPELSLQLDHCKYNTMFDQPQCKNASLFPSVKSVHFTVCQKPWSCINTHKE-ACEYFKSKWFELRDEL 244
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02090.2 ID=NO08G02090.2|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp ACAGGCAGTACAAATATGCCCAAACATCGAGGCGTCAGCGTCTGTGCTGG GCGTGGTGAGGTGGTGAGTGGACGTTTCCCGCACGGTGTGCTGGAGCGGA GCAAGTTCCAAAGACGGGTGCCCACGGTACTGAAGGTCACGATCATCCTC GGCGCCTTCGTATTTTTTGCCTTGAAGCTCACCTACAGTCGATCAACTCA GGACGCGATCACAACCTTGGACCTCTCCTCCGTGTCTTCAGGTGGACAGA AGAAACTGAAAGCGCAGGCAGGCCGGAGGATGGATGGCAAGACGGTCGCC TATGTCATCTCCGTAACAGCGGACGGGCCCTACATGGACGGGGCTGCTGT ATTGGCGCACAGTATCCGCAAGGCCTCGACAGACTCTAAGTACGGGATCG ACCTTATTGCCATGGTCCATCCTAACGTCACCACCTCCCGTGCAGCCCTC ATGCGCGCCGGCTGGAAAGTGCTCGAACGAGATATTCCCCTCGACATCAA TGAAATCCAGGGCGACTACCTGAGAGAGCGTATCGCCAAGAACGGCTGCT GCGGTGCGACCGAGCTACTGAAGCTCTACGCATGGCGCCTCACTGACTAC CACCGCGTCGTGCACCTGGACATGGACTCCCTCCTCCTCCAACCCCTCGA CGAACTATTTGACTTGTCAGGAAAAGATTTCTTGTACACATGTGACTATG GAATGATGACTAGGGGCTCGAAAGCCTGCCCGGTGCAAGGGGGGTTTCTC ATCTTGAAGCCCAATGAGGAGGATTTCAAGAGACTGGTGAACACCGTGAA ACTTGGGGATTTTCGCGCAGGATCTGCATGGGGTGGGGAGCACATCGGGT GGTATTGGGGGGGGATGACGATTCAAGGACTGCTCCCCTACTATTTCCAC AAGCTCACCGACCCCACCCGTGCCAAGGAAGTGGACCGCTGCGTCTATAA CAATATGTTCGACAACCCCGAGTGCAAGAATGCCAGCATCCCTATGATTA AAAATGTGCATTTTACTGTGTGTCAGAAGCCATGGACTTGCACTACGCAC GCTAAGAATGCGGCTTGCACGCCATTTATGGAGAAGTGGTTCCAGTTGCG GAGAGAGGTACGTTTTGGTTCGTAATAAGGAGTGGGCGGACTGTGGGTGT CATGTACCTTTAGAATGGTAGCAAGCCTGTCAAATGCCCCATGTCGCCTC TTGTCACATCTACTTTCTCCCTTTCGCTCCCAACTTTTCTTCACATTCAA CACAGCTCGAGAGCATGGAGACGGGAGCGTATGGAGAAGCGTGCGTACGA GGAAACTACCGGCCACTAGAATTCCTTCAAGATGATGTGCCGGCGGTGGC CACAGGTGGAGCAGCGACCCCATAGTAGTTGTAGATGGAGATCATGGATT GACGAAGAGGATGGAAGAGTAGAAAGCAGGGGTAGCTATGACCATAGACA CATGAAGTTATGAAGAACAAAATAATGTACGTATATTTGAAGCCGAAACC TTATTGAACGAGACGTTTGATCAAGGCACATGTATGCTGATGGTGCTG back to topprotein sequence of NO08G02090.2 >NO08G02090.2-protein ID=NO08G02090.2-protein|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MPKHRGVSVCAGRGEVVSGRFPHGVLERSKFQRRVPTVLKVTIILGAFVF FALKLTYSRSTQDAITTLDLSSVSSGGQKKLKAQAGRRMDGKTVAYVISV TADGPYMDGAAVLAHSIRKASTDSKYGIDLIAMVHPNVTTSRAALMRAGW KVLERDIPLDINEIQGDYLRERIAKNGCCGATELLKLYAWRLTDYHRVVH LDMDSLLLQPLDELFDLSGKDFLYTCDYGMMTRGSKACPVQGGFLILKPN EEDFKRLVNTVKLGDFRAGSAWGGEHIGWYWGGMTIQGLLPYYFHKLTDP TRAKEVDRCVYNNMFDNPECKNASIPMIKNVHFTVCQKPWTCTTHAKNAA CTPFMEKWFQLRREVRFGS* back to topmRNA from alignment at chr8:619927..621954- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02090.2 ID=NO08G02090.2|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at chr8:619927..621954- (Nannochloropsis oceanica) ACAGGCAGTACAAATATGCCCAAACATCGAGGCGTCAGCGTCTGTGCTGG
GCGTGGTGAGGTGGTGAGTGGACGTTTCCCGCACGGTGTGCTGGAGCGGA
GCAAGTTCCAAAGACGGGTGCCCACGGTACTGAAGGTCACGATCATCCTC
GGCGCCTTCGTATTTTTTGCCTTGAAGCTCACCTACAGTCGATCAACTCA
GGACGCGATCACAACCTTGGACCTCTCCTCCGTGTCTTCAGGTGGACAGA
AGAAACTGAAAGCGCAGGCAGGCCGGAGGATGGATGGCAAGACGGTCGCC
TATGTCATCTCCGTAACAGCGGACGGGCCCTACATGGACGGGGCTGCTGT
ATTGGCGCACAGTATCCGCAAGGCCTCGACAGACTCTAAGTACGGGATCG
ACCTTATTGCCATGGTCCATCCTAACGTCACCACCTCCCGTGCAGCCCTC
ATGCGCGCCGGCTGGAAGTAAGTTTTCAGGAGGATGGGGAGGGTGGGGCC
TTGGGGGTTGATTTATGCGAGATGTTGGCCTCATCGTATACGCTTTGCTC
TACTTTGTTGTTGAAAAGAAAATGAGAGGGTGCTGCGAATTGTTGCATCC
CAACTGTGGTGCAGGCTGAGCTTGCCGCATCCCTTCGCCCCTCATGCACT
CACGACCCGTTTTCCCCCATTTCCCCCCCCTCTGCATATATATATATATA
TATATATATATATATAGAGTGCTCGAACGAGATATTCCCCTCGACATCAA
TGAAATCCAGGGCGACTACCTGAGAGAGCGTATCGCCAAGAACGGCTGCT
GCGGTGCGACCGAGCTACTGAAGCTCTACGCATGGCGCCTCACTGACTAC
CACCGCGTCGTGCACCTGGACATGGACTCCCTCCTCCTCCAACCCCTCGA
CGAACTATTTGACTTGTCAGGAAAAGATTTCTTGTACACATGTGACTATG
GAATGATGACTAGGGGCTCGAAAGCCTGCCCGGTGCAAGGGGGGTTTCTC
ATCTTGAAGCCCAATGAGGAGGATTTCAAGAGACTGGTGAACACCGTGAA
ACTTGGGGATTTTCGCGCAGGATCTGCATGGGGTGGGGAGCACATCGGGT
GGTATTGGGGGGGGATGACGATTCAAGGTACGGAGGGGGGGTGCTATAGT
GAGTAGGATGGGAGCTGATGGTGAGGAGAGGGGTTGGAATGAGTCAGGAC
GGTTGACGGTGGAGAAAAGGATAGACAGCGGTGTTGGCAGCCCTTCCGCG
TGGCCAAGGGCTGTATAATTTCCCTTTTGTCTTTTCCAAACATGCAAACA
TAAATTCATCTCGCGTCTTTCCTTATTTTTCCTTCCTCTGTACTTTCCAT
TCCTCAGGACTGCTCCCCTACTATTTCCACAAGCTCACCGACCCCACCCG
TGCCAAGGAAGTGGACCGCTGCGTCTATAACAATATGTTCGACAACCCCG
AGTGCAAGAATGCCAGCATCCCTATGATTAAAAATGTGCATTTTACTGTG
TGTCAGAAGCCATGGACTTGCACTACGCACGCTAAGAATGCGGCTTGCAC
GCCATTTATGGAGAAGTGGTTCCAGTTGCGGAGAGAGGTACGTTTTGGTT
CGTAATAAGGAGTGGGCGGACTGTGGGTGTCATGTACCTTTAGAATGGTA
GCAAGCCTGTCAAATGCCCCATGTCGCCTCTTGTCACATCTACTTTCTCC
CTTTCGCTCCCAACTTTTCTTCACATTCAACACAGCTCGAGAGCATGGAG
ACGGGAGCGTATGGAGAAGCGTGCGTACGAGGAAACTACCGGCCACTAGA
ATTCCTTCAAGATGATGTGCCGGCGGTGGCCACAGGTGGAGCAGCGACCC
CATAGTAGTTGTAGATGGAGATCATGGATTGACGAAGAGGATGGAAGAGT
AGAAAGCAGGGGTAGCTATGACCATAGACACATGAAGTTATGAAGAACAA
AATAATGTACGTATATTTGAAGCCGAAACCTTATTGAACGAGACGTTTGA
TCAAGGCACATGTATGCTGATGGTGCTG back to topCoding sequence (CDS) from alignment at chr8:619927..621954- >NO08G02090.2 ID=NO08G02090.2|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr8:619927..621954- (Nannochloropsis oceanica) ATGCCCAAACATCGAGGCGTCAGCGTCTGTGCTGGGCGTGGTGAGGTGGT GAGTGGACGTTTCCCGCACGGTGTGCTGGAGCGGAGCAAGTTCCAAAGAC GGGTGCCCACGGTACTGAAGGTCACGATCATCCTCGGCGCCTTCGTATTT TTTGCCTTGAAGCTCACCTACAGTCGATCAACTCAGGACGCGATCACAAC CTTGGACCTCTCCTCCGTGTCTTCAGGTGGACAGAAGAAACTGAAAGCGC AGGCAGGCCGGAGGATGGATGGCAAGACGGTCGCCTATGTCATCTCCGTA ACAGCGGACGGGCCCTACATGGACGGGGCTGCTGTATTGGCGCACAGTAT CCGCAAGGCCTCGACAGACTCTAAGTACGGGATCGACCTTATTGCCATGG TCCATCCTAACGTCACCACCTCCCGTGCAGCCCTCATGCGCGCCGGCTGG AAAGTGCTCGAACGAGATATTCCCCTCGACATCAATGAAATCCAGGGCGA CTACCTGAGAGAGCGTATCGCCAAGAACGGCTGCTGCGGTGCGACCGAGC TACTGAAGCTCTACGCATGGCGCCTCACTGACTACCACCGCGTCGTGCAC CTGGACATGGACTCCCTCCTCCTCCAACCCCTCGACGAACTATTTGACTT GTCAGGAAAAGATTTCTTGTACACATGTGACTATGGAATGATGACTAGGG GCTCGAAAGCCTGCCCGGTGCAAGGGGGGTTTCTCATCTTGAAGCCCAAT GAGGAGGATTTCAAGAGACTGGTGAACACCGTGAAACTTGGGGATTTTCG CGCAGGATCTGCATGGGGTGGGGAGCACATCGGGTGGTATTGGGGGGGGA TGACGATTCAAGGACTGCTCCCCTACTATTTCCACAAGCTCACCGACCCC ACCCGTGCCAAGGAAGTGGACCGCTGCGTCTATAACAATATGTTCGACAA CCCCGAGTGCAAGAATGCCAGCATCCCTATGATTAAAAATGTGCATTTTA CTGTGTGTCAGAAGCCATGGACTTGCACTACGCACGCTAAGAATGCGGCT TGCACGCCATTTATGGAGAAGTGGTTCCAGTTGCGGAGAGAGGTACGTTT TGGTTCGTAA back to top
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